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141.
Lanigan-Gerdes S Briceno G Dooley AN Faull KF Lazazzera BA 《Journal of bacteriology》2008,190(20):6668-6675
Extracellular Phr pentapeptides produced by gram-positive, spore-forming bacteria regulate processes during the transition from exponential- to stationary-phase growth. Phr pentapeptides are produced by cleavage of their precursor proteins. We determined the residues that direct this cleavage for the Bacillus subtilis Phr peptide, CSF, which is derived from the C terminus of PhrC. Strains expressing PhrC with substitutions in residues -1 to -5 relative to the cleavage site had a defect in CSF production. The mutant PhrC proteins retained a functional signal sequence for secretion, as assessed by secretion of PhrC-PhoA fusions. To determine whether the substitutions directly affected cleavage of PhrC to CSF, we tested cleavage of synthetic pro-CSF peptides that corresponded to the C terminus of PhrC and had an amino acid substitution at the -2, -3, or -4 position. The mutant pro-CSF peptides were cleaved less efficiently to CSF than the wild-type pro-CSF peptide whether they were incubated with whole cells, cell wall material, or the processing protease subtilisin or Vpr. To further define the range of amino acids that support CSF production, the amino acid at the -4 position of PhrC was replaced by the 19 canonical amino acids. Only four substitutions resulted in a >2-fold defect in CSF production, indicating that this position is relatively immune to mutational perturbations. These data revealed residues that direct cleavage of CSF and laid the groundwork for testing whether other Phr peptides are processed in a similar manner. 相似文献
142.
Surendra Kumar ?smund Skj?veland Russell JS Orr P?l Enger Torgeir Ruden Bj?rn-Helge Mevik Fabien Burki Andreas Botnen Kamran Shalchian-Tabrizi 《BMC bioinformatics》2009,10(1):357
Background
Large multigene sequence alignments have over recent years been increasingly employed for phylogenomic reconstruction of the eukaryote tree of life. Such supermatrices of sequence data are preferred over single gene alignments as they contain vastly more information about ancient sequence characteristics, and are thus more suitable for resolving deeply diverging relationships. However, as alignments are expanded, increasingly numbers of sites with misleading phylogenetic information are also added. Therefore, a major goal in phylogenomic analyses is to maximize the ratio of information to noise; this can be achieved by the reduction of fast evolving sites. 相似文献143.
Xiao L Moore JE Ukoh U Gatei W Lowery CJ Murphy TM Dooley JS Millar BC Rooney PJ Rao JR 《Applied and environmental microbiology》2006,72(6):4461-4463
Cryptosporidium spp. were detected in 25 of 56 pig slurry samples from 33 Irish farms by PCR and DNA sequencing. The organisms detected included C. suis, Cryptosporidium pig genotype II, and C. muris. We concluded that Cryptosporidium oocysts can persist in treated slurry and potentially contaminate surface water through improper discharge or uncontrolled runoff. 相似文献
144.
OLF Weyl MK Schirrmann JS Hargrove T Bodill ER Swartz 《African Journal of Aquatic Science》2017,42(4):359-365
Largemouth bass Micropterus salmoides are a popular North American angling species that was introduced into South Africa in 1928. To enhance the largemouth bass fisheries, Florida bass Micropterus floridanus were introduced into KwaZulu Natal, South Africa, in 1980. Knowledge on the status of M. floridanus in South Africa is required, because it lives longer and reaches larger sizes than M. salmoides, which may result in heightened impacts on native biota. Because M. floridanus are morphologically similar, but genetically distinct from M. salmoides, the distribution of this species was assessed by genetically screening 185 Micropterus sp. individuals sampled from 20 localities across South Africa using the mitochondrial ND2 gene. Individuals with mitochondrial DNA matching M. salmoides were recovered from 16 localities, whereas M. floridanus mitochondrial DNA was recovered from 13 localities. At nine localities (45%), the mitochondrial DNA of both species was detected. These results demonstrate M. floridanus dispersal to multiple sites across South Africa. 相似文献
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147.
