Substrate cleavage analysis of furin and related proprotein convertases. A comparative study

We present the data and the technology, a combination of which allows us to determine the identity of proprotein convertases (PCs) related to the processing of specific protein targets including viral and bacterial pathogens. Our results, which support and extend the data of other laboratories, are required for the design of effective inhibitors of PCs because, in general, an inhibitor design starts with a specific substrate. Seven proteinases of the human PC family cleave the multibasic motifs R-X-(R/K/X)-R downward arrow and, as a result, transform proproteins, including those from pathogens, into biologically active proteins and peptides. The precise cleavage preferences of PCs have not been known in sufficient detail; hence we were unable to determine the relative importance of the individual PCs in infectious diseases, thus making the design of specific inhibitors exceedingly difficult. To determine the cleavage preferences of PCs in more detail, we evaluated the relative efficiency of furin, PC2, PC4, PC5/6, PC7, and PACE4 in cleaving over 100 decapeptide sequences representing the R-X-(R/K/X)-R downward arrow motifs of human, bacterial, and viral proteins. Our computer analysis of the data and the follow-on cleavage analysis of the selected full-length proteins corroborated our initial results thus allowing us to determine the cleavage preferences of the PCs and to suggest which PCs are promising drug targets in infectious diseases. Our results also suggest that pathogens, including anthrax PA83 and the avian influenza A H5N1 (bird flu) hemagglutinin precursor, evolved to be as sensitive to PC proteolysis as the most sensitive normal human proteins.     

TSG-6 regulates bone remodeling through inhibition of osteoblastogenesis and osteoclast activation

TSG-6 is an inflammation-induced protein that is produced at pathological sites, including arthritic joints. In animal models of arthritis, TSG-6 protects against joint damage; this has been attributed to its inhibitory effects on neutrophil migration and plasmin activity. Here we investigated whether TSG-6 can directly influence bone erosion. Our data reveal that TSG-6 inhibits RANKL-induced osteoclast differentiation/activation from human and murine precursor cells, where elevated dentine erosion by osteoclasts derived from TSG-6(-/-) mice is consistent with the very severe arthritis seen in these animals. However, the long bones from unchallenged TSG-6(-/-) mice were found to have higher trabecular mass than controls, suggesting that in the absence of inflammation TSG-6 has a role in bone homeostasis; we have detected expression of the TSG-6 protein in the bone marrow of unchallenged wild type mice. Furthermore, we have observed that TSG-6 can inhibit bone morphogenetic protein-2 (BMP-2)-mediated osteoblast differentiation. Interaction analysis revealed that TSG-6 binds directly to RANKL and to BMP-2 (as well as other osteogenic BMPs but not BMP-3) via composite surfaces involving its Link and CUB modules. Consistent with this, the full-length protein is required for maximal inhibition of osteoblast differentiation and osteoclast activation, although the isolated Link module retains significant activity in the latter case. We hypothesize that TSG-6 has dual roles in bone remodeling; one protective, where it inhibits RANKL-induced bone erosion in inflammatory diseases such as arthritis, and the other homeostatic, where its interactions with BMP-2 and RANKL help to balance mineralization by osteoblasts and bone resorption by osteoclasts.     

The influence of age on the use of potential enrichment objects and synchronisation of behaviour of pigs

