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51.
Hasmik Keshishian E Robert McDonald III Filip Mundt Randy Melanson Karsten Krug Dale A Porter Luke Wallace Dominique Forestier Bokang Rabasha Sara E Marlow Judit JaneValbuena Ellen Todres Harrison Specht Margaret Lea Robinson Pierre M Jean Beltran Ozgun Babur Meagan E Olive Javad Golji Eric Kuhn Michael Burgess Melanie A MacMullan Tomas Rejtar Karen Wang DR Mani Shankha Satpathy Michael A Gillette William R Sellers Steven A Carr 《Molecular systems biology》2021,17(9)
Reliable methods to quantify dynamic signaling changes across diverse pathways are needed to better understand the effects of disease and drug treatment in cells and tissues but are presently lacking. Here, we present SigPath, a targeted mass spectrometry (MS) assay that measures 284 phosphosites in 200 phosphoproteins of biological interest. SigPath probes a broad swath of signaling biology with high throughput and quantitative precision. We applied the assay to investigate changes in phospho‐signaling in drug‐treated cancer cell lines, breast cancer preclinical models, and human medulloblastoma tumors. In addition to validating previous findings, SigPath detected and quantified a large number of differentially regulated phosphosites newly associated with disease models and human tumors at baseline or with drug perturbation. Our results highlight the potential of SigPath to monitor phosphoproteomic signaling events and to nominate mechanistic hypotheses regarding oncogenesis, response, and resistance to therapy. 相似文献
52.
Lihong?BuEmail author Kenneth?DR?Setchell Edwin?D?Lephart 《Reproductive biology and endocrinology : RB&E》2005,3(1):58
Background
Isoflavones, the most abundant phytoestrogens in soy foods, are structurally similar to 17beta-estradiol. Few studies have examined the nociception and stress hormone responses after consumption of soy isoflavones. 相似文献53.
DR Suresh Vamseedhar Annam K Pratibha BV Maruti Prasad 《Journal of biomedical science》2009,16(1):61-4
Background
Oxidative stress induced by the production of reactive oxygen species may play a critical role in the stimulation of HIV replication and the development of immunodeficiency. This study was conducted as there are limited and inconclusive studies on the significance of a novel early marker of oxidative stress which can reflect the total antioxidant capacity in HIV patients, 相似文献54.
Thirty-four cytochrome P-450 sequences from one bacterial and six
vertebrate species have been aligned with the aid of a computer alignment
algorithm. Phylogenetic trees were constructed using the
unweighted-pair-group and neighbor-joining methods. The two trees differed
at only a single branch point near the base of the tree. The cytochrome
P-450 superfamily of proteins clustered into eight families and contained
16 gene-duplication events. The first gene duplication occurred
approximately 1,360 Myr before the present (Mybp) and gave rise to
cytochrome P-450s found in two different cellular organelles, the
mitochondria and the endoplasmic reticulum. Both groups utilize cholesterol
or its metabolites as substrates, implying that cholesterol existed greater
than 1,360 Mybp. The fourth gene duplication (approximately 900 Mybp) gave
rise to the drug-metabolizing P-450s. These proteins aid in the
detoxification of foreign chemicals, as opposed to the metabolism of
endogenous compounds. The importance of the capacity to metabolize drugs is
reflected in 11 further gene duplications occurring in this lineage. The
first occurred approximately 800 Mybp and gave rise to the two major P-450
families, the phenobarbital and 3-methylcholanthrene families. An apparent
increase in the rate of cytochrome P-450 evolution is noted between the
bird-mammal divergence (300 Mybp) and the mammalian radiation (75 Mybp).
相似文献
55.
56.
This study determined a millipede sampling protocol that was efficient, replicable, and thorough, by testing commonly used
methods (pitfall trapping, hand collection, and leaf litter collection with Berlese extraction) at sites where the fauna had
been intensively sampled, so that the results of different sampling protocols (‘experimental sampling’) could be compared
to the previously known fauna of each site (determined by ‘baseline sampling’). Two methods of collecting leaf litter were
compared. One method allowed the collector to choose the locations from which to sample leaf litter, while the second method
used randomly generated locations. Experimental sampling took place at both an upland site (Swallow Cliff Woods, Cook Co,
IL) and a wetland site (Cedarburg Bog, Ozaukee Co, WI) where reliable baseline data was available. The optimal protocol for
millipedes was found to consist of a combination of the hand collection and the a priori litter methods. In studies where there are constraints on time or resources devoted to sampling or processing, this protocol
can be reduced to the single most effective method, hand collection. Overall, the a priori litter collection method was more effective than the random litter collection method. 相似文献
57.