Solubilization of thyroid peroxidase by nonionic detergents.

We have examined the ability of nonionic detergents to solubilize thyroid peroxidase from a porcine thyroid particulate fraction, as measured by the release of peroxidase activity into the supernatant fraction after centrifugation at 105,000 X g for 1 hour and the retardation of the supernatant peroxidase of Sepharose 6B. The parameters of peroxidase solubilization by Triton X-100 have been investigated in detail. Under optimum conditions, 60 to 95% of the thryoid peroxidase and about 50% of the total protein is released into the 105,000 X g, 1-hour supernatant. Under the optimum conditions established with Triton X-100, a series of Brij detergents of different chemical structure were equally effective in releasing peroxidase and protein. The protein patterns of the supernatants obtained with these detergents were similar on sodium dodecyl sulfate-polyacrylamide electrophoresis gels, suggesting that the detergents studied release similar membrane proteins. The Triton X-100 and Brij 58 supernatants were chromatographed separately on Sepharose 6B equilibrated with 0.1% Triton X-100 or Brij 58, respectively. In both cases, 75 to 80% of the peroxidase activity was retarded, thereby indicating that the nonionic detergents effect solubilization of the peroxidase rather than dispersal of nonsedimentable membrane fragments. These studies report the first successful solubilization of thyroid peroxidase by nonionic detergents. Together with previous evidence from our laboratory, these experiments indicate that thyroid peroxidase is an integral membrane protein.     

Protist abundance and carbon concentration during a Phaeocystis-dominated bloom at an Antarctic coastal site

Summary Changes in the concentrations of bacteria, phytoplankton, protozoa, dissolved organic carbon (DOC), particulate organic carbon (POC), particulate carbohydrate (PCHO) and particulate organic nitrogen (PON) were followed throughout the summer at an Antarctic coastal site. The colonial prymnesiophyte Phaeocystis pouchetii was the first major phytoplankton species to bloom, reaching concentrations of 6 × 10⁷ cells · 1^–1 and remained numerically dominant for most of the summer. During the P. pouchetii bloom the concentration of most other autotrophs did not increase. Microheterotroph abundance peaked during or immediately after the Phaeocystis bloom. Their peak coincided with very high concentrations of organic carbon, particularly DOC which exceeded 100 mg · 1^–1, and low bacterial abundance. Maximum bacterial abundance was reached after the decline in microheterotroph numbers. Bacterial utilization of carbon substrates and microheterotroph grazing of bacteria and uptake of DOC may form an important link to higher trophic levels during Antarctic Phaeocystis blooms.     

FINS (forensically informative nucleotide sequencing): a procedure for identifying the animal origin of biological specimens.

The keys to identifying different species normally rely heavily on morphological characteristics. However, when an animal has been killed for food or sport, these markers are often destroyed or intentionally removed from the animal. This presents a problem for government agencies who are involved in determining the species origin of an animal or products derived from it in order to enforce conservation and/or health-related regulations. The problem is compounded if the meat of the animal has been processed in any way. We have developed a procedure called FINS (Forensically Informative Nucleotide Sequencing) that overcomes these problems. FINS has four components. First, methods have been developed that can isolate DNA from a wide range of biological samples including processed foods (e.g., canned, partially cooked, pickled, salted or smoked). Second, a specific segment of DNA is amplified using PCR. Third, the nucleotide sequence of the amplified segment of DNA is determined. Fourth, this nucleotide sequence is subjected to a phylogenetic analysis using a database, and the most closely related species is identified. FINS is a rapid, reliable and reproducible procedure that is based on established techniques. This procedure fills the need for an accurate method of determining the species identity of a specimen when this is not possible by conventional means.     

Calculation of sequence divergence from the thermal stability of DNA heteroduplexes

Summary Measurements are reported of the thermal stability of DNA heteroduplexes between clones of the eta-globin pseudogene from a variety of primates. The known sequences of this 7.1-kb region differ from each over a range from 1.6% for human versus chimp to nearly 12% for human versus spider monkey. Thermal stability was determined by standard hydroxyapatite thermal elution, and the results show a precisely linear decrease in thermal stability with divergence. The slope of the regression line is 1.18% sequence divergence per degree centigrade reduction in thermal stability.     

Pulmonary clearance of Mycoplasma pulmonis in rats with respiratory viral infections or of susceptible genotype.

We sought to determine whether or not increased severity of bronchopulmonary disease due to Mycoplasma pulmonis infection in rats with respiratory viral infections and in rats of susceptible genotype could result from altered pulmonary clearance. Pathogen-free rats were exposed to aerosols of radiolabeled M. pulmonis and the numbers of M. pulmonis colony-forming units, and amounts of radiolabel in the lungs were determined immediately after exposure or 4 hours later. Intrapulmonary killing of M. pulmonis during the 4-hour interval was determined from decreases in ratios of colony-forming units to radiolabel, and physical clearance was determined from decreases in radiolabel. Neither intrapulmonary killing nor physical clearance differed between control F344 rats and F344 rats inoculated with Sendai virus or sialodacryoadenitis virus, or between F344 and LEW rats. Rates of intrapulmonary killing and physical clearance were 64 +/- 3% and 44 +/- 2%, respectively (overall means +/- standard error).     

