Predicting Metabolic Pathways of Small Molecules and Enzymes Based on Interaction Information of Chemicals and Proteins

Metabolic pathway analysis, one of the most important fields in biochemistry, is pivotal to understanding the maintenance and modulation of the functions of an organism. Good comprehension of metabolic pathways is critical to understanding the mechanisms of some fundamental biological processes. Given a small molecule or an enzyme, how may one identify the metabolic pathways in which it may participate? Answering such a question is a first important step in understanding a metabolic pathway system. By utilizing the information provided by chemical-chemical interactions, chemical-protein interactions, and protein-protein interactions, a novel method was proposed by which to allocate small molecules and enzymes to 11 major classes of metabolic pathways. A benchmark dataset consisting of 3,348 small molecules and 654 enzymes of yeast was constructed to test the method. It was observed that the first order prediction accuracy evaluated by the jackknife test was 79.56% in identifying the small molecules and enzymes in a benchmark dataset. Our method may become a useful vehicle in predicting the metabolic pathways of small molecules and enzymes, providing a basis for some further analysis of the pathway systems.     

Gene splicing by overlap extension: tailor-made genes using the polymerase chain reaction

Gene Splicing by Overlap Extension or "gene SOEing" is a PCR-based method of recombining DNA sequences without reliance on restriction sites and of directly generating mutated DNA fragments in vitro. By modifying the sequences incorporated into the 5'-ends of the primers, any pair of polymerase chain reaction products can be made to share a common sequence at one end. Under polymerase chain reaction conditions, the common sequence allows strands from two different fragments to hybridize to one another, forming an overlap. Extension of this overlap by DNA polymerase yields a recombinant molecule. This powerful and technically simple approach offers many advantages over conventional approaches for manipulating gene sequences.     

用微型计算机在TSr(Bg1Ⅱ)-1核苷酸顺序中寻找相似序列

<正> 为了在TSr(Bgl Ⅱ-1)核苷酸顺序中寻找有无类似α—顺序的冷点区顺序,我们在微型电子计算机上编制了查找相似序列顺序(WSS程序)。本程序的特点是运行速度快,无重复扫描,可自行选择欲查找的相似百分比和百分比精度,它不仅适用于寻找内切酶的酶切点,而且可以在相当长度的已测序DNA顺序中快速准确地检出碱基位置和数量发生随机变异的DNA相似片段,并直接计算、打印出相似百分比值。     

露水草的光合特性及其生态学意义

用盆栽和遮阴试验研究了露水草（Ｃｙａｎｏｔｉｓ ａｒａｃｈｎｏｉｄｅａ Ｃｌａｒｋｅ） 的光合作用特征,比较了不同遮光水平对光合速率、光合器官特性及光合产量的影响。结果如下：１．露水草是一种耐阴偏阳的Ｃ３ 类草木植物,其光合作用的光饱和点约为６５０ μｍ ｏｌ·ｍ － ２·ｓ－ １,光补偿点约为１７ μｍ ｏｌ·ｍ － ２·ｓ－ １,且具有高达１３０×１０－ ６的ＣＯ２ 补偿点。２．露水草的最大净光合速率为１２．４５ μｍ ｏｌ·ｍ － ２·ｓ－ １。叶片净光合速率的日变化规律呈双峰曲线,主峰在１１～１２ 时,次峰在１５时左右。３．遮光２０％ ～５０％ 有利于露水草的生长。与对照相比,叶片中叶绿素ｂ 的含量增加了４７％ ～８３％ ,并且由于净光合速率（相对光合速率）的提高,使光合生产量增加了１２％ ～１８％ 。     

生态蛇胆美容霜对治疗蠕形螨病及护肤美容的效果观察

本文报道了微生态制剂－生态蛇胆美容霜治疗蠕形螨病及其合并症的观察结果。用透明胶带定量计数法检查１１３１人,其中检出毛囊虫阳性者４０４例,定居率为３５．７％,检出毛囊出共４１８只。对４０４例毛囊虫阳性分两组,即实验组,和对照组进行对照。结果实验组２５１例中只有２例仍为阳性,其余转为阴性。     

湿地松粉蚧夏季数量凋落的原因分析

利用生命表技术及其相应的控制指数分析方法,对新侵入害虫湿地松粉蚧Ｏｒａｏｅｌｌａａ－ｃｕｔａ（Ｌｏｂｄｅｌｌ）夏季数量凋落的某些因子进行了量化分析。结果表明：在广东南部的新侵入区,夏季高温引起的松梢迅速老化,上代为害以后引起的营养质量的变化、拥挤以及煤污病的严重发生等,均对湿地松粉蚧夏季种群数量的凋落有着明显的影响,其总的排除作用控制指数ＥＩＰＣ为４６．８９,如果排除这几个因子的作用,下代种群的数量将为当代的４６．８９倍。