An important late summer aggregation of fin whales Balaenoptera physalus,little auks Alle alle and Brünnich’s guillemots Uria lomvia in the eastern Greenland Sea and Fram Strait: influence of hydrographic structures

The distribution at sea of upper trophic levels—seabirds and marine mammals—is depending on their food availability: high concentrations reflect high prey abundance and thus high biological production. Polar marine ecosystems are characterized by low biodiversity and high biological patchiness. The distribution of predators, as a consequence, shows a similar patchiness. During two expeditions of icebreaking RV Polarstern in June–July 2011, biodiversity in the arctic marine zone north of 70°N was very low, with low numbers of species: 20 seabirds, eight cetaceans, five pinnipeds and polar bear. Moreover, a few species accounted for the majority in numbers: four bird species for 95 % of the total of 23,000 seabirds recorded during 700 transect counts: fulmar Fulmarus glacialis, kittiwake Rissa tridactyla, Brünnich’s guillemot Uria lomvia and little auk Alle alle. Among the marine mammals, 250 fin whales Balaenoptera physalus accounted for 80 % of the identified large cetaceans, 270 white-beaked dolphin Lagenorhynchus albirostris for 100 % of the small cetaceans and 180 harp seals Pagophilus groenlandica for 80 % of the identified pinnipeds. Their quantitative distribution was depending on water masses and oceanic fronts, large cetaceans—mainly fin whales—showing an important aggregation on the shelf slope off western Spitsbergen, as well as little auks and Brünnich’s guillemots. So that this zone, shelf slope and front of mixed Arctic/Atlantic Waters, showed unusually high seabird and cetacean concentrations. Seasonal factors possibly influencing their distribution are addressed.     

RevSex duplication-induced and sex-related differences in the SOX9 regulatory region chromatin landscape in human fibroblasts

It was recently shown that duplications of the RevSex element, located 0.5 Mb upstream of SOX9, cause XX-disorder of sex development (DSD), and that deletions cause XY-DSD. To explore how a 148 kb RevSex duplication could have turned on gonadal SOX9 expression in the absence of SRY in an XX-male, we examined the chromatin landscape in primary skin fibroblast cultures from the index, his RevSex duplication-carrier father and six controls. The ENCODE project supports the notion that chromatin state maps show overlap between different cell types, i.e., that our study of fibroblasts could be of biological relevance. We examined the SOX9 regulatory region by high-resolution ChIP-on-chip experiments (a kind of “chromatin-CGH”) and DNA methylation investigations. The RevSex duplication was associated with chromatin changes predicting better accessibility of the SRY-responsive TESCO enhancer region 14–15 kb upstream of SOX9. Four kb downstream of the TESCO evolutionary conserved region, a peak of the enhancer/promoter-associated H3K4me3 mark was found together with a major dip of the repressive H3K9me3 chromatin mark. Similar differences were also found when three control males were compared with three control females. A marked male/female difference was a more open chromatin signature in males starting ~400 kb upstream of SOX9 and increasing toward the SOX9 promoter. In the RevSex duplication-carrier father, two positions of DNA hypomethylation were also found, one corresponding to the H3K4me3 peak mentioned above. Our results suggest that the RevSex duplication could operate by inducing long-range epigenetic changes. Furthermore, the differences in chromatin state maps between males and females suggest that the Y chromosome or X chromosome dosage may affect chromatin conformation, i.e., that sex-dependent gene regulation may take place by chromatin modification.     

Invasive ring-necked parakeets Psittacula krameri in Belgium: habitat selection and impact on native birds

There is a large and growing number of alien species in ecosystems all over the world. In view of this, management efforts should concentrate on invasives that have detrimental effects on native biota. However, action against invasives is often hindered by a lack of relevant ecological information such as the expected distribution and impact of the invader. Our aims were to identify the habitat characteristics that influence ring-necked parakeet abundance in Belgium and to assess the effects of competition for nesting cavities with native hole-nesters. We determined the abundance of parakeets and native hole-nesters in 44 study sites using point counts. We examined the relationship between parakeet numbers and a set of habitat and landscape variables and to assess the effect of competition, we studied the relationships between the number of parakeets and the number of native hole-nesters. We found that parakeet abundance differs between vegetation types based on dominant tree species, and that abundance is higher in forests or parks surrounded by built-up areas. Parakeet numbers were also strongly associated with cavity density, suggesting that this may be a limiting factor. Of the two native hole-nesters considered to be the most vulnerable to competition (nuthatch and starling), we found a negative association with parakeet numbers for the nuthatch only. No relations were found with starlings or any of the other hole-nesting species examined. These findings should be considered in the debate concerning the possible need of action against this species.     

