Effects of Landscape Composition on Winter Survival of Northern Bobwhites

Abstract: In a manipulative experiment, we tested effects of select elements of landscape structure and composition on winter survival of northern bobwhites (Colinus virginianus) at Ames Plantation, Tennessee, USA. We hypothesized that abundance of closed canopy forested habitats (52% of the landscape) on Ames diminished usable space for bobwhite and provided usable space for a suite of important predators, thereby contributing to low winter survival. To test this hypothesis we divided a 2,217-ha portion of the property into 4 approximately equal areas. We altered landscape structure and composition by converting approximately 33% of the timber to early successional herbaceous plant communities on 2 treatment sites, which reduced percentage of landscape and edge density of closed canopy forest and increased percentage of landscape in early successional herbaceous communities, and left 2 control sites in their former composition. During one pretreatment year (1998–1999) and 3 posttreatment years (1999–2000, 2000–2001, 2001–2002), we estimated winter (15 Oct-10 Apr) survival on treatment and control sites from a radiomarked sample of 920 bobwhites. We used Cox Proportional Hazard models to test for effects of treatment (forest conversion) and covariates describing landscape structure and composition (% closed canopy forest, % early successional herbaceous, wooded edge density) on winter survival at multiple spatial scales. Winter survival on the treatment sites pooled across the 4 winter seasons was 41% compared to 32% for control sites. Additionally, for each 1 m/ha increase in closed canopy woods edge density within winter covey ranges, risk of mortality increased 0.3%. Our results suggest composition at the landscape scale and landscape structure at the local scale influence winter survival of bobwhite. Management strategies that alter composition and structure and increase usable space may be effective in mitigating winter mortality thereby altering population trajectories. Typical bobwhite management plans focus on improving quality of herbaceous vegetation structure within existing herbaceous patches, however, population processes may work at larger spatial scales influencing design and implementation of conservation programs.     

Scale-independent criteria and scale-dependent agents determining the structure of a ground cricket mosaic hybrid zone (Allonemobius socius – Allonemobius fasciatus)

The structure of the hybrid zone between the ground crickets, Allonemobius socius and Allonemobius fasciatus , approximates an environmental mosaic based on temperature/moisture at regional spatial scales. In the present study, we show that the micro-geographic spatial structure (i.e. single fields) of this hybrid zone is governed by the same criteria. Thus, the criteria that structure this hybrid zone are scale independent, even though the agents that implement these criteria may differ at various scales (climate, latitude, and elevation at regional scales; grass height, slope aspect, and field use at micro-geographic scales). Additionally, the study demonstrates a previously unknown barrier to genetic exchange in this system that acts before conspecific sperm precedence.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 777–796.     

POPULATION DENSITY-PHYSICAL CONDITION RELATIONSHIPS IN WHITE-TAILED DEER

Abstract: Management of white-tailed deer (Odocoileus virginianus) populations is important because of the popularity of this species for sport hunting and the ecological and economic damage deer can cause. Managers traditionally have collected data from hunter-harvested deer to provide information for making these harvest management decisions. We tested for predictive relationships between these data and density using long-term (15–31 years duration, median = 26 years) harvest data for 9 populations in the southeastern United States that spanned several physiographic provinces and a wide range of densities (3–32 deer/km²) that varied by a factor of 1.67–5.50 within populations over the study period. Mean annual harvest for these populations ranged from 265–5,242 animals (median = 626). We tested 8 physical and 3 recruitment measures commonly collected on harvested deer for their relationship to reconstructed herd density estimates using correlation and linear regression models. Yearling male dressed body weights (range of average annual sample sizes: 53–260, median = 146) proved to be the parameter most consistently (7 of 9 populations) related to density (P < 0.05) among those tested. Yearling antler points (sample sizes the same as for yearling male weights) and yearling female dressed body weights (range of average annual sample sizes: 17–126, median = 72) also were related to density (P < 0.05). The most appropriate models were based on 2-year lags for density. Three-year running averages for both dependent and independent variables were used to smooth annual variability. Using data from 3 additional, independent populations validated that predicted and observed densities were highly correlated (r = 0.71–0.96; P < 0.01). The efficacy of time lags should serve to caution managers not to look for immediate responses in herds. The populations examined in this study provided long-term data that captured stochasticity resulting from density-independent factors. Despite any potential impact from these factors, we detected significant density-dependent relationships.     

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

Background  

Reversible phosphorylation of proteins is involved in a wide range of processes, ranging from signaling cascades to regulation of protein complex assembly. Little is known about the structure and evolution of phosphorylation networks. Recent high-throughput phosphoproteomics studies have resulted in the rapid accumulation of phosphopeptide datasets for many model organisms. Here, we exploit these novel data for the comparative analysis of phosphorylation events between different species of eukaryotes.     