This experiment aimed to identify how a pig's age affected the extent and synchrony of use of different environmental enrichment materials, and how this use changed over time. Ten diverse novel objects were each presented to three replicate litters of 3 weeks of age (sucklers) and three replicate groups of three animals of 5 (weaners) weeks and 13 (growers) weeks of age. Video recordings were made of the pigs’ behaviour over a period of 5 days and subsequently analysed for activity, inactivity and object directed behaviour of three animals per group on days 1 and 5. The observed performance of any given behaviour, when at least one other member of the group was also performing that behaviour, was compared with the probability that such concurrence occurred by chance and these results were used to calculate the degree of synchronisation. Gender had no effect on the duration of object use or approach latency. Growers displayed a shorter latency to approach the objects initially compared to sucklers and weaners (mean seconds; 2153 versus 2660 versus 980 for sucklers, weaners and growers, respectively, S.E.D. 542, p = 0.007). Sucklers used the objects to a much lesser extent than either the weaners or growers (mean duration object interaction (s); 129 versus 1253 versus 1412 for sucklers, weaners and growers, respectively, S.E.D. 93, p < 0.001). Overall object use decreased between days 1 and 5 (mean duration object interaction (s); 1326 versus 536 for days 1 and 5, respectively, S.E.D. 76, p < 0.001). All of the age groups synchronised their behaviour to a much greater extent than expected by chance. The sucklers showed a higher degree of synchrony of activity (K; 0.890 versus 0.776 versus 0.682 for sucklers, weaners and growers respectively, S.E.D. 0.013, p < 0.001) and inactivity (K; 0.963 versus 0.905 versus 0.909 respectively, S.E.D. 0.007, p < 0.001), but lower degree of synchrony for object directed behaviour (K; 0.149 versus 0.375 versus 0.370 respectively, S.E.D. 0.025, p < 0.001), than the weaners and growers. The degree of synchronisation of object directed behaviour decreased over the 5-day period, irrespective of age (K; 0.382 versus 0.214 for days 1 and 5 respectively, S.E.D. 0.020, p < 0.001). Significant correlations (r = 0.678–0.879) were found between the degree of synchrony and extent of object interaction only for the sucklers. Since pigs showed behavioural synchronisation, object availability should be considered when providing desirable enrichment in order to avoid excessive competition in larger commercial groups.     

Objective measures of health and well-being in laboratory rhesus monkeys (Macaca mulatta)

BACKGROUND: Non-human primates are an invaluable part of biomedical research. Strict regulations insure animals have a maximum likelihood of well-being and optimum health during the course of experimental procedures. Objective assessment of well-being is a critical component of these assurances. METHODS: Here we describe an objective and quantitative system we used to identify two well-being concerns in laboratory rhesus monkeys (Macaca mulatta). We provide a series of indicators for use by laboratory personnel to promote laboratory primate well-being. The indicators measure (1) potentially life threatening clinical concerns, (2) developing clinical issues, (3) atypical behaviors, and (4) laboratory performance. We include specific criteria to facilitate veterinary intervention. RESULTS: The assessment, applied to two case studies reported here, enabled swift veterinary intervention returning the animals to a healthy state. CONCLUSIONS: The measures described here provide a battery of observable and objective measures across multiple dimensions that can further ensure both excellent science and veterinary care.     

Ecological Correlates to Lemur Community Structure in Southeast Madagascar

The Fandriana-Marolambo forest corridor is one of the largest (ca. 250,000 ha) and least explored tracts of unprotected forest in southeast Madagascar. Although published range maps show continuous distributions for many lemurs throughout the region, there are few data on lemur community structure in the corridor. We aimed to determine lemur community structure, with its ecological correlates (altitude, agriculture, selective logging, and hunting), in the Fandriana-Marolambo forest corridor. We surveyed 7 sites and sighted 4 nocturnal taxa (Avahi laniger, Cheirogaleus major, Lepilemur mustelinus, and Microcebus rufus) and 6 diurnal taxa (Eulemur rubriventer, E. fulvus rufus, E. f. fulvus, Propithecus diadema edwardsi, Hapalemur griseus griseus, and Varecia variegata variegata). Composition of the lemur community was broadly similar to that of nearby protected areas (Ranomafana and Mantadia National Parks). However, we sighted no Hapalemur aureus, H. simus, or Indri indri, and observed Propithecus diadema edwardsi and Varecia variegata variegata at only 1 site each. We sighted an apparent hybrid form of Eulemur fulvus fulvus and E. f. rufus that may represent a new hybrid zone for lemurs. After testing for spatial autocorrelation, lemur diversity correlates negatively with altitude and agricultural intensity. Though the Government of Madagascar is assessing the corridor as a new national park, we suggest conservation plans for local lemurs are complicated by population isolation and lack of data on minimum viable size of the proposed protected area.     

