Avian SDMs: current state,challenges, and opportunities

Quantifying species distributions using species distribution models (SDMs) has emerged as a central method in modern biogeography. These empirical models link species occurrence data with spatial environmental information. Since their emergence in the 1990s, thousands of scientific papers have used SDMs to study organisms across the entire tree of life, with birds commanding considerable attention. Here, we review the current state of avian SDMs and point to challenges and future opportunities for specific applications, ranging from conservation biology, invasive species and predicting seabird distributions, to more general topics such as modeling avian diversity, niche evolution and seasonal distributions at a biogeographic scale. While SDMs have been criticized for being phenomenological in nature, and for their inability to explicitly account for a variety of processes affecting populations, we conclude that they remain a powerful tool to learn about past, current, and future species distributions – at least when their limitations and assumptions are recognized and addressed. We close our review by providing an outlook on prospects and synergies with other disciplines in which avian SDMs can play an important role.     

Beyond protocols: improving the reliability of expert-based risk analysis underpinning invasive species policies

Risk assessment tools for listing invasive alien species need to incorporate all available evidence and expertise. Beyond the wealth of protocols developed to date, we argue that the current way of performing risk analysis has several shortcomings. In particular, lack of data on ecological impacts, transparency and repeatability of assessments as well as the incorporation of uncertainty should all be explicitly considered. We recommend improved quality control of risk assessments through formalized peer review with clear feedback between assessors and reviewers. Alternatively, a consensus building process can be applied to better capture opinions of different experts, thereby maximizing the evidential basis. Elaborating on manageability of invasive species is further needed to fully answer all risk analysis requirements. Tackling the issue of invasive species urges better handling of the acquired information on risk and the exploration of improved methods for decision making on biodiversity management. This is crucial for efficient conservation resource allocation and uptake by stakeholders and the public.     

Reproductive timing as a constraint on invasion success in the Ring-necked parakeet (<Emphasis Type="Italic">Psittacula krameri</Emphasis>)

Climate similarity favors biological invasion, but a match between seasonality in the novel range and the timing of life cycle events of the invader also influences the outcome of species introduction. Yet, phenology effects on invasion success have generally been neglected. Here we study whether a phenological mismatch limits the non-native range of a globally successful invader, the Ring-necked parakeet, in Europe. Given the latitudes at which parakeets have established across Europe, they breed earlier than expected based on breeding dates from the native Asian range. Moreover, comparing the breeding dates of European populations to those of parakeets in the native Asian range, to five native breeding bird species in Europe and to the start of the growing season of four native European trees shows that the discrepancy between expected and actual breeding phenology is greater in northern Europe. In northern European populations, this temporal mismatch appears to have negative effects on hatching success, and on population growth rates in years that are colder than average in the first six months. Phenological mismatch also can explain why parakeets from African populations (that are more likely to breed in autumn) have been poor invaders compared to parakeets from Asia. These lines of evidence support the hypothesis that the reproductive phenology of the Ring-necked parakeet can be a limiting factor for establishment and range expansion in colder climates. Our results provide growing support for the hypothesis that the match between climate seasonality and timing of reproduction (or other important life cycle events) can affect the establishment success, invasive potential and distribution range of introduced non-native species, beyond the mere effect of climate similarity.     

Comparison between three different LCIA methods for aquatic ecotoxicity and a product environmental risk assessment

