Insights into the Interactions of Fasciola hepatica Cathepsin L3 with a Substrate and Potential Novel Inhibitors through In Silico Approaches

BackgroundFasciola hepatica is the causative agent of fascioliasis, a disease affecting grazing animals, causing economic losses in global agriculture and currently being an important human zoonosis. Overuse of chemotherapeutics against fascioliasis has increased the populations of drug resistant parasites. F. hepatica cathepsin L3 is a protease that plays important roles during the life cycle of fluke. Due to its particular collagenolytic activity it is considered an attractive target against the infective phase of F. hepatica.Conclusions/SignificanceThe present study is the first computer-aided drug design approach against F. hepatica cathepsins. Here we predict the principal determinants of binding of FhCL3 in complex with a natural substrate by detailed energetic characterization of protease interaction surface. We also propose novel compounds as FhCL3 inhibitors. Overall, these results will foster the future rational design of new inhibitors against FhCL3, as well as other F. hepatica cathepsins.     

Characterization of planktonic and biofilm cells from two filamentous cyanobacteria using a shotgun proteomic approach

Abstract

Cyanobacteria promote marine biofouling with significant impacts. A qualitative proteomic analysis, by LC-MS/MS, of planktonic and biofilm cells from two cyanobacteria was performed. Biofilms were formed on glass and perspex at two relevant hydrodynamic conditions for marine environments (average shear rates of 4?s^?1 and 40?s^?1). For both strains and surfaces, biofilm development was higher at 4?s^?1. Biofilm development of Nodosilinea sp. LEGE 06145 was substantially higher than Nodosilinea sp. LEGE 06119, but no significant differences were found between surfaces. Overall, 377 and 301 different proteins were identified for Nodosilinea sp. LEGE 06145 and Nodosilinea sp. LEGE 06119. Differences in protein composition were more noticeable in biofilms formed under different hydrodynamic conditions than in those formed on different surfaces. Ribosomal and photosynthetic proteins were identified in most conditions. The characterization performed gives new insights into how shear rate and surface affect the planktonic to biofilm transition, from a structural and proteomics perspective.     

Keep in touch: Does spatial overlap correlate with contact rate frequency?

Quantifying animal contact rate is crucial both in fundamental and applied studies to understand the evolution of sociality and predict the spread of infectious diseases. Researchers typically use home-range overlap among individuals as a proxy of contact rate, assuming a positive correlation. However, very few studies have assessed how the correlation between home-range overlap and contact rate may vary with ecological context. We used proximity loggers to quantify intraspecific contact rate among raccoons (Procyon lotor) and explored the correlation between contact rate and home-range overlap in different seasons. We monitored 15 female raccoons that formed 121 dyads during summer 2010 and winter 2011. We compared contact rate with the 5 most common overlap indices: home-range overlap proportion, home-range overlap probability, utilization distribution overlap index (UDOI), volume of intersection index, and Bhattacharyya's affinity index. Our results generally supported the contention of a positive and significant correlation between home-range overlap and intraspecific contact rate in raccoons. The strength of the relationship differed among seasons and indices, being weaker during winter than summer for home-range overlap proportion and home-range overlap probability. When contact rates were high, their frequency had stronger correlations with the UDOI and volume of intersection index indices than with the other indices. Our results suggest that the UDOI performs better than other indices, as we obtained a good contact rate–home-range overlap correlation with this index with animals both aggregated and randomly distributed in space. © 2012 The Wildlife Society.     

β-1,3-glucanase class III promotes spread of PVYNTN and improves in planta protein production

Glucanases are enzymes regulating the size exclusion limit and permeability of plasmodesmata and play a role in biotic stress. In plant genomes, they are encoded as relatively large gene families divided into four classes. Most studies of plant virus interactions have focused on glucanases from classes I and II. In our study, we have evaluated the role of the β-1,3-glucanase class III (Glu-III) gene in the potato–potato virus Y^NTN (PVY^NTN) interaction and implemented the findings to plant biotechnology application. Potato cultivars Désirée and Santé, which are tolerant and extremely resistant to PVY^NTN, respectively, were stably transformed with Agrobacterium tumefaciens harbouring constructs for Glu-III overexpression. Localization of Glu-III protein in patches within the cell wall was determined by tagging the Glu-III protein with green fluorescent protein. Transgenic and non-transgenic plants were challenged with PVY^NTN and its multiplication and spreading was followed. Differences in viral spread were observed between transgenic lines overexpressing Glu-III and non-transgenic lines, with stronger and faster viral spread in transgenic Désirée, and some multiplication in transgenic Santé. In addition, the ability of Glu-III to improve in planta protein production after agroinfiltration was tested. The results have shown that Glu-III overexpression enables faster spreading of vectors between cells and better protein production, which could be beneficial in improving in planta protein production system using viral vectors.     