Edge Effects on the Density of Cheirogaleus major

We investigated how greater dwarf lemur (Cheirogaleus major) densities, ambient air temperature, and dendrometrics (tree height and diameter) varied along forest edge-interior gradients in the Vohibola III Classified Forest in SE Madagascar. We also assessed if spatial variations in densities of Cheirogaleus major provide indirect evidence of increased predation pressure in the transition zone between edge and interior forest habitats, i.e., an ecological trap. We conducted diurnal temperature surveys (N = 394) and nocturnal surveys of Cheirogaleus major (N = 182) over 2 yr along 4 1250-m transects that ran perpendicular to the forest edge in Vohibola III. We did not see Cheirogaleus major from May to mid-September, and the highest sighting frequency occurred during October–November. Cheirogaleus major exhibited a negative edge response because densities ranged from low levels in edge habitats to higher levels in the forest interior. After we tested for spatial autocorrelation, edge-related variations in densities of Cheirogaleus major covaried most strongly with tree diameter. Edge responses of Cheirogaleus major may reflect spatial variations in fruit and liana abundance, though data are needed on the precise relationship between tree diameter and food production to confirm the relationship. Edge-related variations in densities of Cheirogaleus major may also provide indirect evidence of an ecological trap. Testing and controlling for spatial autocorrelation should be important components of future studies of primate conservation biology and ecology.     

The shaping of senescence in the wild

A central prediction of classical theories of senescence states that environments posing a high risk of mortality favor the evolution of rapid intrinsic deterioration, or ageing. Although widely cited as being largely corroborated by existing data, empirical support for this prediction has been mixed. Recent theory suggests that this expectation should only be realized under particular circumstances, and this could account for the equivocal empirical findings. Here, we highlight the salient features of some of the recent developments in this field and suggest some ways in which progress might be made. We argue that it is necessary to move beyond the simplistic classical expectation and to take a more comprehensive and precise approach to studies of senescence, both theoretically and empirically.     

Changes in abundance of native and introduced parasites (Hymenoptera: Braconidae), and of the target and non-target plant bug species (Hemiptera: Miridae), during two classical biological control programs in alfalfa.

High numbers of tarnished plant bugs [Lygus lineolaris (Palisot)], were once common in alfalfa, as was a low level of parasitism (9%) by the native Peristenus pallipes (Curtis). After the bivoltine European parasite Peristenus digoneutis Loan became well established, average parasitism of the first and second generations increased to 64%, and tarnished plant bug numbers dropped by 65%. This reduced host density eventually caused a decline in total parasitism by both parasite species to 22%. A few P. digoneutis also attacked the alfalfa plant bug, Adelphocoris lineolatus (Goeze), but did not reduce this pest or increase its parasitism rate. At another location, where P. digoneutis is not established, parasitism of first generation alfalfa plant bugs, an adventive (accidently introduced) pest, was increased to 21% by the introduced univoltine parasite, Peristenus conradi Marsh, and a slight reduction in the pest may have resulted. P. digoneutis did not parasitize the meadow plant bug, Leptopterna dolabrata (L.), an adventive pest of forage grasses, so did not affect this mirid or its parasite. Neither introduced parasite eliminated the native parasites of the tarnished or alfalfa plant bugs. The narrow host ranges of the braconid parasites of mirid nymphs are contrasted with the broad host range of the native tachinid parasite [Phasia robertsoni (Towns.)] of adult mirids. The major changes in mirid abundance and their mortality by parasites that slowly occurred during this 19-year study demonstrate the need for long-term field research, to adequately document and understand these complex interactions.