Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells

The embryonic stem cell-specific cell cycle-regulating (ESCC) family of microRNAs (miRNAs) enhances reprogramming of mouse embryonic fibroblasts to induced pluripotent stem cells. Here we show that the human ESCC miRNA orthologs hsa-miR-302b and hsa-miR-372 promote human somatic cell reprogramming. Furthermore, these miRNAs repress multiple target genes, with downregulation of individual targets only partially recapitulating the total miRNA effects. These targets regulate various cellular processes, including cell cycle, epithelial-mesenchymal transition (EMT), epigenetic regulation and vesicular transport. ESCC miRNAs have a known role in regulating the unique embryonic stem cell cycle. We show that they also increase the kinetics of mesenchymal-epithelial transition during reprogramming and block TGFβ-induced EMT of human epithelial cells. These results demonstrate that the ESCC miRNAs promote dedifferentiation by acting on multiple downstream pathways. We propose that individual miRNAs generally act through numerous pathways that synergize to regulate and enforce cell fate decisions.     

From microRNAs to targets: pathway discovery in cell fate transitions

MicroRNAs (miRNAs) are 22 nt non-coding RNAs that regulate expression of downstream targets by messenger RNA (mRNA) destabilization and translational inhibition. A large number of eukaryotic mRNAs are targeted by miRNAs, with many individual mRNAs being targeted by multiple miRNAs. Further, a single miRNA can target hundreds of mRNAs, making these small RNAs powerful regulators of cell fate decisions. Such regulation by miRNAs has been observed in the maintenance of the embryonic stem cell (ESC) cell cycle and during ESC differentiation. MiRNAs can also promote the dedifferentiation of somatic cells to induced pluripotent stem cells. During this process they target multiple downstream genes, which represent important nodes of key cellular processes. Here, we review these findings and discuss how miRNAs may be used as tools to discover novel pathways that are involved in cell fate transitions using dedifferentiation of somatic cells to induced pluripotent stem cells as a case study.     

Lifelong reduction in complex IV induces tissue‐specific metabolic effects but does not reduce lifespan or healthspan in mice

Loss of SURF1, a Complex IV assembly protein, was reported to increase lifespan in mice despite dramatically lower cytochrome oxidase (COX) activity. Consistent with this, our previous studies found advantageous changes in metabolism (reduced adiposity, increased insulin sensitivity, and mitochondrial biogenesis) in Surf1^?/? mice. The lack of deleterious phenotypes in Surf1^?/? mice is contrary to the hypothesis that mitochondrial dysfunction contributes to aging. We found only a modest (nonsignificant) extension of lifespan (7% median, 16% maximum) and no change in healthspan indices in Surf1^?/? vs. Surf1^+/+ mice despite substantial decreases in COX activity (22%–87% across tissues). Dietary restriction (DR) increased median lifespan in both Surf1^+/+ and Surf1^?/? mice (36% and 19%, respectively). We measured gene expression, metabolites, and targeted expression of key metabolic proteins in adipose tissue, liver, and brain in Surf1^+/+ and Surf1^?/? mice. Gene expression was differentially regulated in a tissue‐specific manner. Many proteins and metabolites are downregulated in Surf1^?/? adipose tissue and reversed by DR, while in brain, most metabolites that changed were elevated in Surf1^?/? mice. Finally, mitochondrial unfolded protein response (UPR^mt)‐associated proteins were not uniformly altered by age or genotype, suggesting the UPR^mt is not a key player in aging or in response to reduced COX activity. While the changes in gene expression and metabolism may represent compensatory responses to mitochondrial stress, the important outcome of this study is that lifespan and healthspan are not compromised in Surf1^?/? mice, suggesting that not all mitochondrial deficiencies are a critical determinant of lifespan.     

Adverse effects on macrophage lipid transport and survival by high density lipoprotein from patients with coronary heart disease

High density lipoprotein (HDL)–macrophage interactions have the potential to modulate macrophage function in a beneficial way to prevent the development of lipid‐loaded foam cell formation in atherosclerosis. Although HDL is atheroprotective, it can become dysfunctional in chronic inflammatory conditions and increase cardiovascular risk. Here, we examined the effect of dysfunctional‐HDL from patients with coronary artery disease, on macrophage function in comparison to functional‐HDL from controls. Exposure of macrophages to dysfunctional‐HDL for 24 h resulted significant increase in cellular oxidative stress, cholesterol, and cytotoxicity. It also stimulated mitochondrial membrane depolarization, DNA damage, apoptosis, and cleavage of poly (ADP‐ribose) polymerase, which are characteristics of proapoptotic pathways. In contrast, functional‐HDL treatment maintained cholesterol homeostasis, essential membrane potential, DNA integrity, and cell survival. These results demonstrate that HDL from coronary artery disease (CAD) patient promotes proatherogenic effects that in turn trigger macrophage apoptosis, an important feature in atherogenesis and thereby providing new insight in our understanding of the atherogenic mechanisms.     