Background and Objective  In the OMNIITOX project 11 partners have the common objective to improve environmental management tools for the assessment of (eco)toxicological impacts. The detergent case study aims at: i) comparing three Procter &c Gamble laundry detergent forms (Regular Powder-RP, Compact Powder-CP and Compact Liquid-CL) regarding their potential impacts on aquatic ecotoxicity, ii) providing insights into the differences between various Life Cycle Impact Assessment (LCIA) methods with respect to data needs and results and iii) comparing the results from Life Cycle Assessment (LCA) with results from an Environmental Risk Assessment (ERA). Material and Methods  The LCIA has been conducted with EDIP97 (chronic aquatic ecotoxicity) [1], USES-LCA (freshwater and marine water aquatic ecotoxicity, sometimes referred to as CML2001) [2, 3] and IMPACT 2002 (covering freshwater aquatic ecotoxicity) [4]. The comparative product ERA is based on the EU Ecolabel approach for detergents [5] and EUSES [6], which is based on the Technical Guidance Document (TGD) of the EU on Environmental Risk Assessment (ERA) of chemicals [7]. Apart from the Eco-label approach, all calculations are based on the same set of physico-chemical and toxicological effect data to enable a better comparison of the methodological differences. For the same reason, the system boundaries were kept the same in all cases, focusing on emissions into water at the disposal stage. Results and Discussion  Significant differences between the LCIA methods with respect to data needs and results were identified. Most LCIA methods for freshwater ecotoxicity and the ERA see the compact and regular powders as similar, followed by compact liquid. IMPACT 2002 (for freshwater) suggests the liquid is equally as good as the compact powder, while the regular powder comes out worse by a factor of 2. USES-LCA for marine water shows a very different picture seeing the compact liquid as the clear winner over the powders, with the regular powder the least favourable option. Even the LCIA methods which result in die same product ranking, e.g. EDIP97 chronic aquatic ecotoxicity and USES-LCA freshwater ecotoxicity, significantly differ in terms of most contributing substances. Whereas, according to IMPACT 2002 and USES-LCA marine water, results are entirely dominated by inorganic substances, the other LCIA methods and the ERA assign a key role to surfactants. Deviating results are mainly due to differences in the fate and exposure modelling and, to a lesser extent, to differences in the toxicological effect calculations. Only IMPACT 2002 calculates the effects based on a mean value approach, whereas all other LCIA methods and the ERA tend to prefer a PNEC-based approach. In a comparative context like LCA the OMNIITOX project has taken the decision for a combined mean and PNEC-based approach, as it better represents the ‘average’ toxicity while still taking into account more sensitive species. However, the main reason for deviating results remains in the calculation of the residence time of emissions in the water compartments. Conclusion and Outlook  The situation that different LCIA methods result in different answers to the question concerning which detergent type is to be preferred regarding the impact category aquatic ecotoxicity is not satisfactory, unless explicit reasons for the differences are identifiable. This can hamper practical decision support, as LCA practitioners usually will not be in a position to choose the ’right’ LCIA method for their specific case. This puts a challenge to the entire OMNIITOX project to develop a method, which finds common ground regarding fate, exposure and effect modelling to overcome the current situa-tion of diverging results and to reflect most realistic conditions.     

Exploring root symbiotic programs in the model legume Medicago truncatula using EST analysis

We report on a large-scale expressed sequence tag (EST) sequencing and analysis program aimed at characterizing the sets of genes expressed in roots of the model legume Medicago truncatula during interactions with either of two microsymbionts, the nitrogen-fixing bacterium Sinorhizobium meliloti or the arbuscular mycorrhizal fungus Glomus intraradices. We have designed specific tools for in silico analysis of EST data, in relation to chimeric cDNA detection, EST clustering, encoded protein prediction, and detection of differential expression. Our 21 473 5′- and 3′-ESTs could be grouped into 6359 EST clusters, corresponding to distinct virtual genes, along with 52 498 other M.truncatula ESTs available in the dbEST (NCBI) database that were recruited in the process. These clusters were manually annotated, using a specifically developed annotation interface. Analysis of EST cluster distribution in various M.truncatula cDNA libraries, supported by a refined R test to evaluate statistical significance and by ‘electronic northern’ representation, enabled us to identify a large number of novel genes predicted to be up- or down-regulated during either symbiotic root interaction. These in silico analyses provide a first global view of the genetic programs for root symbioses in M.truncatula. A searchable database has been built and can be accessed through a public interface.     

