RBSim 2: simulating the complex interactions between human movement and the outdoor recreation environment

This paper describes advancements in recreation management using new technology that couples Geographic Information Systems (GIS) with Intelligent Agents to simulate recreation behaviour in real world settings. RBSim 2 (Recreation Behaviour Simulator) is a computer simulation program that enables recreation managers to explore the consequences of change to any one or more variables so that the goal of accommodating increasing visitor use is achieved while maintaining the quality of visitor experience. RBSim provides both a qualitative understanding of management scenarios by the use of map graphics from a GIS as well as a quantitative understanding of management consequences by generating statistics during the simulation. Managers are able to identify points of over crowding, bottlenecks in circulation systems, and conflicts between different user groups.

RBSim 2 is a tool designed specifically for the purposes of simulating human recreation behaviour in outdoor environments. The software is designed to allow recreation researchers and managers to simulate any recreation environment where visitors are restricted to movement on a network (roads, trails, rivers, etc.). The software architecture is comprised of the following components:

• GIS module to enter travel network, facilities, and elevation data

• Agent module to specify tourist personality types, travel modes, and agent rules

• Typical Trip planner to specify trips as an aggregation of entry/exit nodes, arrival curves, destinations and agents.

• Scenario designer to specify combinations of travel networks, and typical trip plans.

• Statistical module to specify outputs and summarise simulation results

This paper describes the RBSim software architecture with specific reference to the trip planning algorithms used by the recreation agents. An application of the simulator at Port Campbell National Park, Victoria Australia is described.     

Spectroscopic and electron micrographic studies on the repeat tetrapeptide of tropoelastin: (Val-Pro-Gly-Gly)n

The polytetrapeptide repeat of tropoelastin, Val₁-Pro₂-Gly₃-Gly₄, coacervates from aqueous solution as temperature increases. The coacervation is a cooperative process which is concentration dependent, moving the temperature profile of coacervation curves to lower temperature with high concentrations. Electron micrographs of uranyl acetate or uranyl acetate-oxalic acid negatively stained coacervated samples are characterized by filamentous structures whose center-to-center diameter is approximately 50 Å as measured with optical diffraction. Coacervation thus results in increased intermolecular order. Circular dichroism spectra in methanol and trifluoroethanol solutions are significantly different from the spectrum in water. Once coacervated, though, the polytetrapeptide gave a CD spectrum very similar to that seen in these organic solvents. The data support the point of view that coacervation is the result of hydrophobic association attending an inverse temperature transition.     

Tools of the trade: diagnostics and research in domestic animal cytogenetics

This paper describes the most common cytogenetic techniques we routinely adopt in our laboratories for producing high-resolution banding on prometaphase stage chromosomes, from synchronized or nonsynchronized blood cultures. Special emphasis is given to the FISH procedures applied to prometaphase chromosomes for mapping purposes. Each section includes historical information, basic principles for the given technique, its primary use in veterinary cytogenetics, and major limitations. Supplementary material (protocols and chemicals used) are available on our website. Even though these techniques mainly refer to the Bovidae, they can be easily extended and adapted to members of other taxa.     

Biochemical characterization and epididymal localization of the maturation-dependent ram sperm surface antigen ESA152

We examine here the biochemical properties and epididymal localization of a maturation dependent ram sperm surface antigen. A monoclonal antibody, ESA152, identifies an antigen that is present on the surface of ejaculated sperm, but is absent from testicular sperm. Crosslinking of the ESA152 antigen with bivalent antibodies induces the acrosome reaction, redistributing the antigen into the anterior region of the sperm head where it associates with the fusion product of the plasma membrane and the outer acrosomal membrane. The ESA152 antigen appears as a polypeptide of 18 kDa on immunoblots of SDS-polyacrylamide gels. The ESA152 epitope includes the sialic acid termini of N-linked oligosaccharides, as shown by its sensitivity to neuraminidase and endoglycosidase F. The ESA152 antigen is a highly hydrophobic integral membrane protein that resists aqueous extraction, partitions into the detergent phase of Triton-X-114, and solubilizes in chloroform-methanol mixtures. The anchoring of ESA152 is unaffected by phosphtidylinositol specific phospholipase C. The antigen is absent from extracts of caput and corpus epididymidis but appears abruptly in the first segment of the cauda. Immunofluorescence reveals that the ESA152 epitope first appears in clusters of cells in the luminal epithelium of the proximal cauda, prior to or concurrent with its appearance on sperm. © 1993 Wiley-Liss, Inc.     

