Tuning of collagen triple-helix stability in recombinant telechelic polymers

The melting properties of various triblock copolymers with random coil middle blocks (100-800 amino acids) and triple helix-forming (Pro-Gly-Pro)(n) end blocks (n = 6-16) were compared. These gelatin-like molecules were produced as secreted proteins by recombinant yeast. The investigated series shows that the melting temperature (T(m)) can be genetically engineered to specific values within a very wide range by varying the length of the end block. Elongation of the end blocks also increased the stability of the helices under mechanical stress. The length-dependent melting free energy and T(m) of the (Pro-Gly-Pro)(n) helix appear to be comparable for these telechelic polymers and for free (Pro-Gly-Pro)(n) peptides. Accordingly, the T(m) of the polymers appeared to be tunable independently of the nature of the investigated non-cross-linking middle blocks. The flexibility of design and the amounts in which these nonanimal biopolymers can be produced (g/L range) create many possibilities for eventual medical application.     

Interaction and ovicidal activity of nematophagous fungus Pochonia chlamydosporia on Taenia saginata eggs

The ovicidal activity of the nematophagous fungi Pochonia chlamydosporia (isolates VC1 and VC4), Duddingtonia flagrans (isolate AC001) and Monacrosporium thaumasium (isolate NF34) on Taenia saginata eggs was evaluated under laboratory conditions. T. saginata eggs were plated on 2% water-agar with fungal isolates and controls without fungus and examined after 5, 10 and 15 days. At the end of the experiment P. chlamydosporia showed ovicidal activity against T. saginata eggs (p < 0.05), mainly for internal egg colonization with results of 12.8% (VC1) and 2.2% (VC4); 18.1% (VC1) and 7.0% (VC4); 9.76% (VC1) and 8.0% (VC4) at 5, 10 and 15 days, respectively. The other fungi showed only lytic effect without morphological damage to the eggshell. Results demonstrated that P. chlamydosporia was effective in vitro against T. saginata eggs unlike the other fungi.     

Multiplicity-adjusted inferences in risk assessment: benchmark analysis with quantal response data

A primary objective in quantitative risk or safety assessment is characterization of the severity and likelihood of an adverse effect caused by a chemical toxin or pharmaceutical agent. In many cases data are not available at low doses or low exposures to the agent, and inferences at those doses must be based on the high-dose data. A modern method for making low-dose inferences is known as benchmark analysis, where attention centers on the dose at which a fixed benchmark level of risk is achieved. Both upper confidence limits on the risk and lower confidence limits on the "benchmark dose" are of interest. In practice, a number of possible benchmark risks may be under study; if so, corrections must be applied to adjust the limits for multiplicity. In this short note, we discuss approaches for doing so with quantal response data.     

CtBP3/BARS drives membrane fission in dynamin-independent transport pathways

Membrane fission is a fundamental step in membrane transport. So far, the only fission protein machinery that has been implicated in in vivo transport involves dynamin, and functions in several, but not all, transport pathways. Thus, other fission machineries may exist. Here, we report that carboxy-terminal binding protein 3/brefeldin A-ribosylated substrate (CtBP3/BARS) controls fission in basolateral transport from the Golgi to the plasma membrane and in fluid-phase endocytosis, whereas dynamin is not involved in these steps. Conversely, CtBP3/BARS protein is inactive in apical transport to the plasma membrane and in receptor-mediated endocytosis, both steps being controlled by dynamin. This indicates that CtBP3/BARS controls membrane fission in endocytic and exocytic transport pathways, distinct from those that require dynamin.     

Phylogeography and population genetics of the endangered Amazonian manatee, Trichechus inunguis Natterer, 1883 (Mammalia, Sirenia)

We used mitochondrial DNA control region sequences to examine phylogeography and population differentiation of the endangered Amazonian manatee Trichechus inunguis. We observe lack of molecular differentiation among localities and we find weak association between geographical and genetic distances. However, nested clade analysis supports restricted gene flow and/or dispersal with some long-distance dispersal. Although this species has a history of extensive hunting, genetic diversity and effective population sizes are relatively high when compared to the West Indian manatee Trichechus manatus. Patterns of mtDNA haplotype diversity in T. inunguis suggest a genetic disequilibrium most likely explained by demographic expansion resulting from secession of hunting and enforcement of conservation and protective measures. Phylogenetic analysis of T. manatus and T. inunguis haplotypes suggests that T. inunguis is nested within T. manatus, effectively making T. manatus a paraphyletic entity. Paraphyly of T. manatus and recent divergence times of T. inunguis and the three main T. manatus lineages suggest a possible need for a taxonomic re-evaluation of the western Atlantic Trichechus.     

The pro-oxidant role of protein SH groups of hemoglobin in rat erythrocytes exposed to menadione.

Menadione is selectively toxic to erythrocytes. Although GSH is considered a primary target of menadione, intraerythrocyte thiolic alterations consequent to menadione exposure are only partially known. In this study alterations of GSH and protein thiols (PSH) and their relationship with methemoglobin formation were investigated in human and rat red blood cells (RBC) exposed to menadione. In both erythrocyte types, menadione caused a marked increase in methemoglobin associated with GSH depletion and increased oxygen consumption. However, in human RBC, GSH formed a conjugate with menadione, whereas, in rat RBC it was converted to GSSG, concomitantly with a loss of protein thiols (corresponding to menadione arylation), and an increase in glutathione-protein mixed disulfides (GS-SP). Such differences were related to the presence of highly reactive cysteines, which characterize rat hemoglobin (cys beta125). In spite of the greater thiol oxidation in rat than in human RBC, methemoglobin formation and the rate of oxygen consumption elicited by menadione in both species were rather similar. Moreover, in repeated experiments under N2 or CO-blocked heme, it was found that menadione conjugation (arylation) in both species was not dependent on the presence of oxygen or the status of heme. Therefore, we assumed that GSH (human RBC) and protein (rat RBC) arylation was equally responsible for increased oxygen consumption and Hb oxidation. Moreover, thiol oxidation of rat RBC was strictly related to methemoglobin formation.     

