NMR and modeling studies of a synthetic extracellular loop II of the kappa opioid receptor in a DPC micelle.

This paper provides the first direct experimental evidence for the secondary structural features of the putative second extracellular loop (ECL II) of the kappa opioid receptor through a synthetic peptide mimic in a DPC micelle environment. These studies indicate that residues V(6)-A(15) of the ECL II peptide adopt a well-defined helical structure analogous to that formed by V(201)-C(210) of the native receptor. Moreover, a beta-turn around the D(22) (D(217)) and D(23) (D(218)) residues represents another feature of the ECL II. The NMR and fluorescent data also suggest the location of the two helical turns of TM V and the approximate location of the C-terminal end of the TM IV of the kappa opioid receptor. We modeled the kappa opioid receptor including the extracellular region of the receptor. The model of the ECL II utilized the information obtained from the NMR structural analysis of the ECL II peptide in a DPC micelle solution and the molecular dynamic simulations in a biphasic membrane environment. Our discovery of this amphiphilic helical region in the ECL II peptide by NMR and molecular modeling studies provides direct evidence that the sequence of residues V(201)-C(210) is likely to be the helical region that interacts with Dynorphin (Dyn) A [Paterlini, G., Portoghese, P. S., and Ferguson, D. M. (1997) J. Med. Chem. 40, 3254-3262]. We believe that this work offers further insight into the structural characteristics of the extracellular portions of the seven-TM kappa opioid receptor.     

Developmental stability in brown trout: are there any effects of heterozygosity or environmental stress?

We studied the developmental stability of brown trout, Salmo trutta L., in 10 populations (five acidified, five control) in Norway, measured as fluctuating asymmetry (FA) and departure from the morphological norm. We measured four meristic and four morphometric characters, and scored the level of biochemical heterozygosity at 49 loci (20 polymorphic). We reared eggs of a single population in a hatchery using four different water qualities (three replicates of each treatment) to test the effect of acidification stress on developmental instability. There were no significant differences in the level of FA, in departure from the morphological norm between brown trout sampled from lakes with acidified or control water qualities, or in brown trout hatched at different water qualities. There was no correlation between level of heterozygosity and FA or departure from the morphological norm, either when tested within populations or among populations. There were no single-locus effects on developmental stability tested for 11 loci. We conclude that measures of developmental stability or morphological variability are not useful for detecting acidification stress in brown trout. Furthermore, we conclude that developmental stability in our material varies independently of heterozygosity.     

Comparative studies in the morphology of Crenias weddelliana and Maferria indica with reference to Sphaerothylax abyssinica (Podostemaceae: Podostemoideae)

The scope of morphological plasticity of vegetative structures among Podostemoideae (Podostemaceae) is documented for Crenias weddelliana, a neotropical species, Maferria indica, a palaeotropical species, and Sphaerothylax abyssinica, from Kenya, and compared with related taxa. The study highlights intrinsic characters of the widely enigmatic plant body of many species of the subfamily Podostemoideae. These include dorsiventrality of shoots occurring irrespective of gravity, incurvate distichy and one‐sided spirodistichy correlated with shoot dorsiventrality, asymmetric leaves, and several types of positioning of the two prophylls and inflorescence structures. The homogeneity of hairs of the ‘Zeylanidium olivaceum type’ established on the subulate leaves of some Indian species is of taxonomic value. The latter also applies to the stipella (not stipule) on the asymmetric compound leaf in New World species. The morphological data represent a framework of features consistent for the subfamily. © 2002 The Linnean Society of London, Botanical Journal of the Linnean Society, 138 , 63–84.     

