Collapse of the native ruffe (<Emphasis Type="Italic">Gymnocephalus cernua</Emphasis>) population in the Biesbosch lakes (the Netherlands) owing to round goby (<Emphasis Type="Italic">Neogobius melanostomus</Emphasis>) invasion

We investigated the change in benthic fish communities in three artificial lakes of the Biesbosch area in the Netherlands between two time periods: before and after the invasion of round goby (Neogobius melanostomus). Native ruffe (Gymnocephalus cernua), the dominant species in benthic gillnet and littoral beach seining catches before the invasion, almost completely disappeared in all lakes only 2 years after the invasion. We found a significant increase in 0 + perch (Perca fluviatilis) and, in some lakes, pikeperch (Sander lucioperca) abundance in gillnet catches after invasion. In the post-invasion period, the 0 + fish community was dominated by perch, and the older fish community was dominated by round goby. The species richness of 0 + fish increased in the post-invasion period owing to the invasion of gobiids. However, it did not change for older fish between periods. Our results clearly show that, owing to a similar benthic lifestyle and high niche overlap, ruffe was the only species negatively influenced by the round goby invasion. The competitive superiority of round goby over ruffe is so strong that the once-dominant species of the overall benthic fish community collapsed after only a few years of coexistence.     

Epigean communities of harvestmen (Opiliones) in Pannonian Basin floodplain forests: an interaction with environmental parameters

During the years 2015–2016, we studied the fauna of epigeon in eight similar habitats in Slovakia and Serbia. The study material of Opiliones was obtained by a pitfall trap method. We focused on the comparison of the incidence of harvestmen in floodplain forests and ecotones alongside the Danube River in Slovakia and along the Tisa and Begej River in Serbia. We examined their dependence on anthropogenic impact (frequency of visits), cover of vegetation layers (herbs, shrubs and trees), plant diversity of vegetation layers, area of forest stands, distance to the forest edge, circumference of forest stands, age of forest stands, thickness of litter layer and physico-chemical properties of soil and litter (pH, conductivity, P, N, C, H). Total epigeic activity of harvestman showed significant positive relationship with proportion of N in litter. Community equitability was positively related with species richness of plant communities in shrub layer and negatively related with H content of soil. We did not find any significant correlations between diversity of harvestman communities and measured environmental characteristics.     

Homologous recombination between plasmid and chromosomal DNA in Bacillus subtilis requires approximately 70 bp of homology

Summary To determine the minimal DNA sequence homology required for recombination in Bacillus subtilis, we developed a system capable of distinguishing between homologous and illegitimate recombination events during plasmid integration into the chromosome. In this system the recombination frequencies were measured between is pE194 derivatives carrying segments of the chromosomal -gluconase gene (bglS) of various lengths and the bacterial chromosome, using selection for erythromycin resistance at the non-permissive temperature. Homologous recombination events, resulting in disruption of the bglS gene, were easily detected by a colorimetric assay for -gluconase activity. A linear dependence of recombination frequency on homology length was observed over an interval of 77 bp. It was found that approximately 70 bp of homology is required for detectable homologous recombination. Homologous recombination was not detected when only 25 by of homology between plasmid and chromosome were provided. The data indicate that homology requirements for recombination in B. subtilis differ from those in Escherichia coli.     

An algorithm for adaptive control of dissolved oxygen concentration in batch culture

An effective automatic control algorithm for set-point control of dissolved oxygen concentration in batch culture has been developed. Adaptation of PI controller to the variable state of batch culture is based on analytically obtained functional relations between the controller parameters and the state variables: oxygen uptake rate, stirring speed, and saturation value of dissolved oxygen concentration, which are measured or estimated on-line. Results of experimental investigation of the adaptive control system are presented.     

Zeaxanthin radical cation formation in minor light-harvesting complexes of higher plant antenna

Previous work on intact thylakoid membranes showed that transient formation of a zeaxanthin radical cation was correlated with regulation of photosynthetic light-harvesting via energy-dependent quenching. A molecular mechanism for such quenching was proposed to involve charge transfer within a chlorophyll-zeaxanthin heterodimer. Using near infrared (880-1100 nm) transient absorption spectroscopy, we demonstrate that carotenoid (mainly zeaxanthin) radical cation generation occurs solely in isolated minor light-harvesting complexes that bind zeaxanthin, consistent with the engagement of charge transfer quenching therein. We estimated that less than 0.5% of the isolated minor complexes undergo charge transfer quenching in vitro, whereas the fraction of minor complexes estimated to be engaged in charge transfer quenching in isolated thylakoids was more than 80 times higher. We conclude that minor complexes which bind zeaxanthin are sites of charge transfer quenching in vivo and that they can assume Non-quenching and Quenching conformations, the equilibrium LHC(N) <==> LHC(Q) of which is modulated by the transthylakoid pH gradient, the PsbS protein, and protein-protein interactions.     

The sex-specific association of Met62Ile gene polymorphism in P-selectin glycoprotein ligand (PSGL-1) with carotid plaque presence: preliminary study

Atherosclerosis is known as an inflammatory disease in which a recruitment of leukocytes to the endothelium wall represents a preliminary step of the initiation and the development of disease. The P-selectin glycoprotein ligand (PSGL-1) seems to be the major molecule mediating leukocyte–endothelium interactions and leukocyte rolling on stimulated endothelium. There are limited number of studies reporting on association of Met62Ile SNP in PSGL-1 gene and the risk for atherosclerosis. The aim of this study was to analyze possible association of this polymorphism with an advanced carotid atherosclerosis and biochemical markers of inflammation and haemostasis. The 275 patients consecutively admitted for carotid endarterectomy with stenosis >70% and 256 controls of the same ethnic origin were included in the study. The Met62Ile genotypes were determined by PCR RFLP. The Ile/Ile homozygotes had significantly higher CRP compared to the other genotypes in patients. Female patients had Ile allele dose-dependent association with the carotid plaque presence (Met/Met vs. Met/Ile vs. Ile/Ile; OR 1, OR 2.02, CI 1.0–4.08, OR 4.08, CI 1.0–16.81, respectively, p = 0.04). Our results suggest the impact of PSGL-1 Met62Ile polymorphism on inflammation in advanced atherosclerosis. We observed the sex-differential association of Met62Ile with advanced carotid atherosclerosis. Studies in larger and different populations should validate and further examine the suggested role of genetic variations in PSGL-1 with atherosclerosis and thrombosis.     

