Multi-temporal ecological analysis of Jeffrey pine beetle outbreak dynamics within the Lake Tahoe Basin

From 1991 to 1996, Jeffrey pine beetles (Dendroctonus jeffreyi Hopkins) (JPB) caused tree mortality throughout the Lake Tahoe Basin during a severe drought. Census data were collected annually on 10,721 trees to assess patterns of JPB-caused mortality. This represents the most extensive tree-level, spatiotemporal dataset collected to-date documenting bark beetle activity. Our study was an exploratory assessment of characteristics associated with the probability of successful JPB mass-attack (P_JPB) and group aggregation behavior that occurred throughout various outbreak phases. Numerous characteristics associated with P_JPB varied by outbreak phase although population pressure and forest density had positive associations during all phases. During the incipient phase, JPBs caused mortality in individual trees and small groups within toeslope topographic positions and P_JPB had a negative relationship with stem diameter. In the epidemic phase, JPB activity occurred in all topographic positions and caused mortality in spatially expanding clusters. P_JPB had a curvilinear relationship with tree diameter and a negative relationship with proximity to nearest brood tree. Majority (92–96 %) of mass-attacked trees were within 30 m of a brood tree during the peak epidemic years. During the post-epidemic phase, mortality clusters progressively decreased while dispersal distances between mass-attacked and brood trees increased. Post-epidemic P_JPB had a negative relationship with stem diameter and mortality was concentrated in the mid and upper-slope topographic positions. Results indicate mortality predictions are reasonable for the epidemic phase but not for incipient and post-epidemic phases. Ecological factors influencing JPB-caused tree mortality, clustered mortality patterns, and transitions from environmental to dynamic determinism are discussed.     

Molecular mechanisms underlying the entrance in secondary dormancy of Arabidopsis seeds

As seasons change, dormant seeds cycle through dormant states until the environmental conditions are favourable for seedling establishment. Dormancy cycle is widespread in the plant kingdom allowing the seeds to display primary and secondary dormancy. Several reports in the last decade have focused on understanding the molecular mechanisms of primary dormancy, but our knowledge regarding secondary dormancy is limited. Here, we studied secondary dormancy induced in Arabidopsis thaliana by incubating seeds at 25 °C in darkness for 4 d. By physiological, pharmacological, expression and genetics approaches, we demonstrate that (1) the entrance in secondary dormancy involves changes in the content and sensitivity to GA, but the content and sensitivity to ABA do not change, albeit ABA is required; (2) RGL2 promotes the entrance in secondary dormancy through ABI5 action; and (3) multivariate analysis with 18 geographical and environmental parameters of accession collection place suggests that temperature is an important variable influencing the induction of secondary dormancy in nature.     

Scale-dependent foraging costs: habitat use by rock hyraxes (Procavia capensis) determined using giving-up densities

Individuals select for habitats at different scales. Can a species’ response to different spatial and temporal heterogeneities be placed in a common currency? Is it possible to rank the relative importance of different habitat features on the organism's behavior and ecology? Do the effects of different spatial and temporal heterogeneities interact in predictable ways? To address these questions, we quantified hyrax habitat use at a series of rocky outcrops (koppies) and an isolated gorge in Augrabies Falls National Park, South Africa. We measured the hyraxes’ perceptions of feeding opportunities and costs using giving‐up densities (GUDs) within experimental food patches. At very small spatial scales (2–3 m), we tested whether hyraxes have lower GUDs under cover (shrubs or rocks) or 2–3 m away in the open. Hyraxes valued cover highly, consistently showing lower GUDs in cover microhabitats. This preference did not result from differences in energetic costs, as hyraxes did not track sun in winter or shade in summer. At moderate spatial scales (10–80 m), we tested whether hyraxes act as central place foragers with lower GUDs closer to their dens. GUDs increased with increasing distance to dens at four koppies, but not at the gorge. At larger spatial scales, preferences differed between colonies based on differences in habitat structure, with hyraxes on similar structures (koppies) behaving similarly. We evaluated how foraging costs varied with temporal heterogeneity within the day, among days, and among seasons. Hyraxes showed their lowest GUDs in the early mornings and late afternoons. Hyraxes shifted foraging locations among days, which may result from sentinels shifting location on consecutive days and/or hyraxes managing their food. Differences between GUDs during the various sample periods were not seasonally correlated. We conclude that spatial and temporal habitat utilization by hyraxes may be driven more by predation risk rather than other costs.     

Use of genetic markers to quantify bumblebee foraging range and nest density

Bumblebees (Hymenoptera: Apidae) are important pollinators of crops and wildflowers, but many species have suffered dramatic declines in recent decades. Strategies for their conservation require knowledge of their foraging range and nesting density, both of which are poorly understood. Previous studies have mainly focussed on the cosmopolitan bumblebee species Bombus terrestris , and implicitly assume this to be representative of other species. Here we use a landscape-scale microsatellite study to estimate the foraging range and nesting density of two ecologically dissimilar species, B. terrestris and B. pascuorum . Workers were sampled along a 10 km linear transect and 8–9 polymorphic microsatellite markers used to identify putative sisters. We provide the first published estimates of the number of colonies using a circle of radius 50 m in an agricultural landscape: 20.4 for B. terrestris and 54.7 for B. pascuorum . Estimates of nest density differed significantly between the two species: 13 km⁻² for B. terrestris and 193 km⁻² for B. pascuorum . Foraging ranges also differed substantially, with B. pascuorum foraging over distances less than 312 m and B. terrestris less than 625 m. Clearly bumblebee species differ greatly in fundamental aspects of their ecology. This has significant implications for the development of conservation strategies for rare bumblebees and isolated plant populations, for the management of bumblebees as pollinators, and for predicting patterns of gene flow from genetically modified plants.     

