Development of an intact cell reporter gene beta-lactamase assay for G protein-coupled receptors for high-throughput screening

G protein-coupled receptors (GPCRs) are involved in a large variety of physiological disorders, and are thus important pharmaceutical drug targets. Here, we describe the development and characterization of a beta-lactamase reporter gene assay as a functional readout for the ligand-induced activation of the human bradykinin B1 receptor, expressed recombinantly in CHO cells. The beta-lactamase reporter gene assay provides high sensitivity due to the absence of endogenous beta-lactamase activity in mammalian cells. The cell-permeable fluorogenic substrate allows single-cell cloning of cells expressing functional BK1 receptors. Pharmacological characterization reveals comparable sensitivity and potency of known BK1 receptor agonists and antagonists between the beta-lactamase assay, competition-binding assay, and other direct measurements of second messengers. The beta-lactamase assay has been optimized for cell density, time of agonist stimulation, and DMSO sensitivity. This CHO-hBK1-beta-lactamase assay is well suited to automation and miniaturization required for high-throughput screening.     

Facultative prioritization of wing growth in the Welcome Swallow Hirundo neoxena

Bird species adapted to variable environments tend to have slow lean tissue growth rates and high fat deposition rates, allowing survival during food shortages. This emphasis on fat deposition may be a fixed physiological trait. Alternatively, tissue allocation may be adjusted facultatively according to the proximate food supply. We consider two models of facultative adjustment that could account for the emphasis on fat deposition: (1) the fat-priority model, in which no lean growth occurs when food is scarce, and (2) the lean-priority model, in which a minimal level of lean growth always occurs but nutrients are otherwise allocated to fat deposition. We tested these two models using Welcome Swallows Hirundo neoxena , a species we show to have a variable food supply that is influenced by weather. We reduced food supply to chicks experimentally, by enlarging broods or excluding parents from chicks, and tested for reduction in wing growth (an indicator of lean growth) and mass growth (an indicator of fat deposition). Mass growth was retarded by both manipulations, but not wing growth, corroborating the lean-priority model. This growth strategy may function not to cope with violent variation in food supply, but to maintain development and symmetry of wings and feathers in the face of moderate variation in food supply. Our results contrast with those of a similar experiment on the Black Noddy Anous minutus , a species with more severe variation in food supply.     

Small molecule antagonists of the CCR2b receptor. Part 2: Discovery process and initial structure-activity relationships of diamine derivatives

Structure-activity relationships (SAR) of a weakly active class of CCR2b inhibitors were utilized to initiate a lead evolution program employing the Drug Discovery Engine. Several alternative structural series have been discovered that display nanomolar activity in the CCR2b binding and CCR2b-mediated chemotaxis assays.     

Product and Economic Analysis of Direct Liquefaction of Swine Manure

Direct hydrothermal liquefaction of biomass is a technology that has shown promising results in treating waste and producing oil. A batch hydrothermal liquefaction system was used to treat swine manure, and it successfully converted up to 70% of swine manure volatile solids into oil and reduced manure chemical oxygen demand by up to 75% (He et al., Trans ASAE 43(6):1827?C1833, 2000). A continuous-flow reactor was developed and resulted in similar conversion rates to the batch process, indicating the potential for scale-up (Ocfemia, 2005). This study investigates the hydrothermal process in relation to a livestock system to determine the impact on oil yields and fertilizer values that might be realized in a farm-scale application. Oil products from the hydrothermal process are maximized using manure containing around 20% solids, but typical swine confinement facilities contain wetter manure slurries. A preliminary investigation of liquid?Csolid separation methods was conducted to determine the resultant oil yields and the effects of the hydrothermal process on fertilizer values in the wastewater as compared to the unprocessed manure. Energy and economic analyses of the liquid?Csolid separation and hydrothermal liquefaction processes were also conducted. The hydrothermal process results in an oil product as well as a fertilizer product that retains the majority of its nitrogen value with a reduced level of phosphorus (as compared to the unprocessed swine manure). The economic analyses indicate feasibility for several different liquid?Csolid separation methods, dependent on the equipment and maintenance costs assumed for each method. Conveyor-belt manure collection systems in conjunction with hydrothermal liquefaction are especially promising.     