Hydrolysis of rice straw to fermentable sugars byTrichoderma enzymes

Summary ATrichoderma sp. (IMB-Tr) isolated from rice straw possessed cellulolytic and xylanolytic activity, comparable to those produced byTrichoderma reesei QM 9414 (a proven cellulolytic fungus). IMB-Tr produced 2.9 and 1.9 times, respectively, greater -glucosidase activity compared toT. reesei when grown on microcrystalline cellulose and rice straw. Percentage enzymic hydrolysis increased with increase in the sodium hydroxide concentration used in the pretreatment of rice straw and with the increase of enzyme concentration used in the hydrolysis. The extracellular enzyme fraction ofT. reesei possessed greater hydrolytic power than that of IMB-Tr. However, when a combined enzyme preparation from the two organisms was used, an appreciable degree of synergism was observed; an increase in reducing sugars up to 39% was seen. The reducing sugar produced by enzymic hydrolysis was mainly glucose, xylose and cellobiose. Fermentation of a 4.8% (w/v) sugar hydrolysate (produced by the enzymic hydrolysis of rice straw) bySaccharomyces cerevisiae produced 10.7 g/l of ethanol compared to 18.8 g/l produced by the fermentation of 4.8% (w/v) pure glucose.

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Resumen Se ha aíslado a partir de paja de arroz una cepa deTrichoderma sp. (IMB-Tr) que posee actividades celulolíticas y xilanolíticas comparables a las deTrichoderma reesei QM 9414 (un hongo probadamnete celulolítico). IMB-Tr produjo 2.9 y 1.9 veces más actividad -glucosidásica queT. reesei cuando ambos se hicieron crecer en celulosa microcristalina y en paja de arroz respectivamente. El porcentaje de hidrolisis enzimática se incrementó con el aumento en la concentración del hidróxido sódico empleado en el pretratamiento de la paja de arroz y con el aumento de la concentración enzimática utilizada en la hidrolisis. La fracción extracelular enzimática deT. reesei poseía un mayor poder hidrolítico que la de IMB-Tr, sin embargo cuando se usó un preparado enzimático combinado de ambos microorganismos se obtuvo un apreciable efecto sinérgico, observándose un incremento de hasta un 39% de los azucares reductores producidos. Estos azucares fueron principalmente glucosa, xilosa y celobiosa. La fermentación de un 4.8% (p/v) del hidrolisado azucarado (producido por la hidrolisis enzimática de la paja de arroz) porSaccharomyces cerevisiae produjo 10.7 g/l de etanol comparado a 18.8 g/l obtenidos de la fermentación de 4.8% (p/v) de glucosa pura.

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Résumé Une souche deTrichoderma sp. (IMB-Tr), isolée à partir de paille de riz, a une activité cellulolytique et xylanolytique comparable à celle deTrichoderma reesei QM 9414 (champignon cellulolytique reconnu). L'activité -glucosidase d'IMB-Tr cultivé sur cellulose micro-cristalline ou sur paille de riz est, respectivement, 2.9 et 1.9 fois plus élevée que celle deT. reesei. Le pourcentage d'hydrolyse enzymatique croit avec la concentration de la soude employée pour le pré-traitement de la paille et avec la concentration d'enzyme utilisée pour l'hydrolyse. La fraction exocellulaire de l'enzyme a une activité hydrolysante plus élevée dans le cas deT. reesei que dans celui de IMB-Tr. Cependant, si on emploie un mélange des activités enzymatiques des deux organismes, on constate une nette synergie et un accroissement des sucres réducteurs allant jusqu'à 39%. Les sucres réducteurs obtenus par hydrolyse enzymatique comprennent principalement du glucose, du xylose et du cellobiose. La fermentation parSaccharomyces cerevisiae d'un hydrolysat enzymatique de paille de riz contenant 4.8% (poids/vol.) de sucres fournit 10.7 g/l d'éthanol, au lieu de 18.8 g/l obtenus par fermentation de glucose pur à la même concentration.

     

Cryptosexuality and the genetic diversity paradox in coffee rust, Hemileia vastatrix

Background

Despite the fact that coffee rust was first investigated scientifically more than a century ago, and that the disease is one of the major constraints to coffee production - constantly changing the socio-economic and historical landscape of the crop - critical aspects of the life cycle of the pathogen, Hemileia vastatrix, remain unclear. The asexual urediniospores are regarded as the only functional propagule: theoretically, making H. vastatrix a clonal species. However, the well-documented emergence of new rust pathotypes and the breakdown in genetic resistance of coffee cultivars, present a paradox.

Methods and Results

Here, using computer-assisted DNA image cytometry, following a modified nuclear stoichiometric staining technique with Feulgen, we show that meiosis occurs within the urediniospores. Stages of spore development were categorised based on morphology, from the spore-mother cell through to the germinating spore, and the relative nuclear DNA content was quantified statistically at each stage.

Conclusions

Hidden sexual reproduction disguised within the asexual spore (cryptosexuality) could explain why new physiological races have arisen so often and so quickly in Hemileia vastatrix. This could have considerable implications for coffee breeding strategies and may be a common event in rust fungi, especially in related genera occupying the same basal phylogenetic lineages.