Increased survival and breeding performance of double breeders in little penguins Eudyptula minor,New Zealand: evidence for individual bird quality?

The little penguin Eudyptula minor is unique among penguin species in being able to fledge chicks from two clutches in one breeding season. Pairs laying two clutches in a given season make a higher reproductive investment, and may be rewarded by a higher reproductive success as they may raise twice as many chicks as pairs laying one clutch. The higher effort made by pairs laying two clutches could correlate negatively with survival, future reproductive performance or offspring survival, indicating a cost of reproduction. Conversely, a positive relationship between the number of clutches produced in a given breeding season and survival, future reproductive performance or offspring survival would indicate that birds laying two clutches belonged to a category of birds with higher fitness, compared to birds laying only one clutch in the season. In this study we used a long‐term data set taken from an increasing population of little penguins in Otago, SE New Zealand. We modelled the relationship between the number of clutches laid in a breeding season and survival probability, reproductive performance in the next breeding season and first year survival of offspring using capture‐recapture modelling.
Birds laying two clutches produced 1.7 times more fledglings during a breeding season than pairs laying one clutch. We found that birds laying two clutches had a higher probability of breeding in the following breeding season, a higher probability of laying two clutches in the following breeding season and a higher survival probability. There was no overall difference in post‐fledging survival between the young of birds producing one clutch and the young of birds producing two clutches. However, the survival of young of single clutch breeders declined with laying date, whereas the young of double clutch breeders had the same survival rate irrespective of laying date. For a subset of data with birds of known age, we found evidence that the probability of laying two clutches increased with age. However, there were also indications for differences among birds in the tendency to lay two clutches that could not be attributed to age. We tentatively interpret our results as evidence of quality difference among little penguin breeders.     

Understanding the 'conservative' view on abortion

The philosophical literature would have us believe that the conservative view on abortion is based on the claim that the fetus is a person from the time of conception. Given the widespread acceptance of this analysis, it comes as something of a surprise to learn that it conflicts with a number of major arguments offered in support of the conservative view. I argue, in the present paper, that a careful examination of these inconsistencies establishes that the personhood analysis is mistaken: the conservative view is based on the natural process of fetal development, not the personhood of the fetus.     

Discovery and uses of pegvisomant: a growth hormone antagonist

Growth hormone (GH) is a well established participant in several complex physiological processes including growth, differentiation, and metabolism. Recombinant human GH is a drug that has been approved for use for several clinical conditions where the action of GH is diminished or completely lacking. Thus there is considerable interest in developing novel drugs that modify the function of GH. Only in the last several decades have the detailed structural features of GH along with its interaction with its receptor been elucidated. In this review we summarise the basic structural and functional properties of GH, its receptor and their interaction. In addition, we discuss the discovery and development of an effective GH receptor antagonist, pegvisomant, and summarise potential therapeutic uses of this drug.     

CCR5 receptor antagonists: discovery and SAR study of guanylhydrazone derivatives

High throughput screening (HTS) led to the identification of the guanylhydrazone of 2-(4-chlorobenzyloxy)-5-bromobenzaldehyde as a CCR5 receptor antagonist. Initial modifications of the guanylhydrazone series indicated that substitution of the benzyl group at the para-position was well tolerated. Substitution at the 5-position of the central phenyl ring was critical for potency. Replacement of the guanylhydrazone group led to the discovery of a novel series of CCR5 antagonists.     

An empirical test of freshwater vicariance via river capture

River capture is a geomorphological process through which stream sections are displaced from one catchment to another, and it may represent a dominant facilitator of interdrainage transfer and cladogenesis in freshwater-limited taxa. However, few studies have been conducted in a manner to explicitly test the biological significance of river capture. Here we present a multispecies phylogeographical analysis to test whether the nonmigratory fish fauna of the Von River (South Island, New Zealand) is the product of a well-documented, Late Quaternary capture of a section of the Oreti River (Southland drainage). Specifically, we predict that nonmigratory fishes of the Von River will exhibit closer genetic affinities with those of Southland, rather than those of the Clutha system, into which the Von River presently drains. Mitochondrial DNA phylogeography (control region and cytochrome b sequence data) and analysis of nuclear orthologues of mtDNA sequences indicate that 'flathead'Galaxias of the Von River (n = 31, three sites) have greatest genetic affinities with those of Southland (Galaxias 'southern', n = 216, 38 sites), rather than with those of the Clutha River (Galaxias sp. 'D', n = 73, 32 sites). Likewise, Von River 'roundhead'Galaxias (n = 52, four sites) have greatest genetic affinities with those of Southland drainages (Galaxias gollumoides, n = 223, 58 sites), rather than with those of the Clutha River (Galaxias pullus, Galaxias anomalus, Galaxias gollumoides of the Nevis tributary; n = 68, 32 sites). These findings are consistent with our predictions that genetic affinities of the nonmigratory fish fauna in the Von River would reflect past, rather than present, drainage connections. Consequently, river capture is responsible for the nonmigratory fish fauna of the Von River. In a broader context, river capture has frequently influenced the distribution of genetic lineages among catchments in New Zealand freshwater-limited fish, and its biogeographical significance may have been underestimated in other regions.