Compartment-specific labeling information in 13C metabolic flux analysis of plants

Metabolic engineering of plants has great potential for the low cost production of chemical feedstocks and novel compounds, but to take full advantage of this potential a better understanding of plant central carbon metabolism is needed. Flux studies define the cellular phenotype of living systems and can facilitate rational metabolic engineering. However the measurements usually made in these analyses are often not sufficient to reliably determine many fluxes that are distributed between different subcellular compartments of eukaryotic cells. We have begun to address this shortcoming by increasing the number and quality of measurements that provide (13)C labeling information from specific compartments within the plant cell. The analysis of fatty acid groups, cell wall components, protein glycans, and starch, using both gas chromatography/mass spectrometry and nuclear magnetic resonance spectroscopy are presented here. Fatty acid labeling determinations are sometimes highly convoluted. Derivatization to butyl amides reduces the errors in isotopomer resolution and quantification, resulting in better determination of fluxes into seed lipid reserves, including both plastidic and cytosolic reactions. While cell walls can account for a third or more of biomass in many seeds, no quantitative cell wall labeling measurements have been reported for plant flux analysis. Hydrolyzing cell wall and derivatizing sugars to the alditol acetates, provides novel labeling information and thereby can improve identification of flux through upper glycolytic intermediates of the cytosol. These strategies improve the quantification of key carbon fluxes in the compartmentalized flux network of plant cells.     

Improved Heritability Estimation from Genome-wide SNPs

Estimation of narrow-sense heritability, h², from genome-wide SNPs genotyped in unrelated individuals has recently attracted interest and offers several advantages over traditional pedigree-based methods. With the use of this approach, it has been estimated that over half the heritability of human height can be attributed to the ∼300,000 SNPs on a genome-wide genotyping array. In comparison, only 5%–10% can be explained by SNPs reaching genome-wide significance. We investigated via simulation the validity of several key assumptions underpinning the mixed-model analysis used in SNP-based h² estimation. Although we found that the method is reasonably robust to violations of four key assumptions, it can be highly sensitive to uneven linkage disequilibrium (LD) between SNPs: contributions to h² are overestimated from causal variants in regions of high LD and are underestimated in regions of low LD. The overall direction of the bias can be up or down depending on the genetic architecture of the trait, but it can be substantial in realistic scenarios. We propose a modified kinship matrix in which SNPs are weighted according to local LD. We show that this correction greatly reduces the bias and increases the precision of h² estimates. We demonstrate the impact of our method on the first seven diseases studied by the Wellcome Trust Case Control Consortium. Our LD adjustment revises downward the h² estimate for immune-related diseases, as expected because of high LD in the major-histocompatibility region, but increases it for some nonimmune diseases. To calculate our revised kinship matrix, we developed LDAK, software for computing LD-adjusted kinships.     

Developing core outcome sets for clinical trials: issues to consider

ABSTRACT: Selection of appropriate outcomes or domains is crucial when designing clinical trials to compare directly the effects of different interventions in ways that minimise bias. If the findings are to influence policy and practice then the chosen outcomes need to be relevant and important to key stakeholders including patients and the public, health care professionals and others making decisions about health care. There is a growing recognition that insufficient attention has been paid to the outcomes measured in clinical trials. These issues could be addressed through the development and use of an agreed standardised collection of outcomes, known as a core outcome set, which should be measured and reported, as a minimum, in all trials for a specific clinical area. Accumulating work in this area has identified the need for general guidance on the development of core outcome sets. Key issues to consider in the development of a core outcome set include its scope, the stakeholder groups to be involved, choice of consensus method and the achievement of a consensus.     

Mechanical Disruption of Tumors by Iron Particles and Magnetic Field Application Results in Increased Anti-Tumor Immune Responses

The primary tumor represents a potential source of antigens for priming immune responses for disseminated disease. Current means of debulking tumors involves the use of cytoreductive conditioning that impairs immune cells or removal by surgery. We hypothesized that activation of the immune system could occur through the localized release of tumor antigens and induction of tumor death due to physical disruption of tumor architecture and destruction of the primary tumor in situ. This was accomplished by intratumor injection of magneto-rheological fluid (MRF) consisting of iron microparticles, in Balb/c mice bearing orthotopic 4T1 breast cancer, followed by local application of a magnetic field resulting in immediate coalescence of the particles, tumor cell death, slower growth of primary tumors as well as decreased tumor progression in distant sites and metastatic spread. This treatment was associated with increased activation of DCs in the draining lymph nodes and recruitment of both DCs and CD8(+)T cells to the tumor. The particles remained within the tumor and no toxicities were observed. The immune induction observed was significantly greater compared to cryoablation. Further anti-tumor effects were observed when MRF/magnet therapy was combined with systemic low dose immunotherapy. Thus, mechanical disruption of the primary tumor with MRF/magnetic field application represents a novel means to induce systemic immune activation in cancer.