PISA. The effect of paracetamol (acetaminophen) and ibuprofen on body temperature in acute stroke: Protocol for a phase II double-blind randomised placebo-controlled trial [ISRCTN98608690]

Background

During the first days after stroke, one to two fifths of the patients develop fever or subfebrile temperatures. Body temperature is a strong prognostic factor after stroke. Pharmacological reduction of temperature in patients with acute ischaemic stroke may improve their functional outcome. Previously, we studied the effect of high dose (6 g daily) and low dose (3 g daily) paracetamol (acetaminophen) in a randomised placebo-controlled trial of 75 patients with acute ischemic stroke. In the high-dose paracetamol group, mean body temperature at 12 and 24 hours after start of treatment was 0.4°C lower than in the placebo group. The effect of ibuprofen, another potent antipyretic drug, on body-core temperature in normothermic patients has not been studied.

Aim

The aim of the present trial is to study the effects of high-dose paracetamol and ibuprofen on body temperature in patients with acute ischaemic stroke, and to study the safety of these treatments.

Design

Seventy-five (3 × 25) patients with acute ischaemic stroke confined to the anterior circulation will be randomised to treatment with either: 400 mg ibuprofen, 1000 mg acetaminophen, or with placebo 6 times daily during 5 days. Body-temperatures will be measured with a rectal electronic thermometer at the start of treatment and after 24 hours. An infrared tympanic thermometer will be used to monitor body temperature at 2-hour intervals during the first 24 hours and at 12-hour intervals thereafter. The primary outcome measure will be rectal temperature at 24 hours after the start of treatment. The study results will be analysed on an intent-to-treat basis, but an on-treatment analysis will also be performed. No formal interim analysis will be carried out.     

A Hypertrophic Cardiomyopathy-associated MYBPC3 Mutation Common in Populations of South Asian Descent Causes Contractile Dysfunction

Hypertrophic cardiomyopathy (HCM) results from mutations in genes encoding sarcomeric proteins, most often MYBPC3, which encodes cardiac myosin binding protein-C (cMyBP-C). A recently discovered HCM-associated 25-base pair deletion in MYBPC3 is inherited in millions worldwide. Although this mutation causes changes in the C10 domain of cMyBP-C (cMyBP-C^C10mut), which binds to the light meromyosin (LMM) region of the myosin heavy chain, the underlying molecular mechanism causing HCM is unknown. In this study, adenoviral expression of cMyBP-C^C10mut in cultured adult rat cardiomyocytes was used to investigate protein localization and evaluate contractile function and Ca²⁺ transients, compared with wild-type cMyBP-C expression (cMyBP-C^WT) and controls. Forty-eight hours after infection, 44% of cMyBP-C^WT and 36% of cMyBP-C^C10mut protein levels were determined in total lysates, confirming equal expression. Immunofluorescence experiments showed little or no localization of cMyBP-C^C10mut to the C-zone, whereas cMyBP-C^WT mostly showed C-zone staining, suggesting that cMyBP-C^C10mut could not properly integrate in the C-zone of the sarcomere. Subcellular fractionation confirmed that most cMyBP-C^C10mut resided in the soluble fraction, with reduced presence in the myofilament fraction. Also, cMyBP-C^C10mut displayed significantly reduced fractional shortening, sarcomere shortening, and relaxation velocities, apparently caused by defects in sarcomere function, because Ca²⁺ transients were unaffected. Co-sedimentation and protein cross-linking assays confirmed that C10^mut causes the loss of C10 domain interaction with myosin LMM. Protein homology modeling studies showed significant structural perturbation in cMyBP-C^C10mut, providing a potential structural basis for the alteration in its mode of interaction with myosin LMM. Therefore, expression of cMyBP-C^C10mut protein is sufficient to cause contractile dysfunction in vitro.     