Dooley JS 《Biotechnology advances》1994,12(4):669-677
Recombinant DNA technology has revolutionised microbiological analysis by providing rapid and sensitive methods for the direct detection and identification of organisms. These advances have been most successfully applied to basic research and to clinical microbiology. Continued improvements in the techniques and in assay formats have now brought them to the stage where they could be useful on an industrial scale. The use of nucleic acid techniques for the identification of bacteria of importance to the food industry is discussed with emphasis on developments in practical applications. 相似文献
148.
Karen Gr?nskov Christopher?M. Dooley Elsebet ?stergaard Robert?N. Kelsh Lars Hansen Mitchell?P. Levesque Kaj Vilhelmsen Kjeld M?llg?rd Derek?L. Stemple Thomas Rosenberg 《American journal of human genetics》2013,92(3):415-421
Autosomal-recessive albinism is a hypopigmentation disorder with a broad phenotypic range. A substantial fraction of individuals with albinism remain genetically unresolved, and it has been hypothesized that more genes are to be identified. By using homozygosity mapping of an inbred Faroese family, we identified a 3.5 Mb homozygous region (10q22.2–q22.3) on chromosome 10. The region contains five protein-coding genes, and sequencing of one of these, C10orf11, revealed a nonsense mutation that segregated with the disease and showed a recessive inheritance pattern. Investigation of additional albinism-affected individuals from the Faroe Islands revealed that five out of eight unrelated affected persons had the nonsense mutation in C10orf11. Screening of a cohort of autosomal-recessive-albinism-affected individuals residing in Denmark showed a homozygous 1 bp duplication in C10orf11 in an individual originating from Lithuania. Immunohistochemistry showed localization of C10orf11 in melanoblasts and melanocytes in human fetal tissue, but no localization was seen in retinal pigment epithelial cells. Knockdown of the zebrafish (Danio rerio) homolog with the use of morpholinos resulted in substantially decreased pigmentation and a reduction of the apparent number of pigmented melanocytes. The morphant phenotype was rescued by wild-type C10orf11, but not by mutant C10orf11. In conclusion, we have identified a melanocyte-differentiation gene, C10orf11, which when mutated causes autosomal-recessive albinism in humans. 相似文献
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150.
Ecosystems managed with contrasting fire regimes provide insight into the responses of vegetation and soil. Heathland, woodland and forest ecosystems along a gradient of resource availability were burnt over four decades in approximately 3- or 5-year intervals or were unburnt for 45–47 years (heathland, woodland), or experienced infrequent wildfires (forest: 14 years since the last fire). We hypothesized that, relative to unburnt or infrequent fires, frequent burning would favour herbaceous species over woody species and resprouting over obligate seeder species, and reduce understorey vegetation height, and topsoil carbon and nitrogen content. Our hypothesis was partially supported in that herbaceous plant density was higher in frequently burnt vegetation; however, woody plant density was also higher in frequently burnt areas relative to unburnt/infrequently burnt areas, across all ecosystems. In heathland, omission of frequent fire resulted in the dominance of fern Gleichenia dicarpa and subsequent competitive exclusion of understorey species and lower species diversity. As hypothesized, frequent burning in woodland and forest increased the density of facultative resprouters and significantly reduced soil organic carbon levels relative to unburnt sites. Our findings confirm that regular burning conserves understorey diversity and maintains an understorey of lower statured herbaceous plants, although demonstrates the potential trade-off of frequent burning with lower topsoil carbon levels in the woodland and forest. Some ecosystem specific responses to varied fire frequencies were observed, reflecting differences in species composition and fire response traits between ecosystems. Overall, unburnt vegetation resulted in the dominance of some species over others and the different vegetation types were able to withstand relatively high-frequency fire without the loss of biodiversity, mainly due to high environmental productivity and short juvenile periods. 相似文献