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141.
Maud Chan-Yao-Chong Célia Deville Louise Pinet Carine van Heijenoort Dominique Durand Tâp Ha-Duong 《Biophysical journal》2019,116(7):1216-1227
Because of their large conformational heterogeneity, structural characterization of intrinsically disordered proteins (IDPs) is very challenging using classical experimental methods alone. In this study, we use NMR and small-angle x-ray scattering (SAXS) data with multiple molecular dynamics (MD) simulations to describe the conformational ensemble of the fully disordered verprolin homology domain of the neural Aldrich syndrome protein involved in the regulation of actin polymerization. First, we studied several back-calculation software of SAXS scattering intensity and optimized the adjustable parameters to accurately calculate the SAXS intensity from an atomic structure. We also identified the most appropriate force fields for MD simulations of this IDP. Then, we analyzed four conformational ensembles of neural Aldrich syndrome protein verprolin homology domain, two generated with the program flexible-meccano with or without NMR-derived information as input and two others generated by MD simulations with two different force fields. These four conformational ensembles were compared to available NMR and SAXS data for validation. We found that MD simulations with the AMBER-03w force field and the TIP4P/2005s water model are able to correctly describe the conformational ensemble of this 67-residue IDP at both local and global level. 相似文献
142.
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144.
Joumana El-Turk Omorefe Asemota Juliette Leymarie Christophe Sallaud Stéphane Mesnage Colette Breda Dominique Buffard Adam Kondorosi Robert Esnault 《Gene》1996,170(2):213-216
We constructed an alfalfa cDNA library from mRNA extracted from leaves after infection with Pseudomonas syringae (incompatible interaction). Screening with oligodeoxyribonucleotides designed from regions conserved in all known peroxidases allowed the isolation of four cDNAs (MsprxlA, 1B, 1C and 2). Sequence analysis revealed the presence of open reading frames of 351, 355, 358 and 323 amino acids, respectively, with the characteristic consensus sequences of plant peroxidases. Sequence comparison showed that the Msprx2 product is significantly different from the others and, particularly, lacks a C-terminal propeptide which might be required for vacuolar targeting. 相似文献
145.
Grald Perbal Dominique Driss-Ecole 《Biology of the cell / under the auspices of the European Cell Biology Organization》1988,62(3):275-280
Tritiated auxin applied by an agar block on the wheat coleoptile tip for 2 hr was covalently fixed to adjacent protein by treatment with 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (DCC). The density of labelled auxin in the nucleus, the cell wall, the cytoplasm, and the vacuole was determined by autoradiography. Localization of tritiated auxin was studied at high resolution at the tonoplast and the plasmalemma lining the transverse (distal and proximal) and the longitudinal walls. The radioactivity along the tonoplast was always less than along the plasma membrane. The distribution of 3H-auxin was different across the longitudinal and transverse regions of the plasmalemma. The labelling was distributed asymmetrically on the longitudinal plasma membrane with a peak observed on the external surface. Tritiated auxin was distributed more symmetrically on the distal and the proximal plasma membranes. Our results are in agreement with the hypothesis that there are 2 different specific binding sites on the plasmalemma. The ratio of auxin present at the proximal and distal regions of the plasmalemma was 1.28. 相似文献
146.
Nadège Presneau Valérie Laplace-Marieze Valérie Sylvain Alain Lortholary Agnès Hardouin Dominique Bernard-Gallon Y.-J. Bignon 《Human genetics》1998,103(3):334-339
A novel complex mutation consisting of a small deletion/insertion (3958del5ins4) was found in the breast cancer-1 gene (BRCA-1) in three unrelated French breast and/or ovarian cancer families. These mutations occurred at the same nucleotide position
of the 3′ end of exon 11. The wild-type sequence, CTCAG, was deleted and replaced by AGGC in the three families. The consequence
is the generation of a stop codon, TAG, resulting in a truncated protein. We propose two different mechanisms to explain the
generation of this complex mutation: (i) the simultaneous occurrence of a deletion and an insertion in a stem-loop structure
and (ii) the abortive integration of a human transposable element (Tigger 1) that deleted 5 nucleotides and inserted a 4-nucleotide “scar”, corresponding to the 5′ extremity of the transposon.
Received: 26 November 1997 / Accepted: 6 February 1998 相似文献
147.
François Barrieu Dominique Thomas Danièle Marty-Mazars Maryse Charbonnier Francis Marty 《Planta》1998,204(3):335-344
The vacuolar membrane (tonoplast) of plant cells contains aquaporins, protein channels that facilitate the selective transport
of water. These tonoplast intrinsic proteins (TIPs) of 23–29 kDa belong to the ancient major intrinsic protein (MIP) family.
