Down-regulation of PERK enhances resistance to ionizing radiation

Although, ionizing radiation (IR) has been implicated to cause stress in endoplasmic reticulum (ER), how ER stress signaling and major ER stress sensors modulate cellular response to IR is unclear. Protein kinase RNA-like endoplasmic reticulum kinase (PERK) is an ER transmembrane protein which initiates unfolded protein response (UPR) or ER stress signaling when ER homeostasis is disturbed. Here, we report that down-regulation of PERK resulted in increased clonogenic survival, enhanced DNA repair and reduced apoptosis in irradiated cancer cells. Our study demonstrated that PERK has a role in sensitizing cancer cells to IR.     

Effect of long photoperiod on the reproductive and bulbing processes in garlic (Allium sativum L.) genotypes

Garlic (Allium sativum L.) genotypes differ considerably in scape length, flowering ability, and seed production. In bolting clones reproductive processes are facilitated by a combination of specific temperature and photoperiod regimes. However, it is yet unclear whether the phase-specific photoperiod effect on florogenesis is universal for all garlic genotypes. We investigated the effect of ambient day length interruption by 10 or 30 days of long photoperiod in ten garlic accessions belonging to four bio-morphological groups. It was evident that garlic genotypes vary significantly in response to long photoperiod, and that in some clones the treatment enhances florogenesis, flower stalk elongation and bulbing. The competition for resources by the simultaneously developing bulb and inflorescence sinks differentially determines the fate of stalk elongation and flower development in the investigated genotypes. It is concluded that florogenesis in garlic can be promoted by exposure to proper environmental stimuli, during pre-planting storage and sprouting to the later growth stages. The genetic variability acquired from sexual reproduction and vegetatively preserved collections can serve in genetic and physiological studies as well as in breeding programs.     

Biodiversity and biogeography pattern of benthic communities in the coastal basins of India

Our understanding of coastal biogeography patterns is presently limited to certain regions and marine groups. Comprehending large-scale patterns and their underlying predictors is critical due to the changing environmental conditions. The Indian coast, bounded by two contrasting seas, the Bay of Bengal and Arabian Sea, offers an excellent opportunity to determine the most important factors influencing coastal biogeography patterns. Here we use distribution data of 2581 species belonging to three benthic groups (polychaetes, gastropods and bivalves) to evaluate the role of environmental factors and coastal currents on the biogeography patterns. Data were obtained from the bioSearch database, developed by CSIR-NIO, Goa under the Census of Marine Life programme. As measures of diversity, we used species richness as well as taxonomic distinctiveness indices. Multivariate analyses were used in identifying biodiversity patterns and correlated biogeography patterns with environmental factors. This paper points out a clear difference between the eastern and western basins of India, but also within the basins. Mainland and island fauna also showed a clear distinction. The biogeography of the Indian coast is best explained by temperature, habitat heterogeneity and coastline length. Spatiotemporal variability in the boundary currents also forms an effective barrier for the dispersal of planktonic larvae of benthic fauna. This study has identified a finer scale division of the Indian coast that can help to effectively improve conservation plans. Our study is the first to attempt to understand the benthic biogeography patterns of the Indian coast. The findings will be useful in guiding future biogeography studies of this unique and underexplored marine system.     

Genome-wide mining of potentially-hypervariable microsatellites and validation of markers in Momordica charantia L.

Genetica - Relatively large number of bitter melon microsatellite markers have been reported; however, only few resulted in successful PCR amplification and a small fraction shown polymorphisms....     

Length-weight relationship of six coastal fish species from Gulf of Mannar,South-east coast of India

The parameters ‘a’ and ‘b’ of length weight relationship of 6 species (Scolopsis vosmeri (Bloch, 1792), Engyprosopon macrolepis (Regan, 1908), Bleekeria murtii Joshi, Zacharia&Kanthan, 2012), Centriscus scutatus Linnaeus, 1758, Samaris cristatus Gray, 1831 and Iniistius bimaculatus Ruppell, 1829) are reported from the Gulf of Mannar, South east coast of India. The fish samples were collected from experimental trawling conducted twice a month during the period August to December 2012 and September to December 2013 at a depth ranging from 8.5 to 20.5 m. Three hauls were made in a day with each haul of one hour duration. The total length of the gear was 32 m with a cod end mesh size of 30 mm. The total length of the fish was measured to the nearest 0.1 cm and weight to the nearest 0.1 g.