Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection

Hepatitis C virus (HCV) and human pegivirus (HPgV), formerly GBV-C, are the only known human viruses in the Hepacivirus and Pegivirus genera, respectively, of the family Flaviviridae. We present the discovery of a second pegivirus, provisionally designated human pegivirus 2 (HPgV-2), by next-generation sequencing of plasma from an HCV-infected patient with multiple bloodborne exposures who died from sepsis of unknown etiology. HPgV-2 is highly divergent, situated on a deep phylogenetic branch in a clade that includes rodent and bat pegiviruses, with which it shares <32% amino acid identity. Molecular and serological tools were developed and validated for high-throughput screening of plasma samples, and a panel of 3 independent serological markers strongly correlated antibody responses with viral RNA positivity (99.9% negative predictive value). Discovery of 11 additional RNA-positive samples from a total of 2440 screened (0.45%) revealed 93–94% nucleotide identity between HPgV-2 strains. All 12 HPgV-2 RNA-positive cases were identified in individuals also testing positive for HCV RNA (12 of 983; 1.22%), including 2 samples co-infected with HIV, but HPgV-2 RNA was not detected in non-HCV-infected individuals (p<0.0001), including those singly infected by HIV (p = 0.0075) or HBV (p = 0.0077), nor in volunteer blood donors (p = 0.0082). Nine of the 12 (75%) HPgV-2 RNA positive samples were reactive for antibodies to viral serologic markers, whereas only 28 of 2,429 (1.15%) HPgV-2 RNA negative samples were seropositive. Longitudinal sampling in two individuals revealed that active HPgV-2 infection can persist in blood for at least 7 weeks, despite the presence of virus-specific antibodies. One individual harboring both HPgV-2 and HCV RNA was found to be seronegative for both viruses, suggesting a high likelihood of simultaneous acquisition of HCV and HPgV-2 infection from an acute co-transmission event. Taken together, our results indicate that HPgV-2 is a novel bloodborne infectious virus of humans and likely transmitted via the parenteral route.     

Plasmacytoid dendritic cells and C1q differentially regulate inflammatory gene induction by lupus immune complexes

Immune complexes (ICs) play a pivotal role in causing inflammation in systemic lupus erythematosus (SLE). Yet, it remains unclear what the dominant blood cell type(s) and inflammation-related gene programs stimulated by lupus ICs are. To address these questions, we exposed normal human PBMCs or CD14(+) isolated monocytes to SLE ICs in the presence or absence of C1q and performed microarray analysis and other tests for cell activation. By microarray analysis, we identified genes and pathways regulated by SLE ICs that are both type I IFN dependent and independent. We also found that C1q-containing ICs markedly reduced expression of the majority of IFN-response genes and also influenced the expression of multiple other genes induced by SLE ICs. Surprisingly, IC activation of isolated CD14(+) monocytes did not upregulate CD40 and CD86 and only modestly stimulated inflammatory gene expression. However, when monocyte subsets were purified and analyzed separately, the low-abundance CD14(dim) ("patrolling") subpopulation was more responsive to ICs. These observations demonstrate the importance of plasmacytoid dendritic cells, CD14(dim) monocytes, and C1q as key regulators of inflammatory properties of ICs and identify many pathways through which they act.     

H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation

The functional and structural chromatin roles of H2A.Z are still controversial. This work represents a further attempt to resolve the current functional and structural dichotomy by characterizing chromatin structures containing native H2A.Z. We have analyzed the role of this variant in mediating the stability of the histone octamer in solution using gel-filtration chromatography at different pH. It was found that decreasing the pH from neutral to acidic conditions destabilized the histone complex. Furthermore, it was shown that the H2A.Z-H2B dimer had a reduced stability. Sedimentation velocity analysis of nucleosome core particles (NCPs) reconstituted from native H2A.Z-containing octamers indicated that these particles exhibit a very similar behavior to that of native NCPs consisting of canonical H2A. Sucrose gradient fractionation of native NCPs under different ionic strengths indicated that H2A.Z had a subtle tendency to fractionate with more stabilized populations. An extensive analysis of the salt-dependent dissociation of histones from hydroxyapatite-adsorbed chromatin revealed that, whereas H2A.Z co-elutes with H3-H4, hyperacetylation of histones (by treatment of chicken MSB cells with sodium butyrate) resulted in a significant fraction of this variant eluting with the canonical H2A. These studies also showed that the late elution of this variant (correlated to enhanced binding stability) was independent of the chromatin size and of the presence or absence of linker histones.     

