Purification of a 47-kDa calmodulin-binding polypeptide as an actin-binding protein from Neurospora crassa

We have enriched a 47-kDa polypeptide (p47) from Neurospora crassa on the basis of its affinity to calmodulin. The p47 was purified to homogeneity by chromatography on a Mono S cation exchange column and evidence is presented that the polypeptide co-sediments specifically with F-actin. The intracellular distribution of p47 and actin was also examined using indirect double immunofluorescence staining of cells at different stages of development. Our results suggest that by altering the conformation binding site of actin to p47, calmodulin could play a regulatory role in the polarized hyphal growth of N. crassa.     

An important late summer aggregation of fin whales Balaenoptera physalus,little auks Alle alle and Brünnich’s guillemots Uria lomvia in the eastern Greenland Sea and Fram Strait: influence of hydrographic structures

The distribution at sea of upper trophic levels—seabirds and marine mammals—is depending on their food availability: high concentrations reflect high prey abundance and thus high biological production. Polar marine ecosystems are characterized by low biodiversity and high biological patchiness. The distribution of predators, as a consequence, shows a similar patchiness. During two expeditions of icebreaking RV Polarstern in June–July 2011, biodiversity in the arctic marine zone north of 70°N was very low, with low numbers of species: 20 seabirds, eight cetaceans, five pinnipeds and polar bear. Moreover, a few species accounted for the majority in numbers: four bird species for 95 % of the total of 23,000 seabirds recorded during 700 transect counts: fulmar Fulmarus glacialis, kittiwake Rissa tridactyla, Brünnich’s guillemot Uria lomvia and little auk Alle alle. Among the marine mammals, 250 fin whales Balaenoptera physalus accounted for 80 % of the identified large cetaceans, 270 white-beaked dolphin Lagenorhynchus albirostris for 100 % of the small cetaceans and 180 harp seals Pagophilus groenlandica for 80 % of the identified pinnipeds. Their quantitative distribution was depending on water masses and oceanic fronts, large cetaceans—mainly fin whales—showing an important aggregation on the shelf slope off western Spitsbergen, as well as little auks and Brünnich’s guillemots. So that this zone, shelf slope and front of mixed Arctic/Atlantic Waters, showed unusually high seabird and cetacean concentrations. Seasonal factors possibly influencing their distribution are addressed.     

Comparison between three different LCIA methods for aquatic ecotoxicity and a product environmental risk assessment

Background and Objective  In the OMNIITOX project 11 partners have the common objective to improve environmental management tools for the assessment of (eco)toxicological impacts. The detergent case study aims at: i) comparing three Procter &c Gamble laundry detergent forms (Regular Powder-RP, Compact Powder-CP and Compact Liquid-CL) regarding their potential impacts on aquatic ecotoxicity, ii) providing insights into the differences between various Life Cycle Impact Assessment (LCIA) methods with respect to data needs and results and iii) comparing the results from Life Cycle Assessment (LCA) with results from an Environmental Risk Assessment (ERA). Material and Methods  The LCIA has been conducted with EDIP97 (chronic aquatic ecotoxicity) [1], USES-LCA (freshwater and marine water aquatic ecotoxicity, sometimes referred to as CML2001) [2, 3] and IMPACT 2002 (covering freshwater aquatic ecotoxicity) [4]. The comparative product ERA is based on the EU Ecolabel approach for detergents [5] and EUSES [6], which is based on the Technical Guidance Document (TGD) of the EU on Environmental Risk Assessment (ERA) of chemicals [7]. Apart from the Eco-label approach, all calculations are based on the same set of physico-chemical and toxicological effect data to enable a better comparison of the methodological differences. For the same reason, the system boundaries were kept the same in all cases, focusing on emissions into water at the disposal stage. Results and Discussion  Significant differences between the LCIA methods with respect to data needs and results were identified. Most LCIA methods for freshwater ecotoxicity and the ERA see the compact and regular powders as similar, followed by compact liquid. IMPACT 2002 (for freshwater) suggests the liquid is equally as good as the compact powder, while the regular powder comes out worse by a factor of 2. USES-LCA for marine water shows a very different picture seeing the compact liquid as the clear winner over the powders, with the regular powder the least favourable option. Even the LCIA methods which result in die same product ranking, e.g. EDIP97 chronic aquatic ecotoxicity and USES-LCA freshwater ecotoxicity, significantly differ in terms of most contributing substances. Whereas, according to IMPACT 2002 and USES-LCA marine water, results are entirely dominated by inorganic substances, the other LCIA methods and the ERA assign a key role to surfactants. Deviating results are mainly due to differences in the fate and exposure modelling and, to a lesser extent, to differences in the toxicological effect calculations. Only IMPACT 2002 calculates the effects based on a mean value approach, whereas all other LCIA methods and the ERA tend to prefer a PNEC-based approach. In a comparative context like LCA the OMNIITOX project has taken the decision for a combined mean and PNEC-based approach, as it better represents the ‘average’ toxicity while still taking into account more sensitive species. However, the main reason for deviating results remains in the calculation of the residence time of emissions in the water compartments. Conclusion and Outlook  The situation that different LCIA methods result in different answers to the question concerning which detergent type is to be preferred regarding the impact category aquatic ecotoxicity is not satisfactory, unless explicit reasons for the differences are identifiable. This can hamper practical decision support, as LCA practitioners usually will not be in a position to choose the ’right’ LCIA method for their specific case. This puts a challenge to the entire OMNIITOX project to develop a method, which finds common ground regarding fate, exposure and effect modelling to overcome the current situa-tion of diverging results and to reflect most realistic conditions.     

