Utilization of dry distiller’s grain and solubles as nutrient supplement in the simultaneous saccharification and ethanol fermentation at high solids loading of corn stover

Dry distiller’s grain and solubles (DDGS) is a major by-product of corn-based ethanol production and is usually used as animal feed. Here, it was added to the simultaneous saccharification and ethanol fermentation (SSF) carried out at high solids loading of steam explosion pretreated corn stover using a mutant strain Saccharomyces cerevisiae DQ1. The performance of SSF process with DDGS was comparable to those using the expensive yeast extract supplementation. With 30% (w/w) solids plus the addition of cellulase and 1 g DDGS l⁻¹, the final ethanol reached 55 g l⁻¹ (7% v/v). The results indicated that the expensive supplement of yeast extract could be replaced by DDGS.     

南亚热带常绿阔叶林树木多样性与生物量和生产力的关联及其影响因素

生物多样性和生态系统功能的关系直接或间接地影响着生产力, 是生态学研究的关键问题。本研究旨在定量探讨亚热带自然林演替后期森林生态系统树木多样性与生物量或生产力的关系。本研究基于中国南亚热带长期永久性样地的群落调查数据以及地形和土壤养分数据, 分析了南亚热带常绿阔叶林树木多样性与生物量和生产力的关联及其影响因素。相关性分析结果表明, 物种多样性与生物量呈显著负相关, 与生产力呈显著正相关; 结构多样性与生物量呈显著正相关, 与生产力呈显著负相关。此外, 不同环境因子对多样性、生物量和生产力的影响具有显著差异, 其中土壤含水量对生产力有显著影响, 物种多样性指标与部分地形和土壤因子均有相关性, 而群落结构多样性指标与土壤因子的相关性更强。方差分解结果表明, 结构多样性对生物量和生产力的单独效应的解释率最大, 分别为35.39%和5.21%; 其次是结构多样性和物种多样性的共同效应, 对生物量和生产力的解释率分别为13.66%和3.53%; 地形和土壤因子的解释率较小。同时, 结构方程结果也表明, 结构多样性对生物量有较强的直接正影响; 生物量对生产力有强烈的直接负影响, 结构多样性通过增加生物量明显地减少了生产力; 土壤和地形因子主要是通过物种和结构多样性间接影响生物量和生产力。综上, 本研究认为在南亚热带森林演替顶极群落中, 群落结构复杂性和物种多样性的提高对促进群落生产力和生物量具有重要作用。     

miR-155-5p alleviates ethanol-induced myocardial insulin resistance in H9C2 cells via regulating the mTOR signalling pathway

Molecular Biology Reports - Alcohol exposure impairs myocardium insulin sensitivity, which links to heart dysfunction. miR-155 regulates mTOR signaling pathway and is involved in multiple...     

Time‐specific and pleiotropic quantitative trait loci coordinately modulate stem growth in Populus

In perennial woody plants, the coordinated increase of stem height and diameter during juvenile growth improves competitiveness (i.e. access to light); however, the factors underlying variation in stem growth remain unknown in trees. Here, we used linkage‐linkage disequilibrium (linkage‐LD) mapping to decipher the genetic architecture underlying three growth traits during juvenile stem growth. We used two Populus populations: a linkage mapping population comprising a full‐sib family of 1,200 progeny and an association mapping panel comprising 435 unrelated individuals from nearly the entire natural range of Populus tomentosa. We mapped 311 quantitative trait loci (QTL) for three growth traits at 12 timepoints to 42 regions in 17 linkage groups. Of these, 28 regions encompassing 233 QTL were annotated as 27 segmental homology regions (SHRs). Using SNPs identified by whole‐genome re‐sequencing of the 435‐member association mapping panel, we identified significant SNPs (P ≤ 9.4 × 10^?7) within 27 SHRs that affect stem growth at nine timepoints with diverse additive and dominance patterns, and these SNPs exhibited complex allelic epistasis over the juvenile growth period. Nineteen genes linked to potential causative alleles that have time‐specific or pleiotropic effects, and mostly overlapped with significant signatures of selection within SHRs between climatic regions represented by the association mapping panel. Five genes with potential time‐specific effects showed species‐specific temporal expression profiles during the juvenile stages of stem growth in five representative Populus species. Our observations revealed the importance of considering temporal genetic basis of complex traits, which will facilitate the molecular design of tree ideotypes.     

MOABS: model based analysis of bisulfite sequencing data

Bisulfite sequencing (BS-seq) is the gold standard for studying genome-wide DNA methylation. We developed MOABS to increase the speed, accuracy, statistical power and biological relevance of BS-seq data analysis. MOABS detects differential methylation with 10-fold coverage at single-CpG resolution based on a Beta-Binomial hierarchical model and is capable of processing two billion reads in 24 CPU hours. Here, using simulated and real BS-seq data, we demonstrate that MOABS outperforms other leading algorithms, such as Fisher’s exact test and BSmooth. Furthermore, MOABS analysis can be easily extended to differential 5hmC analysis using RRBS and oxBS-seq. MOABS is available at http://code.google.com/p/moabs/.     