Structure of a capsular polysaccharide isolated from Salmonella enteritidis

Salmonella enteritidis is a food-borne enteric human pathogen that can form a complex protective extracellular matrix. We describe here a component of this matrix which is distinct from other known salmonella extracellular polysaccharides such as cellulose and colanic acid. We have used glycosyl composition and linkage analysis, as well as 1D and 2D NMR spectroscopy to determine the structure of this polysaccharide. We propose that the primary saccharide in the S. enteritidis capsule has a branched tetrasaccharide repeating unit having the following structure: -->3)-alpha-D-Galp-(1-->2)-[alpha-Tyvp-(1-->3)]-alpha-D-Manp-(1-->4)-alpha-L-Rhap-(1-->. This structure is partially substituted on both tyvelose and galactose with a glucose-containing side chain. It further bears considerable similarity to the O antigen from this organism, a feature found in a number of other capsules from Gram-negative bacteria. In addition, we have detected fatty acids at levels that indicate the presence of a lipid anchor.     

Advances toward new antidepressants beyond SSRIs: 1-aryloxy-3-piperidinylpropan-2-ols with dual 5-HT1A receptor antagonism/SSRI activities. Part 5

A series of 1-aryloxy-3-piperidinylpropan-2-ols possessing potent dual 5-HT1A receptor antagonism and serotonin reuptake inhibition was discovered. 1-(1H-Indol-4-yloxy)-3-(4-benzo[b]thiophen-2-ylpiperidinyl)propan-2-ols exhibited selective and high affinities at the 5-HT1A receptor and serotonin reuptake site in vitro. In vivo evaluation of this series of compounds demonstrated elevated extracellular serotonin levels from the basal and quick recovery of neuron firing that was presumably suppressed by the initial acute activation of 5-HT1A somatodendritic autoreceptors.     

Aminopyridine carboxamides as c-Jun N-terminal kinase inhibitors: targeting the gatekeeper residue and beyond

The structure-activity relationships of 5,6-positions of aminopyridine carboxamide-based c-Jun N-terminal Kinase (JNK) inhibitors were explored to expand interaction with the kinase specificity and ribose-binding pockets. The syntheses of analogues and the impact of structural modification on in vitro potency and cellular activity are described.     

Constitutive Endocytosis of the Chemokine CX3CL1 Prevents Its Degradation by Cell Surface Metalloproteases

