Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

Correlation between rainfall in the dry season and the occurrence of the white rice borer (Scirpophaga innotata Wlk.) in Java

The amount of rain which falls sporadically in the relatively dry season at the time that the white rice borer is diapausing as a full grown larva in the rice stubble, has a very important influence on the size of population of the borers in the following wet season when rice is grown. If this dry season is wet or very wet (according to our standard, based on the figures of rainfall and borer damage over 26 years in five regions of Eastern Java), no damage can be expected in the following planting season. If the dry season is really dry or very dry, outbreaks of borers may occur (in the period under survey this occurred in nine out of fourteen years). We have tried to give an outline of a method of prediction of borer damage in the planting season, based on the rainfall dates of the foregoing dry season.

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Zusammenfassung Der Weisse Reisbohrer (Scirpophaga innotata Wlk.) kommt nur in Gebieten vor, wo jährlich eine ausgeprägte Regen- und Trockenzeit (Monsun) auftritt. Am Ende der Regenzeit gehen die vollerwachsenen Raupen, die im Stengel der reifenden Reispflanze leben, in Diapause. Während der folgenden relativ trockenen Jahreszeit, wenn nur gelegentlich Regenschauer fallen, ruhen die Raupen in der Stoppel. Bald nachdem die ersten heftigen Regenfälle der neuen Regenzeit einsetzen, verpuppen sich die Larven und alle Falter schlüpfen gemeinsam zum Stoppelflug.Dieser Zünsler ist in gewissen Gebieten Javas einer der Hauptschädlinge des Reises, obwohl sein Auftreten sehr unregelmäßig ist. Jahrelang war man allgemein der Auffassung, daß relativ reichlicher Regenfall während der Trockenzeit die Reisbohrerpopulation erheblich vermindere und daß in diesem Falle keine schweren Schäden durch Reisbohrerbefall erwartet werden können.Während eines Zeitraums von 26 Jahren (1915–1940) wurden in fünf Gebieten Ost-Javas sowolhl der Niederschlag wie der Bohrerschaden untersucht und Berechnungen der jährlichen Niederschlagsmenge in der Trockenzeit und des Bohrerschadens verglichen. Dies erhärtete die alte Auffassung, daß nach einer relativ feuchten oder sehr feuchten Trockenzeit kein Bohrerbefall von Bedeutung während des Beobachtungszeitraumes auftritt. Dagegen folgten in neun von 14 Jahren mit einer trockenen oder sehr trockenen Trockenzeit schwere oder ziemlich schwere Ausbrüche der Weißen Reisstengelbohrer während der folgenden feuchten Jahreszeiten. Obwohl auch andere Faktoren von einiger Bedeutung sein dürften, wird geschlossen, daß die Niederschlagsmenge während der Trockenzeit einen sehr entscheidenden Einfluß auf die Möglichkeit des Auftrétens einer Reisbohrer Kalamität im darauffolgenden Jahre hat. Diesen Daten entsprechend wird auf der Grundlage der Niederschlagszahlen in der vorangegangenen Trockenzeit ein Prognose-Schema entwickelt, wann Bohrerschaden zu erwarten ist.

     

Effects of temperature,salinity and agitation on byssus thread formation of zebra musselDreissena polymorpha

Byssus thread production ofD. polymorpha under different conditions of temperature, salinity and agitation were studied in the laboratory. The acclimation to salinity and temperature greatly affects the byssus production ofD. polymorpha. Byssus production of mussels was significantly reduced when temperature increased beyond 20°C and decreased below 10°C. Mussels with cut threads (for counting), produced a substantially increased number of threads. However, mussels with uncut byssus threads were comparatively more mobile. Byssus production of mussels did not vary significantly at salinities up to 3. Beyond this salinity byssus production was reduced significantly. Mussels increased their byssus production with increasing frequency of agitation.     

Probing the structure and mobility of Pseudomonas aeruginosa azurin by circular dichroism and dynamic fluorescence anisotropy.

