Terrestrial mesofauna in above- and below-ground habitats: Taylor Valley,Antarctica

In the McMurdo Dry Valleys region of Antarctica, above-ground production is often limited to mosses and algae that occur near seasonally available liquid water such as ephemeral streams and ice-covered lakes. Compared to surrounding dry soils these critical transition zones are highly productive and harbor a more diverse assemblage of soil animals, including rotifers, tardigrades, nematodes and microarthropods. Current cooling trends punctuated by warming events, and predicted future climate warming are expected to affect the hydrology of this region and thereby biodiversity and ecosystem functioning. Above-ground communities are exposed to more variable temperature, relative humidity and greater UV radiation, and may be more vulnerable to climate change than sediments beneath, which are buffered from short-term changes. In this study, we compared above- and below-ground communities associated with either moss or cyanobacterial mats along glacial-fed streams and lakes differing in biological complexity (diversity, productivity and habitat suitability). All groups of soil fauna were more abundant in the above-ground material compared to the sediment beneath. Common indicators of habitat suitability (chlorophyll a, soil pH, soil salinity, and soil nitrogen) did not differ between vegetation types but were significantly different among sites. Variables most correlated with invertebrate abundances were sediment salinity, chlorophyll a content and nitrogen concentration. The McMurdo Dry Valleys are expected to become warmer and wetter as a result of climate change. This will likely increase the area of suitable habitat for most soil animals as areas of liquid water potentially increase and become available for longer periods of time.     

Physical connectivity in the Mesoamerican Barrier Reef System inferred from 9 years of ocean color observations

Ocean color images acquired from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) from 1998 to 2006 were used to examine the patterns of physical connectivity between land and reefs, and among reefs in the Mesoamerican Barrier Reef System (MBRS) in the northwestern Caribbean Sea. Connectivity was inferred by tracking surface water features in weekly climatologies and a time series of weekly mean chlorophyll-a concentrations derived from satellite imagery. Frequency of spatial connections between 17 pre-defined, geomorphological domains that include the major reefs in the MBRS and river deltas in Honduras and Nicaragua were recorded and tabulated as percentage of connections. The 9-year time series of 466 weekly mean images portrays clearly the seasonal patterns of connectivity, including river plumes and transitions in the aftermath of perturbations such as hurricanes. River plumes extended offshore from the Honduras coast to the Bay Islands (Utila, Cayo Cochinos, Guanaja, and Roatán) in 70% of the weekly mean images. Belizean reefs, especially those in the southern section of the barrier reef and Glovers Atoll, were also affected by riverine discharges in every one of the 9 years. Glovers Atoll was exposed to river plumes originating in Honduras 104/466 times (22%) during this period. Plumes from eastern Honduras went as far as Banco Chinchorro and Cozumel in Mexico. Chinchorro appeared to be more frequently connected to Turneffe Atoll and Honduran rivers than with Glovers and Lighthouse Atolls, despite their geographic proximity. This new satellite data analysis provides long-term, quantitative assessments of the main pathways of connectivity in the region. The percentage of connections can be used to validate predictions made using other approaches such as numerical modeling, and provides valuable information to ecosystem-based management in coral reef provinces. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Comparative analysis of neurological disorders focuses genome-wide search for autism genes

The behaviors of autism overlap with a diverse array of other neurological disorders, suggesting common molecular mechanisms. We conducted a large comparative analysis of the network of genes linked to autism with those of 432 other neurological diseases to circumscribe a multi-disorder subcomponent of autism. We leveraged the biological process and interaction properties of these multi-disorder autism genes to overcome the across-the-board multiple hypothesis corrections that a purely data-driven approach requires. Using prior knowledge of biological process, we identified 154 genes not previously linked to autism of which 42% were significantly differentially expressed in autistic individuals. Then, using prior knowledge from interaction networks of disorders related to autism, we uncovered 334 new genes that interact with published autism genes, of which 87% were significantly differentially regulated in autistic individuals. Our analysis provided a novel picture of autism from the perspective of related neurological disorders and suggested a model by which prior knowledge of interaction networks can inform and focus genome-scale studies of complex neurological disorders.     

3q26 amplification is an effective negative triage test for LSIL: a historical prospective study

Background

Women with low grade squamous intraepithelial lesions (LSIL) at cervical cancer screening are currently referred for further diagnostic work up despite 80% having no precancerous lesion. The primary purpose of this study is to measure the test characteristics of 3q26 chromosome gain (3q26 gain) as a host marker of carcinogenesis in women with LSIL. A negative triage test may allow these women to be followed by cytology alone without immediate referral to colposcopy.

