The mechanism of Single strand binding protein–RecG binding: Implications for SSB interactome function

The Escherichia coli single‐strand DNA binding protein (SSB) is essential to viability where it functions to regulate SSB interactome function. Here it binds to single‐stranded DNA and to target proteins that comprise the interactome. The region of SSB that links these two essential protein functions is the intrinsically disordered linker. Key to linker function is the presence of three, conserved PXXP motifs that mediate binding to oligosaccharide‐oligonucleotide binding folds (OB‐fold) present in SSB and its interactome partners. Not surprisingly, partner OB‐fold deletions eliminate SSB binding. Furthermore, single point mutations in either the PXXP motifs or, in the RecG OB‐fold, obliterate SSB binding. The data also demonstrate that, and in contrast to the view currently held in the field, the C‐terminal acidic tip of SSB is not required for interactome partner binding. Instead, we propose the tip has two roles. First, and consistent with the proposal of Dixon, to regulate the structure of the C‐terminal domain in a biologically active conformation that prevents linkers from binding to SSB OB‐folds until this interaction is required. Second, as a secondary binding domain. Finally, as OB‐folds are present in SSB and many of its partners, we present the SSB interactome as the first family of OB‐fold genome guardians identified in prokaryotes.     

Mapping and characterization of major QTL for spike traits in common wheat

Physiology and Molecular Biology of Plants - The spike traits of wheat can directly affect yield. F2 and F2:3 lines derived from the cross of the multi-spikelet female 10-A and the uni-spikelet...     

极小种群野生植物坡垒的生境特征及其对幼苗多度的影响

极小种群野生植物坡垒(Hopea hainanensis)曾经是热带低地雨林的优势种, 但由于商业采伐和刀耕火种等严重人类干扰及自然更新困难, 致使其种群数量急剧下降到最小可存活的界限, 急需开展种群的拯救恢复工作。而对于坡垒生境适宜性及更新限制的了解, 是进行种群保护及恢复的基础。本文在对野生坡垒种群及其生境因子调查测定的基础上, 分析了生物与非生物生境特征及其对坡垒种群更新幼苗多度的影响。结果表明: 坡垒种群从幼苗至幼树阶段存在着严重的增补限制。坡度小、土壤含水量和有效磷含量高、母株胸径和冠幅较大、伴生种胸高断面积中等的环境是坡垒幼苗较为适宜的生境, 且坡垒幼苗多度与坡度及土壤pH值显著负相关, 与土壤含水量及土壤全磷含量显著正相关。这些研究结果为极小种群野生植物坡垒的就地保护与种群复壮提供了科学依据。     

西双版纳国家级自然保护区蚂蚁-树互作网络空间变异

网络分析(network analysis)可以同时分析群落中的物种多样性和种间关系, 为了解生态群落的稳定性机制提供了新的分析思路和方法。本研究从西双版纳国家级自然保护区的纳板河、勐仑和勐腊(补蚌)三个地点采集了树栖性蚂蚁及树木的种类和数量数据, 对蚂蚁-树组成的二分网络进行了分析, 探讨了3个采样点物种的多样性、网络指标以及群落指标之间的关系。我们采用零模型的方法比较了3个样点的标准化网络参数差异。结果表明: 蚂蚁和树木的物种数以及树的异质性指数(Shannon-Wiener多样性指数、Simpson多样性指数)都呈现出勐仑 > 纳板河 > 补蚌的趋势。树木-蚂蚁的灭绝曲线系数大小关系同样为勐仑 > 纳板河 > 补蚌, 灭绝曲线与树的物种数及异质性指数大小趋势一致, 而与蚂蚁的异质性指数并不吻合。根据Z值的绝对值来看, 网络参数(加权嵌套性、平均连接数、特化水平、模块性、连接度)与群落参数(灭绝曲线系数、生态位重叠)的大小趋势相同, 表现出勐仑 > 纳板河 > 补蚌的趋势。综上所述, 蚂蚁-树互作网络的稳定性(灭绝曲线系数)主要由树的数量和异质性指数决定。网络的加权嵌套性和网络中节点的平均连接数也能促进群落的稳定性。而在一个特化的(数值越大表示专性互作越多)和模块化(具有较多密切互作的节点单元)的网络中, 当低营养级物种灭绝时高营养级物种数量将迅速减少。     

Deep rice root systems reduce methane emissions in rice paddies

Plant and Soil - Phosphorus (P) mobility depends on the availability of water in soil, both of which are limited resources for crop production. We studied the mechanisms governing tolerance to...     

Ligustrazine inhibits the proliferation and migration of ovarian cancer cells via regulating miR-211

Ovarian cancer (OC) is a commonly diagnosed female cancer. Ligustrazine (LSZ), a natural compound, has been reported to exert anti-cancer activity, although the mechanisms underlying the anti-cancer effects are not clear. The present study investigated the impact of LSZ on cell proliferation and migration by regulating microRNA-211 (miR-211) expression using the human ovarian cancer SK-OV-3 and OVCAR-3 cell lines. OC cells were treated with 0, 0.5, 1, and 2 mM LSZ, and quantitative real-time PCR was utilized to measure miR-211 levels in SK-OV-3 and OVCAR-3 cells with different treatment. Moreover, to further confirm the roles of miR-211 in LSZ induced anti-tumor effects, miR-211 expression was inhibited by transfection of miR-211 inhibitors in SK-OV-3 cells. Cell proliferation of transfected cells was evaluated using the CCK-8 and colony formation assay. The scratch assay was employed to assess cell migration and transwell assay was performed for evaluating the cell invasion. Protein levels of epithelial–mesenchymal transition (EMT) markers were determined by Western blotting. We found that LSZ inhibited the viability, proliferation, migration and invasion ability of SK-OV-3 and OVCAR-3 cells in a dose-dependent manner; moreover, LSZ could significantly increase the expression of miR-211 in both SK-OV-3 and OVCAR-3, and knockdown of miR-211 in SK-OV-3 cells partially abrogated the anti-tumor behavior of LSZ by promoting the viability, proliferation, migration, invasion and EMT of SK-OV-3 cells. Thus, we found that LSZ can inhibit the proliferation and migration of OC cells via regulating miR-211. Our study suggests that LSZ might be a potential and effective treatment for OC.     

Fertilization effects on microbial community composition and aggregate formation in saline‐alkaline soil

Plant and Soil - Soil was sampled (0–20 cm) from a 5-year Yellow River Delta paddy field experiment: no fertilizers (Control), mineral fertilizers (NPK), and NPK plus organic...     

Screening and heterologous expression of flavone synthase and flavonol synthase to catalyze hesperetin to diosmetin

Biotechnology Letters - In this study, 44 flavone synthases (FNS) and flavonol synthases (FLS) from different origins were collected. The instability index and conserved domain of the enzymes were...