A monospecific polyclonal antiserum directed against a 26 kDa intrinsic protein from the tonoplast of meristematic cells from
cauliflower (Brassica oleracea L. var. botrytis) was used to screen a cDNA library. Two distinct cDNAs have been isolated. Both clones, c26-1 and c26-2, encode closely related TIPs. The c26-1 insert, consisting of 933 bp upstream of the poly(A) tail, is a full-length cDNA with an open reading frame encoding a protein
of 251 amino acids with a calculated Mr of 25 500. The c26-2 insert is a 5′ truncated cDNA. The two cDNAs share 90.5% sequence identity within their overlapping coding regions but only
35% sequence identity in the 3′␣untranslated regions, indicating that highly related TIP-encoding genes are expressed in meristematic
cells. Although TIPs have previously been found in a variety of cell types, they have not been found in meristems. The derived
amino acid sequences (BobTIP26-1 and BobTIP26-2, respectively) closely resemble the aquaporin γ-TIP from Arabidopsis thaliana. Northern blot analysis and in situ hybridization show that BobTIP26 mRNAs preferentially accumulate in highly meristematic cells, mostly before and during cell enlargement, and in the living
cells of the xylem. This differential pattern of expression is also found by immunodetection of BobTIP26 polypeptides. The
gene expression patterns are discussed with respect to the probable function of the gene products.
Received: 27 March 1997 / Accepted: 20 May 1997 相似文献
148.
Navarro Elisabeth Bousquet Jean Moiroud André Munive Antonio Piou Dominique Normand Philippe 《Plant and Soil》2003,254(1):207-217
The nuclear ITS region of 19 species of Alnus was amplified and sequenced. The inferred molecular phylogeny shows that all species of the genus Alnus form a monophyletic group close to Betula and that the fundamental dichotomy within the genus lies between the subgenera Alnaster and Gymnothyrsus, sensu Murai (1964). The subgenus Alnaster appears to be basal in the genus, based on archaism of morphological features, and branching close to the root of the trees due to low ITS divergence from genus Betula. The monophyly of the section Clethropsis is not supported by the present data: Alnus nepalensis is positioned in the subgenus Gymnothyrsus, away from A. nitida and A. maritima. Surprisingly, A. formosana sect. Japonicae is closely tied to A. maritima sect. Clethropsis, with which it shares few morphological traits, and is separate from A. japonica sect. Japonicae with which it shares many traits. An increase in substitution rate is noted in the group comprising A. formosana, A. maritima and A. nitida relative to the rest of the genus, which appears to have had, on the average, a very slow mutation rate. Alnus
glutinosa, the designated type for the genus, appears to be representative of the genus both for morphological characters and evolutionary rate. North-East Asia is comforted in its position of origin of the genus since not only does it have the highest number of species and representatives in all deep branching lineages, there are also fewer transcontinental migrations when a North-East Asian ancestor is postulated than when a North American ancestor is postulated. 相似文献
149.
150.
Role of the chemokine stromal cell-derived factor 1 in autoantibody production and nephritis in murine lupus 总被引:6,自引:0,他引:6
Balabanian K Couderc J Bouchet-Delbos L Amara A Berrebi D Foussat A Baleux F Portier A Durand-Gasselin I Coffman RL Galanaud P Peuchmaur M Emilie D 《Journal of immunology (Baltimore, Md. : 1950)》2003,170(6):3392-3400
In normal mice, stromal cell-derived factor 1 (SDF-1/CXCL12) promotes the migration, proliferation, and survival of peritoneal B1a (PerB1a) lymphocytes. Because these cells express a self-reactive repertoire and are expanded in New Zealand Black/New Zealand White (NZB/W) mice, we tested their response to SDF-1 in such mice. PerB1a lymphocytes from NZB/W mice were exceedingly sensitive to SDF-1. This greater sensitivity was due to the NZB genetic background, it was not observed for other B lymphocyte subpopulations, and it was modulated by IL-10. SDF-1 was produced constitutively in the peritoneal cavity and in the spleen. It was also produced by podocytes in the glomeruli of NZB/W mice with nephritis. The administration of antagonists of either SDF-1 or IL-10 early in life prevented the development of autoantibodies, nephritis, and death in NZB/W mice. Initiation of anti-SDF-1 mAb treatment later in life, in mice with established nephritis, inhibited autoantibody production, abolished proteinuria and Ig deposition, and reversed morphological changes in the kidneys. This treatment also counteracted B1a lymphocyte expansion and T lymphocyte activation. Therefore, PerB1a lymphocytes are abnormally sensitive to the combined action of SDF-1 and IL-10 in NZB/W mice, and SDF-1 is key in the development of autoimmunity in this murine model of lupus. 相似文献