Linking Molecular Microbial Ecology to Geochemistry in a Coastal Hypoxic Zone

Multiple environmental mechanisms have been proposed to control bottom water hypoxia (<2 mg O₂ L^?1) in the northern Gulf of Mexico Louisiana shelf. Near-bottom hypoxia has been attributed to a direct consumption of oxygen through benthic microbial respiration and a secondary chemical reaction between oxygen and reduced metabolites (i.e. ferrous iron and total sulfide) from these populations. No studies to date have examined the metabolically active microbial community structure in conjunction with the geochemical profile in these sediments. Temporal and spatial differences in dissolved and solid phase geochemistry were investigated in the upper 20 cm of the sediment column. Pyrosequencing of reverse transcribed small subunit (SSU) ribosomal ribonucleic acid (rRNA) was used to determine population distribution. Results indicated that populations shallower than 10 cm below surface were temporally variable yet uniform between sites, while below this depth, populations were more site-specific. This suggests a potential interaction between the water column and the benthic microbial population limited to a shallow depth. The presence of dissolved reduced iron in the upper sediment column was indicative of low oxygen concentration, yet sulfide was at or below detection limits. Putative sulfate and iron reducing and oxidizing populations were metabolically active at similar depths suggesting potential recycling of products. Results from this study indicate low carbon concentrations in the shallow sediments limit general metabolic activity, reducing the potential for microbial respiration. Supplemental materials are available for this article. Go to the publisher's online edition of Geomicrobiology Journal to view the supplemental file.     

Effect of fertilizer levels on grain yield,incidence and severity of downy mildew in pearl millet

The effect of various levels of nitrogen (0.0, 30.0, 60.0, 120.0) and phosphorus (0.0, 6.5, 13.0, 36.0) on the incidence and severity of downy mildew of pearl millet and yield of two pearl millet varieties (Zango and GB8375) were studied under field conditions in 2000 and 2001 respectively. Both nitrogen and phosphorus significantly increased incidence and severity of the disease in the two varieties. Grain yield and 1000 grain weight of the varieties also increased with nitrogen and phosphorus levels.     

Characterization of D-glucaric acid using NMR, X-ray crystal structure, and MM3 molecular modeling analyses

D-Glucaric acid was characterized in solution by comparing NMR spectra from the isotopically unlabeled molecule with those from D-glucaric acid labeled with deuterium or carbon-13 atoms. The NMR studies provided unequivocal assignments for all carbon atoms and non-hydroxyl protons of the molecule. The crystal structure of D-glucaric acid was obtained by X-ray diffraction techniques and the structure was a close match to the low energy conformation generated from a Monte-Carlo-based searching protocol employing the MM3 molecular mechanics program. The molecule adopts a bent structure in both the crystalline and computationally generated lowest-energy structure, a conformation that is devoid of destabilizing eclipsed 1,3-hydroxyl interactions.     

Antibacterial and antitubercular activity of fosmidomycin, FR900098, and their lipophilic analogs

The nonmevalonate pathway (NMP) of isoprene biosynthesis is an exciting new route toward novel antibiotic development. Inhibitors against several enzymes in this pathway are currently under examination. A significant liability of many of these agents is poor cell penetration. To overcome and improve our understanding of this problem, we have synthesized a series of lipophilic, prodrug analogs of fosmidomycin and FR900098, inhibitors of the NMP enzyme Dxr. Several of these compounds show improved antibacterial activity against a panel of organisms relative to the parent compound, including activity against Mycobacterium tuberculosis (Mtb). Our results show that this strategy can be an effective way for improving whole cell activity of NMP inhibitors.     

Role of mef2ca in developmental buffering of the zebrafish larval hyoid dermal skeleton

Phenotypic robustness requires a process of developmental buffering that is largely not understood, but which can be disrupted by mutations. Here we show that in mef2ca^b1086 loss of function mutant embryos and early larvae, development of craniofacial hyoid bones, the opercle (Op) and branchiostegal ray (BR), becomes remarkably unstable; the large magnitude of the instability serves as a positive attribute to learn about features of this developmental buffering. The OpBR mutant phenotype variably includes bone expansion and fusion, Op duplication, and BR homeosis. Formation of a novel bone strut, or a bone bridge connecting the Op and BR together occurs frequently. We find no evidence that the phenotypic stability in the wild type is provided by redundancy between mef2ca and its co-ortholog mef2cb, or that it is related to the selector (homeotic) gene function of mef2ca. Changes in dorsal–ventral patterning of the hyoid arch also might not contribute to phenotypic instability in mutants. However, subsequent development of the bone lineage itself, including osteoblast differentiation and morphogenetic outgrowth, shows marked variation. Hence, steps along the developmental trajectory appear differentially sensitive to the loss of buffering, providing focus for the future study.     

Winter space use of coyotes in high-elevation environments: behavioral adaptations to deep-snow landscapes

In the last century, coyotes (Canis latrans) have expanded their range geographically, but have also expanded their use of habitats within currently occupied regions. Because coyotes are not morphologically adapted for travel in deep snow, we studied coyote space use patterns in a deep-snow landscape to examine behavioral adaptations enabling them to use high elevations during winter. We examined the influence of snow depth, snow penetrability, canopy cover, and habitat type, as well as the rates of prey and predator track encounters, on coyote travel distance in high-elevation terrain in northwestern Wyoming, USA. We backtracked 13 radio-collared coyotes for 265.41 km during the winters of 2006–2007 and 2007–2008, and compared habitat use and movement patterns of the actual coyotes with 259.11 km of random travel paths. Coyotes used specific habitats differently than were available on the landscape. Open woodlands were used for the majority of coyote travel distance, followed by mixed conifer, and closed-stand spruce–fir. Prey track encounters peaked in closed-stand, mature Douglas fir, followed by 50- to 150-year-old lodgepole pine stands, and 0- to 40-year-old regeneration lodgepole pine stands. Snowmobile trails had the most variation between use and availability on the landscape (12.0 % use vs. 0.6 % available). Coyotes increased use of habitats with dense canopy cover as snow penetration increased and rates of rodent and red squirrel track encounters increased. Additionally, coyotes spent more time in habitats containing more tracks of ungulates. Conversely, use of habitats with less canopy cover decreased as snow depth increased, and coyotes traveled more directly in habitats with less canopy cover and lower snow penetration, suggesting coyotes used these habitats to travel. Coyotes persisted throughout the winter and effectively used resources despite deep snow conditions in a high-elevation environment.