Physico-chemical water characteristics and aquatic macroinvertebrates of Lake Tsimanampesotse,south-western Madagascar

Saline lakes are known to be amongst the most productive ecosystems in the world. Tsimanampesotse, a ‘conservation hotspot’ soda lake in southwestern Madagascar, was integrated into the Ramsar wetland network in 1998. Despite its importance for aquatic birds, knowledge of its water characteristics and aquatic biota is scarce. Water quality and aquatic invertebrates were investigated in April and August 2013 to provide baseline data in order to measure possible changes of the area in the future. Changes in water temperature (19.5–25.9 °C) and in dissolved oxygen (9.3–11.3 mg l^?1) were detected. The water was highly mineralised (EC > 41 000 µS cm^?1) and moderately alkaline (pH ～ 8.0). The maximum concentrations of ammonia and phosphate were relatively high (39.1 and 57.6 mg l^?1, respectively). Freshwater runoff from the plateau makes the water quality in the eastern part of the lake better than that in the west. Of the 15 taxa of macroinvertebrate assessed, the crustaceans Grandidierella mahafalensis and Apseudes thaumastocheles were dominant. Decreased water salinity in April increased the abundance and diversity of macroinvertebrates. Despite its incorporation to the protected area, Lake Tsimanampesotse is still impacted by human activities and needs supplementary preservation.     

Structure, expression, and developmental function of early divergent forms of metalloproteinases in Hydra

Metalloproteinases have a critical role in a broad spectrum of cellular processes ranging from the breakdown of extracellular matrix to the processing of signal transduction-related proteins. These hydrolytic functions underlie a variety of mechanisms related to developmental processes as well as disease states. Structural analysis of metalloproteinases from both invertebrate and vertebrate species indicates that these enzymes are highly conserved and arose early during metazoan evolution. In this regard, studies from various laboratories have reported that a number of classes of metalloproteinases are found in hydra, a member of Cnidaria, the second oldest of existing animal phyla. These studies demonstrate that the hydra genome contains at least three classes of metalloproteinases to include members of the 1) astacin class, 2) matrix met-alloproteinase class, and 3) neprilysin class. Functional studies indicate that these metalloproteinases play diverse and important roles in hydra morphogenesis and ce     

Would transformation of C3 crop plants with foreign Rubisco increase productivity? A computational analysis extrapolating from kinetic properties to canopy photosynthesis

Genetic modification of Rubisco to increase the specificity for CO₂ relative to O₂ (τ) would decrease photorespiration and in principle should increase crop productivity. When the kinetic properties of Rubisco from different photosynthetic organisms are compared, it appears that forms with high τ have low maximum catalytic rates of carboxylation per active site (k^c_c). If it is assumed that an inverse relationship between k^c_c and τ exists, as implied from measurements, and that an increased concentration of Rubisco per unit leaf area is not possible, will increasing τ result in increased leaf and canopy photosynthesis? A steady‐state biochemical model for leaf photosynthesis was coupled to a canopy biophysical microclimate model and used to explore this question. C₃ photosynthetic CO₂ uptake rate (A) is either limited by the maximum rate of Rubisco activity (V_cmax) or by the rate of regeneration of ribulose‐1,5‐bisphosphate, in turn determined by the rate of whole chain electron transport (J). Thus, if J is limiting, an increase in τ will increase net CO₂ uptake because more products of the electron transport chain will be partitioned away from photorespiration into photosynthesis. The effect of an increase in τ on Rubisco‐limited photosynthesis depends on both k^c_c and the concentration of CO₂ ([CO₂]). Assuming a strict inverse relationship between k^c_c and τ, the simulations showed that a decrease, not an increase, in τ increases Rubisco‐limited photosynthesis at the current atmospheric [CO₂], but the increase is observed only in high light. In crop canopies, significant amounts of both light‐limited and light‐saturated photosynthesis contribute to total crop carbon gain. For canopies, the present average τ found in C₃ terrestrial plants is supra‐optimal for the present atmospheric [CO₂] of 370 µmol mol^?1, but would be optimal for a CO₂ concentration of around 200 µmol mol^?1, a value close to the average of the last 400 000 years. Replacing the average Rubisco of terrestrial C₃ plants with one having a lower and optimal τ would increase canopy carbon gain by 3%. Because there are significant deviations from the strict inverse relationship between k^c_c and τ, the canopy model was also used to compare the rates of canopy photosynthesis for several Rubiscos with well‐defined kinetic constants. These simulations suggest that very substantial increases (> 25%) in crop carbon gain could result if specific Rubiscos having either a higher τ or higher k^c_c were successfully expressed in C₃ plants.     

Scanning transmission X-ray microscopy study of microbial calcification

Calcium phosphates and calcium carbonates are among the most prevalent minerals involved in microbial fossilization. Characterization of both the organic and mineral components in biomineralized samples is, however, usually difficult at the appropriate spatial resolution (i.e. at the submicrometer scale). Scanning transmission X‐ray microscopy (STXM) was used to measure C K‐edge, P L‐edge, and Ca L‐edge near‐edge X‐ray absorption fine structure (NEXAFS) spectra of some calcium‐containing minerals common in biomineralization processes and to study the experimental biomineralization by the model microorganism, Caulobacter crescentus. We show that the Ca L_2,3‐edges for hydroxyapatite, calcite, vaterite, and aragonite are unique and can be used as probes to detect these different mineral phases. Using these results, we showed that C. crescentus cells, when cultured in the presence of high calcium concentration, precipitated carbonate hydroxyapatite. In parallel, we detected proteins, polysaccharides, and nucleic acids in the mineralizing bacteria at the single‐cell scale. Finally, we discussed the utility of STXM for the study of natural fossilized microbial systems.