Genetic variation and quasi-species.

During the past year the relative fitness, that is, overall replication ability, and the fitness gain of animal virus variants have been quantified, providing new insight into the dynamics for the generation of RNA virus quasi-species. Measurements of mutant frequencies and rates of genetic diversification have confirmed the extreme complexity of RNA virus and retrovirus populations.     

Structural Changes of Ag+�CNa+ Annealed Ion-Exchanged Silicate Glasses Scanning Electron Microscopy, Far-Infrared Reflectivity, UV-Visible Absorption, and TEM Investigation

The effect of silver ionic exchange on the glass structure in a molten bath at 350 °C was presented in a previous paper Catan et al. [1] (J NonCryst Solids 354:1026–1031, 2008). In this paper, the experiment is driven for a temperature near 310 °C, the eutectic of a 10% AgNO₃–NaNO₃ molten salt. The various exchanged silicate glasses are further annealed to obtain silver particles in the matrix. Infrared spectroscopy combined with UV/Visible spectroscopy and scanning electron microscopy analysis allowed to correlate the silver-ion penetration and particle formation with the degree of polymerisation of the silicate network. The previous results have demonstrated an insertion of silver ions in the glass structure that is about 10% higher than the departure of sodium ions. Infrared results obtained after ion exchange have proved that local alterations lead to a higher degree of depolymerisation of the silicate network. Here, the annealing of the samples promotes the formation of silver nanoparticles, the infrared measurements prove that the aggregation is correlated to a repolymerisation of the silicate network. Transmission electron microscopy (TEM) is used to evaluate the distribution size of the silver particles after annealing and to correlate it to the evolution of the absorption curves. The TEM observations prove that the particle are below the incident wavelength but shape factor could lead to scattering contribution when particle growths and to absorption spectra evolution.     

Genetic variability of Hong Kong (H3N2) influenza viruses: spontaneous mutations and their location in the viral genome

The genetic heterogeneity of five influenza A (H3N2) strains isolated between 1968 and 1977 has been estimated by T1-oligonucleotide fingerprinting of 32P-labeled viral RNA. Assuming that the large T1-resistant oligonucleotides represent a random sample of the viral RNA, the genetic differences observed would affect 0.3 to 10.7% of the RNA positions of the genes studied, depending on the pair of viruses considered. A smaller degree of genetic heterogeneity was observed when six coetaneous viral samples were compared. The distribution of spontaneous mutations among the viral genes was studied by fingerprinting individual RNA segments isolated either by gel electrophoresis or hybridization with plasmids containing influenza-specific DNA sequences. No statistically significant differences were detected in the distribution of mutations among the viral genes studied. The mutation frequency at the hemagglutinin RNA region coding for the HA1 subunit was found to be two times higher than that at the region encoding that HA2 subunit. Our results suggest that the antigenic variability of influenza viruses may be a consequence of a general genetic variability which effects many of the viral genes.     

Factors affecting the drinking behavior of black howler monkeys (Alouatta pigra)

Water is essential for animals, and is particularly critical for thermoregulation. Animals obtain water from three main sources, free water, water contained in food, and water produced in the body during metabolism. Howler monkeys (Alouatta spp.) spend a small proportion of their time drinking water and some populations have not been observed drinking, suggesting they obtain most of their water requirements in food or by metabolism. However, when howler monkeys have been observed drinking there is evidence suggesting the drinking is associated with low precipitation, temperature, and fruit consumption, and high mature leaf consumption, although it remains unclear which factors determine drinking by this genus. In this study we tested the hypothesis that drinking by howler monkeys results from increased hydration requirements in drier climates and from lower consumption of foods rich in water (e.g., new leaves, fruit). We tested this hypothesis by comparative analysis of 14 groups of Yucatán black howler monkeys (A. pigra) living under different climatic conditions. From April 2005 to November 2008 we collected a total of 3,747.2 focal observation hours of the feeding and drinking behavior of 60 individuals, with data on ambient temperature and rainfall. Individuals spent more time drinking when they lived in habitats with higher maximum temperature and when they consumed more mature leaves. For this species, therefore, drinking seems to be linked to heat stress and a low availability of water in ingested food.     

Spatial and temporal dynamics of a freshwater eukaryotic plankton community revealed via 18S rRNA gene metabarcoding

The Brazilian Environmental Ministry (MMA) released a report in 2016 listing 163 non-native species into Brazilian inland waters. Reservoirs are among the freshwater habitats most frequently associated with the release of non-native species. Therefore, the aim of the present study was to evaluate the occurrence and distribution of the non-native species listed by the MMA, in large Brazilian reservoirs (≥ 30 km²). Further, we have tested the hypothesis that beta diversity of non-native species within reservoirs from the same basin is lower than those among reservoirs from distinct basins. A literature search was performed for 70 Brazilian reservoirs, resulting in the records of 91 non-native species. Reservoirs from the Paraná basin showed the highest number of occurrences, with 33 non-native species recorded only in the Itaipu reservoir. Beta diversity of non-native species showed higher variability among reservoirs from different basins than those within the same basin. Some basins were also distinguished by their composition of non-native species, as supported by the IndVal index. Non-native species were widespread along Brazilian reservoirs, and their distribution can be even higher than reported.     

Studies on antigenic variability of C strains of foot-and-mouth disease virus by means of synthetic peptides and monoclonal antibodies.

Peptides representing the sequence of the immunodominant loop of foot-and-mouth disease virus strain C-S8 (YTASARGDLAHLTTTHARHLP, residues 136-156 of VP1) and of several variant viruses have been prepared by solid phase methods. In addition, five peptides with single-residue replacements at Leu147 (Ile, Nle, Val, Ala, Gly) have been synthesized. Tosyl and dinitrophenyl protections for histidine have been compared, the latter being found to give better synthetic products. The peptides have been tested in an immunodot assay against a panel of monoclonal antibodies directed towards the VP1 loop. Immunochemical results are discussed on the basis of the mobility of the region reproduced by the peptides and the nature of the side chain of residue 147.     

HKT2;2/1, a K(+) -permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism

We have investigated OsHKT2;1 natural variation in a collection of 49 cultivars with different levels of salt tolerance and geographical origins. The effect of identified polymorphism on OsHKT2;1 activity was analysed through heterologous expression of variants in Xenopus oocytes. OsHKT2;1 appeared to be a highly conserved protein with only five possible amino acid substitutions that have no substantial effect on functional properties. Our study, however, also identified a new HKT isoform, No-OsHKT2;2/1 in Nona Bokra, a highly salt-tolerant cultivar. No-OsHKT2;2/1 probably originated from a deletion in chromosome 6, producing a chimeric gene. Its 5' region corresponds to that of OsHKT2;2, whose full-length sequence is not present in Nipponbare but has been identified in Pokkali, a salt-tolerant rice cultivar. Its 3' region corresponds to that of OsHKT2;1. No-OsHKT2;2/1 is essentially expressed in roots and displays a significant level of expression at high Na(+) concentrations, in contrast to OsHKT2;1. Expressed in Xenopus oocytes or in Saccharomyces cerevisiae, No-OsHKT2;2/1 exhibited a strong permeability to Na(+) and K(+) , even at high external Na(+) concentrations, like OsHKT2;2, and in contrast to OsHKT2;1. Our results suggest that No-OsHKT2;2/1 can contribute to Nona Bokra salt tolerance by enabling root K(+) uptake under saline conditions.