LCA Study and Environmental Benefits for Low Temperature Disinfection Process in Commercial Laundry (12 pp)

Background, Aims and Scope

This study aims to compare the energy requirements and potential environmental impacts associated with three different commercial laundry processes for washing microbiologically contaminated hospital and care home laundry. Thermal disinfection relies mainly on a 90°C washing temperature and hydrogen peroxide, while the chemothermal disinfection uses a combination of chemicals (mainly peracetic acid) and 70°C washing temperature. The chemical disinfection process relies on a combination of chemicals used at 40°C. Currently, chemothermal processes are the most commonly used in professional laundries. Traditional chemical processes are uncommon due to drawbacks of longer residence time and high chemical requirements. However, the innovative Sterisan chemical process based on phthalimidoperoxyhexanoic acid (PAP) – which is the key subject of this Life Cycle Assessment – was designed to overcome these technical limitations.

Methods

This study is based on a screening Life Cycle Assessment (LCA) prepared in 2002 by Öko-Institut (Germany), which was carried out following the requirements of the ISO 14040 series standards. It includes energy resource consumption, water resource consumption, climate change, eutrophication and acidification potential as relevant environmental indicators. In 2004/2005, the study was further updated and broadened to include the aquatic eco-toxicity potential, photochemical oxidant formation and ozone depletion potential in order to represent the environmental burdens associated with the chemicals used.Based on available data, the system boundaries include detergent manufacturing, the professional wash process, waste water treatment, but excluding the laundry finishing process. The selected functional unit was 1kg washed hygiene laundry.

Results and Discussion

The LCA indicates that the Sterisan chemical process has a lower potential environmental impact than thermal or chemothermal treatment for six out of seven key indicators. This includes a 55% lower energy and a 46% lower water consumption. The global warming potential and acidification potential are approximately halved, while the photochemical oxidant formation potential and eutrophication potential are almost reduced to one third. By contrast, for the aquatic eco-toxicity, the thermal- and chemothermal processes have an approximately 17 fold lower impact. The worse aquatic toxicity score for the Sterisan process is mainly caused by a solvent component in the formulation.

Conclusion

The comparison of the thermal, chemothermal and Sterisan commercial laundry processes shows that the Sterisan process allows for very substantial reductions in energy and water consumption, as well as significant reductions in climate change, photochemical oxidant formation potential, air acidification potential and eutrophication potential. Yet, Sterisan has a clear disadvantage with regards to aquatic eco-toxicity potential.

Recommendation and Perspective

Based on a current hygiene laundry volume of approx. 584000 tons of linen washed per year by commercial laundries in Germany, a full substitution of the market to the Sterisan process could potentially allow a primary energy saving of ~750000 GJ/year (roughly equivalent to the residential primary energy consumption of 23500 German citizens or the overall energy demand of approx. 6000 German citizens). In terms of improvements to the respective processes, the chemothermal and thermal process could benefit from a reduction of water volume, and change of detergent composition to reduce the eutrophication potential. As the washing temperature is an essential factor, only slight improvements for the energy consumption indicator can be obtained, e.g. by choosing green electricity and reducing the amount of water to be heated. The Sterisan process could be improved by lowering the solvent use, although for perspective, the current aquatic eco-toxicity score of the Sterisan process is still lower than that of a typical domestic laundry product.

     

Purification of a 47-kDa calmodulin-binding polypeptide as an actin-binding protein from Neurospora crassa

We have enriched a 47-kDa polypeptide (p47) from Neurospora crassa on the basis of its affinity to calmodulin. The p47 was purified to homogeneity by chromatography on a Mono S cation exchange column and evidence is presented that the polypeptide co-sediments specifically with F-actin. The intracellular distribution of p47 and actin was also examined using indirect double immunofluorescence staining of cells at different stages of development. Our results suggest that by altering the conformation binding site of actin to p47, calmodulin could play a regulatory role in the polarized hyphal growth of N. crassa.