Functional morphology of Tethya species (Porifera): 2. Three-dimensional morphometrics on spicules and skeleton superstructures of T. minuta

The biomechanics of body contraction in Porifera is almost unknown, although sponge contraction has been observed already in ancient times. Some members of the genus Tethya represent the most contractile poriferan species. All of them show a highly ordered skeleton layout. Based on three main spicule types, functional units are assembled, termed skeleton superstructures here. Using synchrotron radiation based x-ray microtomography and quantitative image analysis with specially developed particle and structure recognition algorithms allowed us to perform spatial allocation and 3D-morphometric characterizations of single spicules and skeleton superstructures in T. minuta. We found and analyzed three skeleton superstructures in the investigated specimen: (1) 85 megasclere bundles, (2) a megaster sphere, composed by 16,646 oxyasters and (3) a pinacoderm–tylaster layer composed by micrasters. All three skeleton superstructures represent composite materials of siliceous spicules and extracellular matrix. From structure recognition we developed an abstracted mathematical model of the bundles and the sphere. In addition, we analyzed the megaster network interrelation topology and found a baso-apical linear symmetry axis for the megaster density inside the sphere. Based on our results, we propose a hypothetical biomechanical contraction model for T. minuta and T. wilhelma, in which the skeleton superstructures restrain physical stress generated by contraction in the tissue. While skeletal structures within the genus Tethya have been explained using R. Buckminster Fullers principle of tensegrity by other authors, we prefer material science based biomechanical approaches, to understand skeletal superstructures by referring to their composite material properties.Electronic Supplementary Material Supplementary material is available to authorised users in the online version of this article at .     

Adjuvant adoptive immunotherapy with tumour-infiltrating lymphocytes and modulated doses of interleukin-2 in 22 patients with melanoma, colorectal and renal cancer, after radical metastasectomy, and in 12 advanced patients

 Adoptive tumour infiltrating lymphocytes (TIL) in combination with a modulated dosage of interleukin-2 (IL-2) can be used with acceptable toxicity in the treatment of immunogenic tumours. Following an experience of reinfusion in advanced melanoma, colorectal and renal cancer patients, treatment was given to disease-free patients after metastasectomy. The high risk of relapse and favourable ratio between reinfused TIL and possible microscopic residual disease determined this choice of adjuvant treatment. A group of 12 patients with advanced disease (7 melanoma, 4 colorectal carcinoma, 1 kidney carcinoma) were treated with TIL (median 5.8×10¹⁰ cells) and IL-2 (West’s schedule) modulated towards a lower dosage (from 12 to 6 MIU/day) in order to maintain an acceptable level of toxicity. As treatment was well tolerated, it was offered to another 22 patients in an adjuvant setting after metastasectomy (11 melanoma, 10 colorectal carcinoma, 1 renal cancer), the median dose of TIL reinfused being 4.95×10¹⁰ cells. No objective response was observed in advanced patients: all patients progressed after a median of 1.5 months (0–8 months) and median survival was 8 months (3–22+ months). Thirteen patients from the second group are still disease-free after a median of 23+ months (9+–47+ months). The remaining 9 patients relapsed after a median of 5 months (3–18 months). Toxicity was moderate as clinical and hepatic/renal function parameters were used to assess the need for dose reductions. Consequently, there was great diversity in IL-2 dosages administered. In particular, there seemed to be a difference in IL-2 doses administered between disease-free cases and those who progressed (17.5 MIU/day versus 7 MIU/day in melanoma patients; 11.2 MIU/day versus 7.1 MIU/day in colorectal cancer patients). By contrast, no differences were observed between number of TIL reinfused and clinical response. Phenotypical characteristics of reinfused TIL were similar to those reported in the literature: 97% were CD3 and 92% were CD8. Aspecific cytolytic activity was evaluated on 12 cases whereas, in 2 melanoma cases, autologous tumour tissue was available for the specific cytotoxicity test. Perforin levels in TIL measured at the end of culture were generally high or very high. Cytokine levels were measured on the supernatant at the end of culture, with an estreme variability in results. Finally, ζ chain and p56^lck were histologically assessed on the resected tissue from which TIL were cultivated. There were virtually none of the former and a complete absence of the latter, which concurs with data reported in the literature. The same immunocytochemical analysis was carried out on TIL at the end of culture. This time an almost complete restoration of both functions was seen, especially in melanoma patients, who are still free from disease. The study is on-going and it has been decided to focus on disease-free patients after metastasectomy in order to increase the number and possibility of clinical and histological correlations.     