Aquatic invertebrates in riverine landscapes

1. Riverine systems consist of a mosaic of patches and habitats linked by diverse processes and supporting highly complex communities. Invertebrates show a high taxonomic and functional diversity in riverine systems and are in several ways important components of these systems. Their distribution patterns, movements and effects on ecological flows, testify to their importance in various landscape ecological processes. This paper reviews the invertebrate literature with respect to patterns and processes in the riverine landscape. 2. The distribution of invertebrates in riverine habitats is governed by a number of factors that typically act at different scales. Hence, the local community structure can be seen as the result of a continuous sorting process through environmental filters ranging from regional or catchment‐wide processes, involving speciation, geological history and climate, to the small‐scale characteristics of individual patches, such as local predation risk, substratum porosity and current velocity. 3. Dispersal is an important process driving invertebrate distribution, linking different ecological systems across boundaries. Dispersal occurs within the aquatic habitat as well as into the terrestrial surrounding, and also over land to other waterbodies. New genetic techniques have contributed significantly to the understanding of aquatic invertebrate dispersal and revealed the importance of factors such as physical barriers, synchrony of emergence and taxonomic affiliation. 4. Invertebrates affect the cycling of nutrients and carbon by being a crucial intermediate link between primary producers, detritus pools or primary consumers, and predators higher up in the trophic hierarchy. Suspension feeders increase the retention of carbon. The subsidies of aquatic invertebrates to the terrestrial ecosystem have been shown to be important, as are reciprocal processes such as the supply of terrestrial invertebrates that fall into the water. 5. Future studies are needed both to advance theoretical aspects of landscape ecology pertaining to the invertebrates in riverine systems and to intensify the experimental testing of hypotheses, for example with respect to the scaling of processes and to linkages between the terrestrial and aquatic systems. Another promising avenue is to take advantage of naturally steep environmental gradients, and of systems disturbed by humans, such as regulated rivers. By comparison with unimpaired reference sites, the mechanisms involved might be identified. The use of `natural' experiments, especially where environmental gradients are steep, is another technique with great potential.     

Using predictive models to estimate effects of flow regulation on net-spinning caddis larvae in North Swedish rivers

1. Effects of flow regulation on abundance and richness of net-spinning caddis larvae (Hydropsychoidea; Trichoptera) were examined in fifty-two North Swedish rivers. Models based on conditions at unregulated sites were used to predict densities at impacted sites and the residuals, i.e. the differences between observed and predicted numbers, were used as measures of the effects.
2. Two broad categories of impacted sites were identified. Sites with regulated but unreduced flow often have reduced seasonal flow variation and slightly enhanced short-term variation, while those with reduced flow usually have long periods of low and stable flow occasionally interrupted by short periods of violently fluctuating flow.
3. The abundance of net-spinning caddis larvae was significantly lower than predicted at both types of sites (reduction 30%), while richness was significantly reduced only at sites with reduced flow (reduction 20%).
4. A subsequent analysis of the relationship between the effects and variables altered by flow regulations, e.g. flow magnitude and flow variation, indicated that species richness was primarily affected by the occurrence of periods with zero flow, while negative effects of abundance were associated with high flow variability.
5. Significant negative effects on the abundance of individual taxa were observed for Cheumatopsyche lepida and Hydropsyche pellucidula at sites with regulated but unreduced flow.
6. Analyses of the relationships between the effects and regulation-related variables suggest that H. siltalai was significantly negatively affected by the occurrence of zero flow and that negative effects on Arctopsyche ladogensis were associated with flow reduction and high flow variability.     

Gyr Falcons, ptarmigan and microtine rodents in northern Sweden

A Gyr Falcon Falco rusticolus population in Northern Sweden (66°N, 17°E) was monitored from 1996 to 2002 in relation to its predator–prey interactions with its main and alternative prey species. Ptarmigan species Lagopus spp., and especially Rock Ptarmigan L. mutus , were the Gyr Falcons' most important prey and constituted more than 90% of the prey biomass. A 21-fold difference in ptarmigan abundance was found across Falcon breeding territories. However, this great variation in prey availability corresponded to only about a 10% shift in Gyr Falcon diet across territories, suggesting that the Falcons were reluctant or unable to compensate for declining ptarmigan availability by using alternative prey categories. Gyr Falcons did not respond functionally to microtine rodent abundance. Their diets were unaffected by a peak in the microtine rodent population cycle when Norwegian Lemmings Lemmus lemmus occurred in high numbers in the study area. Gyr Falcons responded numerically to their prey in two ways. First, there was a reproductive response with a significant relationship between the number of chicks fledged and the number of ptarmigan in the breeding territories. Secondly, although the Gyr Falcons did not utilize microtines as prey, there was a relationship between the microtine rodent abundance and the number of pairs that attempted to breed each year. This could be a result of an indirect community interaction, assuming that other predators switched from ptarmigan to microtines as prey, which could have had a positive effect on the breeding performance of the Gyr Falcons. The Gyr Falcons acted as true specialist predators, and their narrow food niche probably reflected a general lack of suitable alternative prey in the study area.     