The genetic structure of red raspberry (<Emphasis Type="Italic">Rubus idaeus</Emphasis> L.) populations in Lithuania

The red raspberry (Rubus idaeus L.) is widely distributed in Lithuania and occupies a range of habitats. The presence of coadapted gene pools in local populations of R. idaeus is a question of interest not only to plant scientists, but also to plant breeders. In this study, we investigated the genetic structure of R. idaeus and the influence of local habitats on the genetic diversity within and among populations. Nineteen populations of R. idaeus were sampled from different habitats in various agroclimatic subregions of Lithuania, and analyzed using RAPD markers. 113 RAPD bands were identified among 315 individuals; 84.31% of these were polymorphic. The mean values of Shannon’s information index for different populations ranged from 0.341 to 0.455. Nei’s gene diversity established within populations averaged 0.266. An AMOVA revealed 74% of genetic variation among individuals within populations of R. idaeus, and 23% among populations. The remaining genetic variation was distributed among populations from different agroclimatic subregions (3%). The results of this study suggest that the genetic structure of R. idaeus populations in Lithuania may be influenced partially by isolation by distance as well as by local environmental conditions.     

Geochemical parameters of sedimentation and the distribution of Silurian brachiopod communities in Lithuania

Silurian rocks from borehole cores in the Baltic Basic were analyzed for Si, Al, Ti, Fe, Ca and Mg oxide content and chemical data were related to sedimentary environment, lithology and brachiopod community distribution. Evaluation of these relationships enables precise positioning of closely related communities within Boucot's (1975) brachiopod Benthic Assemblages. Preliminary attempts are made to evaluate climatic change based on Al/Ti oxide ratios.     

Evaluation of fungal and yeast diversity in Slovakian wine-related microbial communities

Since the yeast flora of Slovakian enology has not previously been investigated by culture-independent methods, this approach was applied to two most common cultivars Frankovka (red wine) and Veltlin (white wine), and complemented by cultivation. Model samples included grapes, initial must, middle fermenting must and must in the end-fermentation phase. The cultured isolates were characterized by length polymorphism of rDNA spacer two region using fluorescence PCR and capillary electrophoresis (f-ITS PCR), and some were identified by sequencing. The microbial DNA extracted directly from the samples without cultivation was analysed by f-ITS PCR, amplicons were cloned and sequenced. The use of universal fungal primers led to detection of both yeasts and filamentous fungi. The amplicon of highest intensity and present in all the samples corresponded to Hanseniaspora uvarum. Other species demonstrated by both approaches included Saccharomyces sp., Metschnikowia pulcherrima or M. chrysoperlae, Candida zemplinina, Cladosporium cladosporioides, Botryotinia fuckeliana, Pichia anomala, Candida railenensis, Cryptococcus magnus, Metschnikowia viticola or Candida kofuensis, Pichia kluyveri or Pichia fermentas, Pichia membranifaciens, Aureobasidium pullulans, Alternaria alternata, Erysiphe necator, Rhodotorula glutinis, Issatchenkia terricola and Debaryomyces hansenii. Endemism of Slovakian enological yeasts was suggested on the level of minor genetic variations of the known species and probably not accounting for novel species. The prevalence of H. uvarum over Saccharomyces sp. in the samples was indicated. This is the first culture-independent study of Slovakian enology and the first time f-ITS PCR profiling was used on wine-related microbial communities.     

Estimation of tree biomass of Norway spruce forest in the Plešné Lake catchment,the Bohemian Forest

This paper evaluates the total biomass and pools of major nutrients and ecologically important metals of the tree layer in the catchment of Ple?né jezero (PL) in the Bohemian Forest (?umava, Czech Republic), and compares them to analogous data on understory vegetation and soils. The results are based on field measurements and semi-automatic image analyses of aerial orthophotographs. The tree layer was relatively sparse with open canopy in some parts of the catchment. Stand density varied between 44 and 328 individuals per hectare. The catchment weighted mean total biomass of trees was 134 t ha^?1 dry weight, of which needles, branches, roots, and stems represented 5%, 10%, 14%, and 71%, respectively. The stem wood and bark represented 67% and 4%, respectively, of the total tree biomass. The catchment weighted mean element pools were 568 and 3.0 mol m^?2 (i.e., 68 and 0.42 t ha^?1) for C and N, respectively. The other pools were 76 mmol P m^?2, 602 mmol Ca m^?2, 133 mmol Mg m^?2, 39 mmol Na m^?2, 347 mmol K m^?2, 19 mmol Al m^?2, 6.2 mmol Fe m^?2, and 35 mmol Mn m^?2. The element pools accumulated in the tree biomass represented from < 1% (Al, Fe) to 37% (C) of their total pools (soil + tree layer + understory vegetation) in the catchment. Pools of Ca and Mg in the tree biomass were similar to their exchangeable pools in the catchment soils, while those of K were 3 times higher. Nutrient (N, P, Ca, Mg, and K) and C pools in the tree biomass were 2–11 times higher than those in the understory vegetation, with the minimum for P and maximum for C.