Microsatellite instability and mutations of p53 and TGF-‚ RII genes in gastric cancer

To investigate the molecular mechanism of gastric carcinogenesis, we analyzed genetic instability and p53 gene mutations in 40 primary gastric carcinomas. Tumor samples were from untreated patients with no family history suggestive of genetic predisposition to cancer. We screened six microsatellite loci by the polymerase chain reaction (PCR) method, and exons 5–8 of the p53 gene by the PCR-based denaturing gradient gel electrophoresis and sequencing techniques. Microsatellite instability was detected in 32.5% (13/40), and gene mutations in 40% (16/40), of the tumors analyzed. No statistically significant associations were found between genetic alterations and clinico-pathological variables (with the exception of diffusion of lymph node metastases, which was inversely associated with the presence of microsatellite alterations; P < 0.01). Interestingly, a negative association was found between genetic instability and p53 gene mutations: 11 out of 13 tumors showing instability proved to carry a nonmutated p53 gene versus 2/13 carrying a mutated gene (P = 0.03). These observations suggest that genetic instability and p53 gene mutations play a crucial role in the gastric carcinogenic process, but likely act through distinct pathways during cancer development. However, genetic instability is not in and of itself neoplastic. Therefore, we investigated whether insertion/deletion mutations of the polyadenine tract within the transforming growth factor-β type II receptor gene (TGF-βRII) were frequently present in gastric tumors with an RER+ (replication error) phenotype. We found RII mutations in 8/40 (20%) samples: mutations were present in 7/13 (54%) RER+ tumors versus 1/27 (4%) RER– cases (P < 0.001). Received: 14 May 1996 / Revised: 13 June 1996     

The use of molecular assays to identify plant pathogenic organisms vectored by biological control agents

The planthopper Prokelisia marginata VanDuzee (Homoptera: Delphacidae) has beenconsidered for the biological control of theweed Spartina alterniflora Loisel(Poaceae) in Willapa Bay, Washington, U.S.A. Prokelisia marginata is a stenophagousphloem-feeding insect with the potential totransmit bacterial plant diseases that could bemoved by less-specific vectors to other plantspecies. Initial assays with PCR primers thatare putatively specific for phytoplasmas gavepositive results in Spartina. However,subsequent analyses did not indicate thetransmission of the pathogen by theplanthopper. We sequenced the 16S ribosomalRNA (rRNA) gene of the bacterial species thatgave positive results in PCR. Comparisons withsequences available in GenBank suggested thatthe positive results using the putativelyspecific PCR primers were due to the presenceof such bacteria as Pseudomonas, Holomonas, Vibrio, and Acinetobacter. We did not find phytoplasmasin either Spartina or the planthopperP. marginata.