Interaction of epoxide hydrolase with itself and other microsomal proteins

The interactions of rat liver epoxide hydrolase (EC 3.3.2.3) with itself and with cytochromes P-450 and NADPH-cytochrome P-450 reductase were investigated in microsomal preparations and in reconstituted systems in which all of the enzymes are functionally active. Hydrodynamic measurements indicated that purified epoxide hydrolase behaves as a single aggregate of approximately 16 monomeric units and that further aggregation of the protein only occurs in the presence of high concentrations of phospholipid. Neither guanidine-HCl nor the nonionic detergent Lubrol PX was able to completely dissociate the aggregate into monomers. The interactions of epoxide hydrolase with NADPH-cytochrome P-450 reductase and the major forms of cytochrome P-450 isolated from phenobarbital- and 5,6-benzoflavone-treated rats were studied by Soret difference spectroscopy, by perturbation of the fluorescence of NADPH-cytochrome P-450 reductase and fluorescein-labeled epoxide hydrolase, and by CD spectroscopy. The spectra provided evidence that binding of the proteins to each other occurs and some of the results suggest that affinity constants are on the order of 10⁷, m^?1. The spectral perturbations were not observed with other intrinsic membrane proteins. When microsomes were treated with the crosslinking reagent dimethylsuberimidate and solubilized with detergents, epoxide hydrolase could be precipitated with antibodies raised to cytochromes P-450 or NADPH-cytochrome P-450 reductase. Transient times were determined for the conversion of 1-octene to octene-1,2-dihydrodiol in a reconstituted enzyme system and for the conversion of naphthalene to naphthalene-1,2-dihydrodiol in rat liver microscomes and compared to the transient times predicted from the enzymatic rates of hydrolysis of the intermediate epoxides. In all cases the observed transient times were shorter than expected, in support of the view that coupling of epoxide hydrolase with cytochromes P-450 occurs. These results support the view that epoxide hydrolase couples with cytochrome P-450-containing mixed-function oxidase systems and may have relevance to the metabolism of potentially harmful xenobiotics by these enzymes.     

Trace elements extractable by 2-ketogluconic acid from soils and their relationship to plant contents

Summary Trace element levels extractable by 2-ketogluconic acid (2-KG), ammonium acetate, acetic acid, EDTA, and DTPA were determined in three different soils of the Tarves association. The 2-ketogluconic acid was derived from 2-litre batch cultures of a soil bacterium,Erwinia sp. Pasture grasses and clovers growing on these soils were also analysed. At the same pH, 2-KG extracted more Co, Ni and Zn and considerably more Fe, Ti and V than ammonium acetate. The quantities of Cu, Mn, Mo, Ni and Zn extracted by 2-KG from the three soils generally reflected, in a similar way to the other extractants, the contents of these elements in grasses and clovers growing on the soils.     

Complex kinetics of bis(4-methylumbelliferyl)phosphate and hexadecanoyl(nitrophenyl)phosphorylcholine hydrolysis by purified sphingomyelinase in the presence of Triton X-100

We have examined the hydrolysis of the synthetic phosphodiesters, bis(4-methylumbelliferyl)phosphate and hexadecanoyl(nitrophenyl)phosphorylcholine, by purified placental sphingomyelinase (sphingomyelin cholinephosphohydrolase, EC 3.1.4.12) in the presence of Triton X-100. Triton X-100 enhanced activity with bis(4MU)phosphate at all concentrations tested. At very low concentrations of detergent, bis(4MU)phosphate hydrolysis approached zero. Our results indicate that bis(4MU)phosphate does not form a micelle with Triton X-100. The observed enhancement of bis(4MU)phosphate activity with Triton X-100 is likely due to a direct effect of detergent on the enzyme itself. HDNP-phosphorylcholine formed its own micelle (or liposome) in the absence of Triton X-100 and, at substrate concentrations below 4 mM, hydrolysis was inhibited by Triton X-100. The extent of this inhibition varied with detergent concentrations but could be totally eliminated at substrate values above 4 mM. For theoretical reasons kinetic constants which could be obtained with the HDNP-phosphorylcholine substrate at concentrations above 4 mM are not considered to be truly representative of the real values. We conclude that neither substrate is recommended to describe the true kinetic parameters pertaining to purified sphingomyelinase. In addition, bis(4MU)phosphate may not be suitable as an aid for diagnosis of sphingomyelinase deficiency states.U     

Spirometra mansonoides: lectin analysis of tegumental glycopeptides

Teguments from spargana of Spirometra mansonoides were disrupted and removed using 0.2% Triton ×-100. Tegumental fractions were obtained by differential centrifugation and the proteins and glycoproteins of this surface layer were partially characterized in 9 to 20% linear gradient sodium dodecyl sulfate-polyacrylamide slab gels. Electrophoretic analysis of the microtriches (brush border) and vesicular fractions revealed nine polypeptides that were common to these tegumental fractions. The polypeptide composition of the microtriches and vesicular fractions differed qualitatively and with respect to the relative concentrations of certain polypeptides. Glycopeptides of the microtriches and vesicular fractions were identified by the direct application of the following fluorescein isothiocyanate-conjugated lectins to slab gels: concanavalin A, wheat germ agglutinin, Ricinus communis agglutinin-120, soybean agglutinin, and Ulex europaeus agglutinin-1. The major polypeptides associated with the tegument were found to be glycopeptides. U. europaeus agglutinin-1 failed to label any tegumental glycopeptides. Based on the different sugar specificities of the lectins tested, the oligosaccharide chains of tegumental glycoproteins of S. mansonoides may contain the following carbohydrates: d-mannose, d-glucose, N-acetyl-d-glucosamine, N-acetylneuraminic acid, d-galactose, and N-acetyl-d-galactosamine.