CX₃CL1, a chemokine with transmembrane and soluble species, plays a key role in inflammation by acting as both chemoattractant and adhesion molecule. CX₃CL1 is the only chemokine known to undergo constitutive internalization, raising the possibility that dynamic equilibrium between the endocytic compartment and the plasma membrane critically regulates the availability and processing of CX₃CL1 at the cell surface. We therefore investigated how transmembrane CX₃CL1 is internalized. Inhibition of dynamin using a nonfunctional allele or of clathrin using specific small interfering RNA prevented endocytosis of the chemokine in CX₃CL1-expressing human ECV-304 cells. Perusal of the cytoplasmic domain of CX₃CL1 revealed two putative adaptor protein-2 (AP-2)-binding motifs. Accordingly, CX₃CL1 co-localized with AP-2 at the plasma membrane. We generated a mutant allele of CX₃CL1 lacking the cytoplasmic tail. Deletion of the cytosolic tail precluded internalization of the chemokine. We used site-directed mutagenesis to disrupt AP-2-binding motifs, singly or in combination, which resulted in diminished internalization of CX₃CL1. Although CX₃CL1 was present in both superficial and endomembrane compartments, ADAM10 (a disintegrin and metalloprotease 10) and tumor necrosis factor-converting enzyme, the two metalloproteases that cleave CX₃CL1, localized predominantly to the plasmalemma. Inhibition of endocytosis using the dynamin inhibitor, Dynasore, promoted rapid metalloprotease-dependent shedding of CX₃CL1 from the cell surface into the surrounding medium. These findings indicate that the cytoplasmic tail of CX₃CL1 facilitates its constitutive clathrin-mediated endocytosis. Such regulation enables intracellular storage of a sizable pool of presynthesized CX₃CL1 that protects the chemokine from degradation by metalloproteases at the plasma membrane.Inflammation is marked by the migration of circulating leukocytes into sites of injury, a process that occurs via a series of coordinated interactions between leukocytes and endothelial or epithelial cells. Central to this process are chemokines, a family of low molecular weight proteins that can attract leukocytes bearing the complementary receptors. When engagement of the chemokine receptor occurs, the leukocyte becomes activated and is induced to firmly adhere to the inflamed endothelium. These initial steps culminate in diapedesis of the leukocyte across the endothelium and migration into the injured tissue. The local complement of chemokines elaborated is organ-specific and varies with the type of inflammation present. In addition, specific leukocyte subsets also bear distinct chemokine receptors. In this way, chemokines and chemokine receptors confer organ specificity to leukocyte migration and help to “fine-tune” the nature of the observed inflammatory response.Among the 40 chemokines identified so far, CX₃CL1 is one of only two that have a transmembrane structure (1, 2). The chemokine domain of CX₃CL1 binds to its complementary receptor, CX₃CR1, through two distinct amino acid residues (3). The mucin stalk of CX₃CL1 allows efficient presentation of the chemokine to circulating leukocytes that express CX₃CR1, thereby allowing these leukocytes to be captured by the underlying endothelium (4, 5). CX₃CL1 also possesses a cytoplasmic tail 37 amino acids in length. However, the specific functions of the cytoplasmic tail have been left completely unexplored.Accumulating evidence demonstrates a critical role for CX₃CL1 in the pathogenesis of diverse inflammatory diseases, including atherosclerosis, systemic lupus erythematosus, and rejection of transplanted organs (6–15). Cell surface expression of CX₃CL1 is known to be regulated by proteolytic cleavage, or shedding, from the plasma membrane (16–18). Constitutive cleavage of CX₃CL1 occurs at low levels and is mediated by ADAM10 (a disintegrin and metalloprotease 10) (17). In response to inflammatory stimulation with lipopolysaccharide or to protein kinase C activation using phorbol 12-myristate 13-acetate, proteolytic cleavage of CX₃CL1 is markedly enhanced. Inducible cleavage of CX₃CL1 is mediated by tumor necrosis factor-α converting enzyme (TACE; ADAM17),² a related protease of the metzincin family (16, 18).In addition to proteolytic cleavage, surface expression of CX₃CL1 is also regulated by subcellular trafficking. We recently demonstrated that cell surface CX₃CL1 rapidly recycles to and from a specialized endocytic compartment, raising the possibility that the intracellular pool serves as a storage depot and that dynamic equilibrium between the endocytic compartment and the plasma membrane determines the availability and processing of transmembrane CX₃CL1 (19). In the current study, we explored whether the unique cytoplasmic tail of CX₃CL1 is important for this novel mode of regulation of the chemokine and whether it affects susceptibility of the chemokine to surface proteases. Our data suggest that plasmalemmal CX₃CL1 undergoes constitutive clathrin-mediated endocytosis (CME), facilitating storage of an intracellular pool of chemokine that is protected from cell surface metalloproteases.