Calcium effects on life-history traits in a wild population of the great tit (Parus major): analysis of long-term data at several spatial scales

Calcium is an essential micronutrient for birds during egg formation and for skeletal development in nestlings. Habitat level studies suggest that birds breeding in low-calcium areas may be limited in the size or number of eggs they lay and in the quality of their nestlings. However, as birds forage non-randomly and may travel considerable distances to acquire calcium, describing different breeding environments in terms of their calcium availability is problematic. Here we explore the spatial relationships between 300-fold variation in soil calcium and the life-history traits of ca. 6,000 pairs of great tits breeding in a single continuous woodland over 41 years. Controlling for other habitat differences, we found strong positive associations between soil calcium, clutch size and recruitment at spatial scales of over 300 m from each nestbox, suggesting that females may have been travelling inter-territorially to acquire calcium during egg formation. Soil calcium near each nestbox (mean distance = 58 m) was a strong positive predictor of mean fledgling mass, suggesting that local calcium was more important during nestling stages. We found no effect of soil calcium on lay-date or egg mass. This study is the first to provide evidence that small woodland passerines are limited by calcium availability at several different spatial scales. However, experimental work is necessary to test the causality of these spatial patterns.     

Processing of snake venom -amino acid oxidase during intracellular transport

The isoelectrofocusing patterns of -amino acid oxidase (LAO) from venom gland homogenates and of the secreted venom of Vipera palaestinae have been compared. The LAO isozyme profile of actively synthesizing gland spans over a wider range of pIs (4.8–6.0) and includes more variants as compared with the profile of the secreted venom. A basic shift of the isoelectrofocusing pattern of LAO obtained by treatment of the gland homogenate or the venom with neuraminidase indicates that sialic acid residues are responsible for the changes in the electronegativity of the isozymes. Analyses of subcellular fractions show that the microsomal fraction of the venom gland homogenate exhibits the highest multiplicity of molecular forms of LAO, whereas the fraction including the secretory granules has an isozyme profile similar to the venom. Double labelling experiments show that the newly synthesized LAO include isozymes which span over a wide range of pIs, whereas later on labelling of the more acidic isozymes is prominent. The results obtained may suggest that the sialic acid residues which are attached to LAO during its transport serve as “markers” for secretion.     

Non-crop vegetation associated with chili pepper agroecosystems promote the abundance and survival of aphid predators

Habitat manipulation has long been used as strategy to enhance beneficial insects in agroecosystems. Non-crop weed strips have the potential of supplying food resources to natural enemies, even when pest densities are low. However, in tropical agroecosystems there is a paucity of information pertaining to the resources provided by non-crop weeds and their interactions with natural enemies. In this study we evaluated (a) whether weeds within chili pepper fields affect the diversity and abundance of aphidophagous species; (b) whether there are direct interactions between weeds and aphidophagous arthropods; and (c) the importance of weed floral resources for survival of a native and exotic coccinellid in chili pepper agroecosystems. In the field, aphidophagous arthropods were dominated by Coccinellidae, Syrphidae, Anthocoridae, Neuroptera and Araneae, and these natural enemies were readily observed preying on aphids, feeding on flowers or extrafloral nectaries, and using plant structures for oviposition and/or protection. Survival of native Cycloneda sanguinea (Coleoptera: Coccinellidae) differed between plant species, with significantly greater survival on Ageratum conyzoides and Bidens pilosa. However, no evidence was gathered to suggest that weed floral resources provided any nutritional benefit to the exotic Harmonia axyridis (Coleoptera: Coccinellidae). This research has provided evidence that naturally growing weeds in chili pepper agroecosystems can affect aphid natural enemy abundance and survival, highlighting the need for further research to fully characterize the structure and function of plant resources in these and other tropical agroecosystems.