The UV dynamic fluorescence and CD of several Pseudomonas aeruginosa azurins bearing single amino acid mutation have been studied. Two classes of mutants were examined. In the first class, two hydrophobic residues in the core of the protein, Ile 7 and Phe 110, nearest to the azurin single tryptophan Trp 48, were substituted by a serine (mutants 17S and F110S). In the second class, two residues in the outer sphere of the copper ligand field were changed, obtaining the following mutants: M44K, H35F, H35L, and H35Q. All these proteins showed two fluorescence lifetimes in the copper-containing form, but only one in the copper-free form. The lifetime of the latter derivatives was different from either those of the metal-bound samples, definitely ruling out the presence of apo-like species in the holo protein. Copper-free 17S and F110S showed a more complex fluorescence decay profile requiring a distribution of lifetimes rather than a single lifetime. Holo F110S was also better fitted, in the limit of confidence, with two distributions rather than a pair of lifetimes. Time-resolved anisotropy of these two mutants as well as of wild-type (wt) protein showed two components (rotational times for wt < or = 200 ps and 7 ns, respectively). These components were not affected significantly by copper removal in the case of wt protein. Instead, the short rotational component of the mutants dropped dramatically to values near zero, indicating a much greater mobility of the tryptophanyl residue in the mutant apo azurins. These data were supported by CD measurements showing a small effect of the copper presence in the region below 250 nm, i.e., in the secondary structure, but almost a collapse of the aromatic asymmetry at 270-295 nm related to a relaxation of the structural constraint around the tryptophan. Altogether these data show that copper does not play a structural role in wt azurin, whereas it is crucial in the stabilization of 17S and F110S mutants. Furthermore, although the metal site geometry is rigidly kept in wt apo-azurin, it regains the native form only in the presence of the metal in the "core" mutants. This finding is important for the theory of entatic states in metalloproteins (Williams RJP, 1995, Eur J Biochem 234:363-381).     

细叶马先蒿根系发育形态学研究

细叶马先蒿为玄参科多年生草本植物。年生产周期明显缩短。根系营养生长至花期为粗壮主根与纤细侧根并存,果期侧根几乎全部枯萎脱落,所存留根系皆呈乳白色。由胚根形成的初生主根根毛密集,初生木质部二原型。侧生分生组织只有形成层而无木栓形成层。根表皮细胞经解离后略呈不规则方形片状,横切面为平周长梭形,进行垂周分裂增加梭形根表皮细胞长度,以适应根的增粗生长。根表皮脱落时,外皮层以同样生长方式代替脱落的表皮。在年     

丝氨酸蛋白酶抑制剂的研究及应用

丝氨酸蛋白酶抑制剂（serpin）是一类结构、序列同源的蛋白酶抑制剂,它是体内许多蛋白水解级联反应的调节因子,其遗传性结构或分泌异常将导致许多疾病．因此对于其结构及作用机理的研究将为临床应用提供依据．     

固定化酵母细胞生产1,6-二磷酸果糖研究

本文研究了固定化酵母细胞制备果糖1,6二磷酸(FDP)的方法及其生产。用卡拉胶包埋方法固定化酿酒酵母(Sacchromyces cerevisae),对含葡萄糖1.0M,磷酸盐0.8M的糖磷液,pH6.5,在37℃下进行磷酸化反应。反复分批转化20天以上,可达到平均产FDPH_427.58mg/ml,最高为59.94mg/ml。用100ml固定化细胞生物反应器连续运转309h,稀释速率D=0.097h~(-1),平均产FDPH_4 21.51mg/ml。20L反应器连续运转,生产能力达到1.7g/h.L。用层析方法制备FDPNa_3结晶粉,提取收率为72.08％,制备质量达到或超过了国内外同类产品的质量要求。     

Investigation of Local Ethylene Emission from Intact Cherry Tomatoes by Means of Photothermal Deflection and Photoacoustic Detection