Loss of mitochondrial protease ClpP protects mice from diet‐induced obesity and insulin resistance

Caseinolytic peptidase P (ClpP) is a mammalian quality control protease that is proposed to play an important role in the initiation of the mitochondrial unfolded protein response (UPR^mt), a retrograde signaling response that helps to maintain mitochondrial protein homeostasis. Mitochondrial dysfunction is associated with the development of metabolic disorders, and to understand the effect of a defective UPR^mt on metabolism, ClpP knockout (ClpP^?/?) mice were analyzed. ClpP^?/? mice fed ad libitum have reduced adiposity and paradoxically improved insulin sensitivity. Absence of ClpP increased whole‐body energy expenditure and markers of mitochondrial biogenesis are selectively up‐regulated in the white adipose tissue (WAT) of ClpP^?/? mice. When challenged with a metabolic stress such as high‐fat diet, despite similar caloric intake, ClpP^?/? mice are protected from diet‐induced obesity, glucose intolerance, insulin resistance, and hepatic steatosis. Our results show that absence of ClpP triggers compensatory responses in mice and suggest that ClpP might be dispensable for mammalian UPR^mt initiation. Thus, we made an unexpected finding that deficiency of ClpP in mice is metabolically beneficial.     

Primary attraction and kairomonal host discrimination in three species of Dendroctonus (Coleoptera: Scolytidae)

Abstract 1 Synthetic blends of bole and foliage volatiles of four sympatric species of conifers were released from pheromone‐baited multiple‐funnel traps to determine if three species of tree‐killing bark beetles (Coleoptera: Scolytidae): (i) exhibited primary attraction to volatiles of their hosts and (ii) discriminated among volatiles of four sympatric species of host and nonhost conifers. 2 Bole and foliage volatiles from Douglas‐fir, Pseudotsuga menziesii (Mirb.) Franco, increased the attraction of coastal and interior Douglas‐fir beetles, Dendroctonus pseudotsugae Hopkins, to pheromone‐baited traps. Primary attraction to bole volatiles was observed in interior D. pseudotsugae. Beetles were significantly less attracted to the pheromone bait when it was combined with volatiles of lodgepole pine, Pinus contorta var. latifolia Engelm. or interior fir, Abies lasiocarpa × bifolia. 3 The monoterpene myrcene synergized attraction of mountain pine beetles, Dendroctonus ponderosae Hopkins, to their aggregation pheromones, but there was no evidence of primary attraction to host volatiles or discrimination among volatiles from the four conifers. 4 There was significant primary attraction of the spruce beetle, Dendroctonus rufipennis Kirby, to bole and foliage volatiles of interior spruce, Picea engelmannii × glauca, but beetles did not discriminate among volatiles of four sympatric conifers when they were combined with pheromone baits. 5 Our results indicate that host volatiles act as kairomones to aid pioneer Douglas‐fir beetles and spruce beetles in host location by primary attraction, and that their role as synergists to aggregation pheromones is significant. For the mountain pine beetle, we conclude that random landing and close range acceptance or rejection of potential hosts would occur in the absence of aggregation pheromones emanating from a tree under attack.     

Length–weight relationship of six deep‐sea fish species from the shelf regions of western Bay of Bengal and Andaman waters

Length–weight relationships for six deep‐sea fish species inhabiting the shelf regions of the western Bay of Bengal and the waters of Andaman and Nicobar of India are presented. Samples were collected using high‐speed demersal trawl and expo demersal trawl nets at depths of 231–514 m in August and September 2010. The b values in the analyses ranged from 3.05 to 3.31, showing a mean and median value of 3.21 (SE ± 0.039, SD ± 0.097) and 3.2, respectively. Comparisons of b values with earlier estimations confirm the presence of spatial and temporal variations in the length–weight relations among the species. Coefficient of determination scores ranged from 0.94 to 0.97, indicating robustness of the samples analysed. This study provides the first estimates of length–weight relationships for four of the deep‐sea fishes, enriching the understanding of the growth patterns and population dynamics of these less‐studied deep‐sea fishery resources in Indian Ocean waters.     

Postmeiotic development of pollen surface layers requires two Arabidopsis ABCG-type transporters

Key message

Two Arabidopsis ABC transporters, ABCG1 and ABCG16, are expressed in the tapetal layer, specifically after postmeiotic microspore release, and play important roles in pollen surface development.

Abstract

The male gametophytic cells of terrestrial plants, the pollen grains, travel far before fertilization, and thus require strong protective layers, which take the form of a pollen coat and a pollen wall. The protective surface structures are generated by the tapetum, the tissue surrounding the developing gametophytes. Many ABC transporters, including Arabidopsis thaliana ABCG1 and ABCG16, have been shown to play essential roles in the development of such protective layers. However, the details of the mechanism of their function remain to be clarified. In this study, we show that ABCG1 and ABCG16 are localized at the plasma membrane of tapetal cells, specifically after postmeiotic microspore release, and play critical roles in the postmeiotic stages of male gametophyte development. Consistent with this stage-specific expression, the abcg1 abcg16 double knockout mutant exhibited defects in pollen development after postmeiotic microspore release; their microspores lacked intact nexine and intine layers, exhibited defects in pollen mitosis I, displayed ectopic deposits of arabinogalactan proteins, failed to complete cytokinesis, and lacked sperm cells. Interestingly, the double mutant exhibited abnormalities in the internal structures of tapetal cells, too; the storage organelles of tapetal cells, tapetosomes and elaioplasts, were morphologically altered. Thus, this work reveals that the lack of ABCG1 and ABCG16 at the tapetal cell membrane causes a broad range of defects in pollen, as well as in tapetal cells themselves. Furthermore, these results suggest that normal pollen surface development is necessary for normal development of the pollen cytoplasm.