Influence of Patch Factors and Connectivity on the Avifauna of Fragmented Polylepis Forest in the Ecuadorian Andes

Human‐induced alteration of habitat is a major threat to biodiversity worldwide, especially in areas of high biological diversity and endemism. Polylepis (Rosaceae) forest, a unique forest habitat in the high Andes of South America, presently occurs as small and isolated patches in grassland dominated landscapes. We examine how the avian community is likely influenced by patch characteristics (i.e., area, plant species composition) and connectivity in a landscape composed of patches of Polylepis forest surrounded by páramo grasslands in Cajas National Park in the Andes of southern Ecuador. We used generalized linear mixed models and an information‐theoretic approach to identify the most important variables probably influencing birds inhabiting 26 forest patches. Our results indicated that species richness was associated with area of a patch and floristic composition, particularly the presence of Gynoxys (Asteraceae). However, connectivity of patches probably influenced the abundance of forest and generalists species. Elsewhere, it has been proposed that effective management plans for birds using Polylepis should promote the conservation of mature Polylepis patches. Our results not only suggest this but also show that there are additional factors, such as the presence of Gynoxys plants, which will probably play a role in conservation of birds. More generally, these findings show that while easily measured attributes of the patch and landscape may provide some insights into what influences patch use by birds, knowledge of other factors, such as plant species composition, is essential for better understanding the distribution of birds in fragmented landscapes.     

Arbuscular mycorrhizal symbiosis elicits proteome responses opposite of P-starvation in SO4 grapevine rootstock upon root colonisation with two Glomus species

Although plant biotisation with arbuscular mycorrhizal fungi (AMF) is a promising strategy for improving plant health, a better knowledge regarding the molecular mechanisms involved is required. In this context, we sought to analyse the root proteome of grapevine rootstock Selection Oppenheim 4 (SO4) upon colonisation with two AMF. As expected, AMF colonisation stimulates plant biomass. At the proteome level, changes in protein amounts due to AMF colonisation resulted in 39 differentially accumulated two-dimensional electrophoresis spots in AMF roots relative to control. Out of them, 25 were co-identified in SO4 roots upon colonisation by Glomus irregulare and Glomus mosseae supporting the existence of conserved plant responses to AM symbiosis in a woody perennial species. Among the 18 proteins whose amount was reduced in AMF-colonised roots were proteins involved in glycolysis, protein synthesis and fate, defence and cell rescue, ethylene biosynthesis and purine and pyrimidine salvage degradation. The six co-identified proteins whose amount was increased had functions in energy production, signalling, protein synthesis and fate including proteases. Altogether these data confirmed that a part of the accommodation program of AMF previously characterized in annual plants is maintained within roots of the SO4 rootstock cuttings. Nonetheless, particular responses also occurred involving proteins of carbon metabolism, development and root architecture, defence and cell rescue, anthocyanin biosynthesis and P remobilization, previously reported as induced upon P-starvation. This suggests the occurrence of P reprioritization upon AMF colonization in a woody perennial plant species with agronomical interest.     

A Sensitive and Specific Quantitation Method for Determination of Serum Cardiac Myosin Binding Protein-C by Electrochemiluminescence Immunoassay

Biomarkers are becoming increasingly more important in clinical decision-making, as well as basic science. Diagnosing myocardial infarction (MI) is largely driven by detecting cardiac-specific proteins in patients'' serum or plasma as an indicator of myocardial injury. Having recently shown that cardiac myosin binding protein-C (cMyBP-C) is detectable in the serum after MI, we have proposed it as a potential biomarker for MI. Biomarkers are typically detected by traditional sandwich enzyme-linked immunosorbent assays. However, this technique requires a large sample volume, has a small dynamic range, and can measure only one protein at a time.Here we show a multiplex immunoassay in which three cardiac proteins can be measured simultaneously with high sensitivity. Measuring cMyBP-C in uniplex or together with creatine kinase MB and cardiac troponin I showed comparable sensitivity. This technique uses the Meso Scale Discovery (MSD) method of multiplexing in a 96-well plate combined with electrochemiluminescence for detection. While only small sample volumes are required, high sensitivity and a large dynamic range are achieved. Using this technique, we measured cMyBP-C, creatine kinase MB, and cardiac troponin I levels in serum samples from 16 subjects with MI and compared the results with 16 control subjects. We were able to detect all three markers in these samples and found all three biomarkers to be increased after MI. This technique is, therefore, suitable for the sensitive detection of cardiac biomarkers in serum samples.     