Restoring freshwater ecosystems in riverine landscapes: the roles of connectivity and recovery processes

1. This paper introduces key messages from a number of papers emanating from the Second International Symposium on Riverine Landscapes held in August 2004 in Sweden, focusing on river restoration. Together these papers provide an overview of the science of river restoration, and point out future research needs. 2. Restoration tests the feasibility of recreating complex ecosystems from more simple and degraded states, thereby presenting a major challenge to ecological science. Therefore, close cooperation between practitioners and scientists would be beneficial, but most river restoration projects are currently performed with little or no scientific involvement. 3. Key messages emanating from this series of papers are: The scope, i.e. the maximum and minimum spatial extent and temporal duration of habitat use, of species targeted for restoration should be acknowledged, so that all relevant stages in their life cycles are considered. Species that have been lost from a stream cannot be assumed to recolonise spontaneously, calling for strategies to ensure the return of target species to be integrated into projects. Possible effects of invasive exotic species also need to be incorporated into project plans, either to minimise the impact of exotics, or to modify the expected outcome of restoration in cases where extirpation of exotics is impractical. 4. Restoration of important ecological processes often implies improving connectivity of the stream. For example, longitudinal and lateral connectivity can be enhanced by restoring fluvial dynamics on flood‐suppressed rivers and by increasing water availability in rivers subject to water diversion or withdrawal, thereby increasing habitat and species diversity. Restoring links between surface and ground water flow enhances vertical connectivity and communities associated with the hyporheic zone. 5. Future restoration schemes should consider where in the catchment to locate projects to make restoration most effective, consider the cumulative effects of many small projects, and evaluate the potential to restore ecosystem processes under highly constrained conditions such as in urban areas. Moreover, restoration projects should be properly monitored to assess whether restoration has been successful, thus enabling adaptive management and learning for the future from both successful and unsuccessful restorations.     

The crustacean ichnofossil Palaxius associated with callianassid body fossils in an Eocene methane-seep limestone, Humptulips Formation, Olympic Peninsula, Washington

Crustacean microcoprolites are preserved along with crustacean megafossils in an Eocene limestone within the Humptulips Formation in Grays Harbor County, Washington. The limestone formed at a methane seep, as revealed by early diagenetic carbonate phases resembling those of other seep limestones, δ¹³C_carbonate values as low as −27‰, and lipid biomarkers of prokaryotes involved in anaerobic oxidation of methane with δ¹³C values as low as −110‰. Recognizable crustacean megafossils are chiefly isolated chelipeds, akin to those of callianassid shrimp. The microcoprolites are pierced by ten longitudinal canals with crescent-shaped outlines in cross-section, arranged in two symmetrical groups. The symmetry plan and number of canals of the microcoprolites identify the Humptulips ichnospecies as Palaxius habanensis Brönnimann & Norton. The occurrence of decapod fossils along with microcoprolites suggests that callianassid shrimp were the producers of the Palaxius , supporting earlier work that attributed this ichnogenus to callianassids.     

Systems analysis of the renal function

A previous model of the renal function and compartmented whole body, which incorporated actions of antidiuretic hormone on urine flow and composition, is extended to include the influences of additional phenomena, many exogenous to the kidney. The phenomena incorporated were selected by orderly trial from among those mechanisms suggested in the literature and found by operation of the model to be important for adequately representing renal responses to various stresses. Specifically, these phenomena are: the intrinsic-osmotic effect of water; details of the body's antidiuretic hormone cycle; gastrointestinal exchanges; changes in glomerular filtration caused by alteration in blood volume and pressure; and resistance to flow across kidney tubular walls. Most of these phenomena involve non-steady-state, irreversible processes.The modeled renal function was found not to be sensitive to certain mechanisms sometimes associated with its operation. The most important is volume sensing, whereby extracellular volume changes are postulated to impose control on antidiuretic hormone production through stretch receptors in the circulatory system or through other volume sensors. Model investigations show that blood volume changes that alter blood pressure during stress can operate to affect kidney tubular-fluid flow in a manner which, when combined with other modeled kidney processes, yields correct urinary and other responses. No additional control on the antidiuretic hormone cycle through special volume receptors is required.The stresses to which the present model was exposed and responds correctly are: water loading through ingestion; hypertonic saline infusion; hypertonic urea solution ingestion; antidiuretic hormone dysfunction, as in diabetes insipidus; controlled rehydration after dehydration; and two combined stresses—hypertonic saline solution ingestion followed by water ingestion and the converse experiment. Most of these stresses involve transients in which the body becomes far removed from steady state. Different aspects of the total renal function, depending upon the specific stress, become more or less important in aiding the body to return to its original state.