土壤增温和秸秆还田对土壤养分和胞外酶活性的影响

气候变暖和秸秆还田是影响农田生态系统碳氮循环和土壤养分周转的重要因子,然而两者的交互作用尚缺乏系统研究。通过大田模拟试验,设置土壤正常温度+秸秆不还田、土壤正常温度+秸秆还田、土壤增温+秸秆不还田和土壤增温+秸秆还田四个处理,探讨土壤增温与秸秆还田对土壤养分循环及胞外酶活性的影响。结果显示,土壤增温使硝态氮含量、土壤可溶性有机碳含量和氧化酶活性分别增加了40.4%,25.8%和6.0%,但也使土壤水分、铵态氮含量与土壤微生物量碳分别损失了10.6%,33.4%和29.9%。秸秆还田则使土壤含水量、全氮、铵态氮、有效磷与可溶性有机碳的含量分别增加了7.5%,7.2%,44.1%,32.3%和18.4%,同时也使土壤碳氮磷循环酶的活性分别增加了46.2%,22.9%和20.6%。因此研究表明,土壤增温提高了氧化酶的活性,加速了土壤碳的转化,也使土壤氮矿化与硝化反应速率提高。秸秆还田通过增加外源有机物质,丰富了土壤的碳、氮源,使土壤养分含量提高,一定程度上弥补了增温带来的养分损失。     

Co-Transplantation of GDNF-Overexpressing Neural Stem Cells and Fetal Dopaminergic Neurons Mitigates Motor Symptoms in a Rat Model of Parkinson’s Disease

Striatal transplantation of dopaminergic (DA) neurons or neural stem cells (NSCs) has been reported to improve the symptoms of Parkinson’s disease (PD), but the low rate of cell survival, differentiation, and integration in the host brain limits the therapeutic efficacy. We investigated the therapeutic effects of intracranial co-transplantation of mesencephalic NSCs stably overexpressing human glial-derived neurotrophic factor (GDNF-mNSCs) together with fetal DA neurons in the 6-OHDA rat model of PD. Striatal injection of mNSCs labeled by the contrast enhancer superparamagnetic iron oxide (SPIO) resulted in a hypointense signal in the striatum on T2-weighted magnetic resonance images that lasted for at least 8 weeks post-injection, confirming the long-term survival of injected stem cells in vivo. Co-transplantation of GDNF-mNSCs with fetal DA neurons significantly reduced apomorphine-induced rotation, a behavioral endophenotype of PD, compared to sham-treated controls, rats injected with mNSCs expressing empty vector (control mNSCs) plus fetal DA neurons, or rats injected separately with either control mNSCs, GDNF-mNSCs, or fetal DA neurons. In addition, survival and differentiation of mNSCs into DA neurons was significantly greater following co-transplantation of GDNF-mNSCs plus fetal DA neurons compared to the other treatment groups as indicated by the greater number of cell expressing both the mNSCs lineage tracer enhanced green fluorescent protein (eGFP) and the DA neuron marker tyrosine hydroxylase. The success of cell-based therapies for PD may be greatly improved by co-transplantation of fetal DA neurons with mNSCs genetically modified to overexpress trophic factors such as GDNF that support differentiation into DA cells and their survival in vivo.     

The low fertility of Chinese white poplar: dynamic changes in anatomical structure, endogenous hormone concentrations, and key gene expression in the reproduction of a naturally occurring hybrid

Key message

We report that low fertility during intraspecific hybridization in Chinese white poplar was caused by prefertilization barriers, reduced ovules, and embryonic abortion. Hormone concentrations and gene expression patterns were also evaluated during the fertilization process.

Abstract

Hybrid vigor holds tremendous potential for yield increases and trait improvement; however, some hybridization combinations within Populus show very low fertility. To explore the causes of this low fertility in intraspecific hybridization of Chinese white poplar, we examined anatomical structure, hormone levels and expression of key genes in two unique crossing combinations of Populus × tomentosa “Pt02” × P. × tomentosa “LM50”, and (P. × tomentosa × P. alba cv. bolleana “Ptb”) × P. × tomentosa “LM50”. The seed set potential in the intraspecific hybridization P. × tomentosa “Pt02” × P. × tomentosa “LM50” was quite low, which was likely caused by prefertilization barriers, reduced ovule numbers, and embryonic abortion in ovaries. During intraspecific hybridization, we found reduced indoleacetic acid (IAA) in pistils, which may cause pollen tube deformations and increased IAA in heart-stage embryos, which may affect embryo development. Gibberellin A3 (GA3) decreased from the zygote dormancy stage to globular-stage embryos, which may be caused by failure of fertilization in specific embryos. The maximum zeatin (Z) concentration was found in heart-stage embryos, but Z concentrations quickly decreased, which may affect endosperm development. Increasing concentrations of abscisic acid (ABA) during zygote dormancy and eight-cell proembryo stages likely induced abscission of the infructescence. High ABA concentrations also regulated embryo maturity. Measurement of genes expression showed that high expression of SRK and/or SLG may result in rejection of pollen by stigmatic papillae through a mechanism, reminiscent of self-incompatibility. Also, low expression of LEC1 and FUS3 may cause embryonic abortion. Identification and eventual bypassing of these barriers may allow future genetic improvement of this key woody crop species.