Methods and Findings

A historical prospective study was designed to measure 3q26 gain from the archived liquid cytology specimens diagnosed as LSIL among women attending colposcopy between 2007 and 2009. 3q26 gain was assessed on the index liquid sample; and sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) were measured at immediate triage and at 6–16 months after colposcopic biopsy. The sensitivity of 3q26 gain measured at immediate triage from automated and manually reviewed tests in 65 non-pregnant unique women was 70% (95% CI: 35, 93) with a NPV of 89% (95% CI: 78, 96). The sensitivity and NPV increased to 80% (95% CI: 28, 99) and 98% (95% CI: 87, 100), respectively, when only the automated method of detecting 3q26 gain was used.

Conclusions

3q26 gain demonstrates high sensitivity and NPV as a negative triage test for women with LSIL, allowing possible guideline changes to routine surveillance instead of immediate colposcopy. Prospective studies are ongoing to establish the sensitivity, specificity, PPV and NPV of 3q26 gain for LSIL over time.     

Sleep duration and BMI in a sample of young adults

We examined the association between sleep duration and BMI in young adults, and, specifically, in possible gender differences. The population-based sample included 955 young men and 1051 young women (mean age = 25.3 years, s.d. = 1.7) who participated in Project EAT-III (Eating and Activity in Teens and Young Adults)-III. In 2008-2009, study participants completed a survey, on which they reported their weight, height, and typical bed and awakening times. Gender-specific regression models estimated cross-sectional associations between sleep duration and weight status, adjusting for age, race, SES, family structure, depressive symptoms, physical activity, and sedentary and dietary behaviors. In multivariable-adjusted linear regression models, an hour increase in sleep was associated with a -0.38 (-0.70, -0.048) BMI in men. Men who slept <7 h had a 1.4 unit higher mean BMI (27.9; 95% confidence interval (CI): 26.9, 28.9) than men who slept 7-9 h/day (26.5; 95% CI: 26.1, 27.0). Prevalence estimates of overweight (BMI ≥ 25) and obesity (BMI ≥ 30) were also inversely associated with sleep duration among men. Sleep duration was not associated with BMI, overweight, or obesity in women. Among women, but not men, there was a statistically significant positive association between trouble falling or staying asleep and mean BMI. Sleep may be an important modifiable risk factor for obesity, particularly in young adult men.     

Anisotropic circular dichroism signatures of oriented thylakoid membranes and lamellar aggregates of LHCII

In photosynthesis research, circular dichroism (CD) spectroscopy is an indispensable tool to probe molecular architecture at virtually all levels of structural complexity. At the molecular level, the chirality of the molecule results in intrinsic CD; pigment–pigment interactions in protein complexes and small aggregates can give rise to excitonic CD bands, while “psi-type” CD signals originate from large, densely packed chiral aggregates. It has been well established that anisotropic CD (ACD), measured on samples with defined non-random orientation relative to the propagation of the measuring beam, carries specific information on the architecture of molecules or molecular macroassemblies. However, ACD is usually combined with linear dichroism and can be distorted by instrumental imperfections, which given the strong anisotropic nature of photosynthetic membranes and complexes, might be the reason why ACD is rarely studied in photosynthesis research. In this study, we present ACD spectra, corrected for linear dichroism, of isolated intact thylakoid membranes of granal chloroplasts, washed unstacked thylakoid membranes, photosystem II (PSII) membranes (BBY particles), grana patches, and tightly stacked lamellar macroaggregates of the main light-harvesting complex of PSII (LHCII). We show that the ACD spectra of face- and edge-aligned stacked thylakoid membranes and LHCII lamellae exhibit profound differences in their psi-type CD bands. Marked differences are also seen in the excitonic CD of BBY and washed thylakoid membranes. Magnetic CD (MCD) spectra on random and aligned samples, and the largely invariable nature of the MCD spectra, despite dramatic variations in the measured isotropic and anisotropic CD, testify that ACD can be measured without substantial distortions and thus employed to extract detailed information on the (supra)molecular organization of photosynthetic complexes. An example is provided showing the ability of CD data to indicate such an organization, leading to the discovery of a novel crystalline structure in macroaggregates of LHCII.