Can anti-cyclic citrullinated peptide antibody-negative RA be subdivided into clinical subphenotypes?

Introduction  

Studies investigating genetic risk factors for susceptibility to rheumatoid arthritis (RA) studied anti-citrullinated peptide antibody (CCP)-positive RA more frequently than anti-CCP-negative RA. One of the reasons for this is the perception that anti-CCP-negative RA may include patients that fulfilled criteria for RA but belong to a wide range of diagnoses. We aimed to evaluate the validity of this notion and explored whether clinical subphenotypes can be discerned within anti-CCP-negative RA.     

Responses to high-fat challenges varying in fat type in subjects with different metabolic risk phenotypes: a randomized trial

Background

The ability of subjects to respond to nutritional challenges can reflect the flexibility of their biological system. Nutritional challenge tests could be used as an indicator of health status but more knowledge on metabolic and immune responses of different subjects to nutritional challenges is needed. The aim of this study was to compare the responses to high-fat challenges varying in fat type in subjects with different metabolic risk phenotypes.

Methodology/Principal Findings

In a cross-over design 42 men (age 50–70 y) consumed three high-fat shakes containing saturated fat (SFA), monounsaturated fat (MUFA) or n-3 polyunsaturated (PUFA). Men were selected on BMI and health status (lean, obese or obese diabetic) and phenotyped with MRI for adipose tissue distribution. Before and 2 and 4 h after shake consumption blood was drawn for measurement of expression of metabolic and inflammation-related genes in peripheral blood mononuclear cells (PBMCs), plasma triglycerides (TAG), glucose, insulin, cytokines and ex vivo PBMC immune response capacity. The MUFA and n-3 PUFA challenge, compared to the SFA challenge, induced higher changes in expression of inflammation genes MCP1 and IL1β in PBMCs. Obese and obese diabetic subjects had different PBMC gene expression and metabolic responses to high-fat challenges compared to lean subjects. The MUFA challenge induced the most pronounced TAG response, mainly in obese and obese diabetic subjects.

Conclusion/Significance

The PBMC gene expression response and metabolic response to high-fat challenges were affected by fat type and metabolic risk phenotype. Based on our results we suggest using a MUFA challenge to reveal differences in response capacity of subjects.

Trial Registration

ClinicalTrials.gov {"type":"clinical-trial","attrs":{"text":"NCT00977262","term_id":"NCT00977262"}}NCT00977262     

The mechanisms of interference competition: two experiments on foraging waders

Models of population dynamics that include interference competitionhave often been applied to foraging waders and less so to otherforagers, even though these models are, in principle, generallyapplicable. At present, however, it is still unclear whetherinterference competition is of importance for foraging waders.To support this idea experimental evidence and knowledge ofthe mechanisms underlying interference effects are required.We experimentally determined the relationship between foragerdensity and foraging success in two wader species: the red knot(Calidris canutus) and the ruddy turnstone (Arenaria interpres).With each of the two species, we conducted an experiment consistingof 300 one-min trials. In these trials we scored the behaviorand the foraging success of focal individuals at specific combinationsof bird and prey density. Irrespective of prey density, individualsof both species discovered fewer prey items at higher bird densities.Despite this, only in turnstones did intake rates decline withincreasing bird density. Knots compensated for a lower prey-discoveryrate by rejecting fewer prey items at higher bird densities.In knots, bird density had a complex, nonmonotonic effect onthe time spent vigilant and searching. In turnstones the maineffect of increased bird density was a reduction in the prey-encounterrate, that is, the reward per unit search time. Effects on thetime spent vigilant and the time spent searching were less pronouncedthan in knots. Thus, the mechanistic basis of the effects ofbird density was complex for each of the two species and differedbetween them.