Establishment success of invasive ring‐necked and monk parakeets in Europe

Aim Invasive alien species are a growing threat to biodiversity, and identifying the mechanisms that enable these species to establish viable populations in their new environment is paramount for management of the problems they pose. Using an unusually large number of both failed and successful documented introductions of parakeets (Aves: Psittacidae) in Europe, we test two of the major hypotheses on the establishment success of invading species, namely the climate‐matching and the human‐activity hypothesis. Location European human population centres where ring‐necked parakeet (Psittacula krameri) and/or monk parakeet (Myiopsitta monachus) introductions have occurred. Methods Data on ring‐necked and monk parakeet introductions in Europe were gathered from various sources, including published books and articles, but also from unpublished reports and local grey literature. Information was verified with experts from the region under consideration. In order to test the climate‐matching hypothesis, we verified whether the climatic factors that determine the parakeets’ native ranges also explain establishment success in Europe. Parakeet occurrence data from the native ranges were analysed using the presence‐only modelling method Maxent , and correlations between parakeet establishment and climatic and anthropogenic variables in Europe were assessed using both stepwise logistic regression and the information‐theoretic model selection approach. Results The establishment success of ring‐necked and monk parakeets was found to be positively associated with human population density, and, both in the native and in the introduced regions, parakeet occurrence was negatively correlated with the number of frost days. Thus, parakeets are more likely to establish in warmer and human‐dominated areas. Main conclusions The large number of independent parakeet introductions in Europe allows us to test the often‐used climate‐matching and human‐activity hypotheses at the species level. We show that both hypotheses offer insight into the invasion process of monk and ring‐necked parakeets. Our results suggest that, in the future, parakeet establishment probability may increase even further because global warming is likely to cause a decrease in the number of frost days and because urbanization and human populations are still increasing.     

Improved auto-analyzer method for the determination of phosphonates (total phosphorus) in a broad range of media

Summary An improved auto-analyzer method for the quantitative determination of phosphonate-phosphorus was developed. Its advantages are of three sorts: 1) phosphonates can be determined in a variety of media, even with high levels of organic compounds, 2) viscous bacterial broths can be analysed directly on the auto-analyzer, 3) the method has an increased sensitivity.     

Development and evaluation of robust molecular markers linked to disease resistance in tomato for distinctness, uniformity and stability testing

Molecular markers linked to phenotypically important traits are of great interest especially when traits are difficult and/or costly to be observed. In tomato where a strong focus on resistance breeding has led to the introgression of several resistance genes, resistance traits have become important characteristics in distinctness, uniformity and stability (DUS) testing for Plant Breeders Rights (PBR) applications. Evaluation of disease traits in biological assays is not always straightforward because assays are often influenced by environmental factors, and difficulties in scoring exist. In this study, we describe the development and/or evaluation of molecular marker assays for the Verticillium genes Ve1 and Ve2, the tomato mosaic virus Tm1 (linked marker), the tomato mosaic virus Tm2 and Tm2 ² genes, the Meloidogyne incognita Mi1-2 gene, the Fusarium I (linked marker) and I2 loci, which are obligatory traits in PBR testing. The marker assays were evaluated for their robustness in a ring test and then evaluated in a set of varieties. Although in general, results between biological assays and marker assays gave highly correlated results, marker assays showed an advantage over biological tests in that the results were clearer, i.e., homozygote/heterozygote presence of the resistance gene can be detected and heterogeneity in seed lots can be identified readily. Within the UPOV framework for granting of PBR, the markers have the potential to fulfil the requirements needed for implementation in DUS testing of candidate varieties and could complement or may be an alternative to the pathogenesis tests that are carried out at present.     

Uncertainties in a carbon footprint model for detergents; quantifying the confidence in a comparative result

Background, aim, and scope  

A new trend driven by climate change concerns is the interest to label consumer products with a carbon footprint (CF) number. Here, we present a study that examines the uncertainty in the estimated CFs of a liquid and a compact powder detergent and how the uncertainty varies with the type of comparison one wishes to make.     

Community-Acquired Bacterial Meningitis in Alcoholic Patients

Background

Alcoholism is associated with susceptibility to infectious disease, particularly bacterial pneumonia. In the present study we described characteristics in alcoholic patients with bacterial meningitis and delineate the differences with findings in non-alcoholic adults with bacterial meningitis.

Methods/Principal Findings

This was a prospective nationwide observational cohort study including patients aged >16 years who had bacterial meningitis confirmed by culture of cerebrospinal fluid (696 episodes of bacterial meningitis occurring in 671 patients). Alcoholism was present in 27 of 686 recorded episodes of bacterial meningitis (4%) and alcoholics were more often male than non-alcoholics (82% vs 48%, P = 0.001). A higher proportion of alcoholics had underlying pneumonia (41% vs 11% P<0.001). Alcoholics were more likely to have meningitis due to infection with Streptococcus pneumoniae (70% vs 50%, P = 0.01) and Listeria monocytogenes (19% vs 4%, P = 0.005), whereas Neisseria meningitidis was more common in non-alcoholic patients (39% vs 4%, P = 0.01). A large proportion of alcoholics developed complications during clinical course (82% vs 62%, as compared with non-alcoholics; P = 0.04), often cardiorespiratory failure (52% vs 28%, as compared with non-alcoholics; P = 0.01). Alcoholic patients were at risk for unfavourable outcome (67% vs 33%, as compared with non-alcoholics; P<0.001).

Conclusions/Significance

Alcoholic patients are at high risk for complications resulting in high morbidity and mortality. They are especially at risk for cardiorespiratory failure due to underlying pneumonia, and therefore, aggressive supportive care may be crucial in the treatment of these patients.