The function of the coronet region of the cherry tomato (Lycopersicon esculentum Cherry) as the main emission channel for ethylene was investigated. Ethylene was measured employing two laser-based detection systems, the photothermal deflection instrument and the photoacoustic detection setup. It is possible to detect minimum ethylene concentrations of 1 nL L-1 locally and rapidly with the first instrument and concentrations of 6 pL L-1 in a continuous flow system with the second setup. The continuous flow system makes it possible to change the air composition and to monitor its influence on the ethylene production of the tomato. The response times of the two instruments are 30 s and 4 min, respectively. The local character of the measurements makes it possible to determine the emission sites of the gaseous plant hormone ethylene and their relative importance. Transient anoxic conditions stop production of ethylene; return to aerobic conditions shows the evolution of the accumulated ethylene precursor 1-aminocyclopropane-1-carboxylic acid and its renewed production on the measured ethylene emission, with a time resolution of several minutes. Temporarily sealing the main emission channel yields results comparable to anoxia.     

l-Fucose residues on cellulose-based dialysis membranes: Quantification of membrane-associatedl-fucose and analysis of specific lectin binding

Contact of mononuclear human leukocytes with cellulose dialysis membranes may result in complement-independent cell activation, i.e. enhanced synthesis of cytokines, prostaglandins and an increase in 2-microglobulin synthesis. Cellular contact activation is specifically inhibited by the monosaccharidel-fucose suggesting that dialysis membrane associatedl-fucose residues are involved in leukocyte activation. In this study we have detected and quantitatedl-fucose on commercially-available cellulose dialysis membranes using two approaches. A sensitive enzymatic fluorescence assay detectedl-fucose after acid hydrolysis of flat sheet membranes. Values ranged from 79.3±3.6 to 90.2±5.0 pmol cm^–2 for Hemophan® or Cuprophan® respectively. Enzymatic cleavage of terminal -l-fucopyranoses with -l-fucosidase yielded 7.7±3.3 pmoll-fucose per cm² for Cuprophan. Enzymatic hydrolysis of the synthetic polymer membranes AN-69 and PC-PE did not yield detectable amounts ofl-fucose. In a second approach, binding of the fucose specific lectins ofLotus tetragonolobus andUlex europaeus (UEAI) demonstrated the presence of biologically accessiblel-fucose on the surface of cellulose membranes. Specific binding was observed with Cuprophan®, and up to 2.6±0.3 pmoll-fucose per cm² was calculated to be present from Langmuir-type adsorption isotherms. The data presented are in line with the hypothesis that surface-associatedl-fucose residues on cellulose dialysis membranes participate in leukocyte contact activation.     

Effect of mutations in Shigella flexneri chromosomal and plasmid-encoded lipopolysaccharide genes on invasion and serum resistance

This study shows that both length and distribution of lipopolysaccharide (LPS) are important for Shigella flexneri invasion and virulence. Mutants were generated in the chromosomal LPS synthesis genes rfa , rfb , and rol , and in a plasmid-encoded O-antigen chain-length regulator, cld _pHS-2. LPS analysis showed that mutations in rfb genes and in a candidate rfaL gene either eliminated the entire O-antigen side chains or produced chains of greatly reduced length. Mutation in a previously unidentified gene, rfaX , affected the LPS core region and resulted in reduced amounts of O-antigen. Mutants defective in cld _pHS-2 or rol had different distributions of O-antigen chain lengths. The results of tissue-culture cell invasion and plaque assays, the Serény test, and serum-sensitivity assay suggested roles for the different LPS synthesis genes in bacterial survival and virulence; rfaL, rfaX and rfb loci are required for serum resistance and intercellular spread, but not for invasion; cld _pHS-2 is required for resistance to serum killing and for full inflammation in the Serény test, but not for invasion or intercellular spread, while rol is required for normal invasiveness and plaque formation, but not for serum resistance. Thus, O-antigen synthesis and chain-length regulation genes encoded on both the chromosome and the small plasmid pHS-2 play important roles in S. flexneri invasion and virulence.