The Comparative Method in Cross-Cultural and Cross-Species Research

Comparative methodology is controversial in biology and the related field of research on behavioral and psychological traits across human cultures. We critically examine this controversy. We argue that the widely held opinion of non-independence among historically-related cultures and species errs by not recognizing and incorporating into research the two distinct and complementary categories of causation that account for an extant trait—the phylogenetic origin of the trait (cultural or otherwise) and the maintenance of the trait after its phylogenetic origin. Phylogenetic correction for non-independence is required in the comparative study of a trait’s phylogenetic origin, but is irrelevant for the comparative study of the causation of a trait’s maintenance after its phylogenetic origin. Across cultures, even closely related cultures, causes that are specific to each culture act to maintain cultural similarities, which makes such similarities independent. Among species, even closely related species, similarities are maintained by lineage-specific, and hence independent, evolutionary causal processes. Comparative methodology has been criticized as being inferior to other types of scientific methodology (e.g., experimentation), because it is based on correlational data. This criticism is erroneous because, all scientific findings are correlational, and in hypothesis testing, the ability of an empirical finding to address causation depends solely upon the control of confounding variables, not the type of scientific method itself.     

A simple temperature-based model predicts the upper latitudinal limit of the temperate coral Astrangia poculata

A few hardy ahermatypic scleractinian corals occur in shallow waters well outside of the tropics, but little is known concerning their distribution limits at high latitudes. Using field data on the growth of Astrangia poculata over an annual period near its northern range limit in Rhode Island, USA, we tested the hypothesis that the distribution of this coral is limited by low temperature. A simple model based on satellite sea surface temperature and field growth data at monthly temporal resolution was used to estimate annual net coral growth north and south of the known range limit of A. poculata. Annual net coral growth was the result of new polyp budding above ~10 °C minus polyp loss below ~10 °C, which is caused by a state of torpor that leads to overgrowth by encroaching and settling organisms. The model accurately predicted A. poculata’s range limit around Cape Cod, Massachusetts, predicting no net growth northward as a result of corals’ inability to counteract polyp loss during winter with sufficient polyp budding during summer. The model also indicated that the range limit of A. poculata coincides with a decline in the benefit of associating with symbiotic dinoflagellates (Symbiodinium B2/S. psygmophilum), suggesting that symbiosis may become a liability under colder temperatures. While we cannot exclude the potential role of other coral life history traits or environmental factors in setting A. poculata’s northern range limit, our analysis suggests that low temperature constrains the growth and persistence of adult corals and would preclude coral growth northward of Cape Cod.     

Population genetic data of a model symbiotic cnidarian system reveal remarkable symbiotic specificity and vectored introductions across ocean basins

The Aiptasia–Symbiodinium symbiosis is a promising model for experimental studies of cnidarian–dinoflagellate associations, yet relatively little is known regarding the genetic diversity of either symbiotic partner. To address this, we collected Aiptasia from 16 localities throughout the world and examined the genetic diversity of both anemones and their endosymbionts. Based on newly developed SCAR markers, Aiptasia consisted of two genetically distinct populations: one Aiptasia lineage from Florida and a second network of Aiptasia genotypes found at other localities. These populations did not conform to the distributions of described Aiptasia species, suggesting that taxonomic re‐evaluation is needed in the light of molecular genetics. Associations with Symbiodinium further demonstrated the distinctions among Aiptasia populations. According to 18S RFLP, ITS2‐DGGE and microsatellite flanker region sequencing, Florida anemones engaged in diverse symbioses predominantly with members of Symbiodinium Clades A and B, but also C, whereas anemones from elsewhere harboured only S. minutum within Clade B. Symbiodinium minutum apparently does not form a stable symbiosis with other hosts, which implies a highly specific symbiosis. Fine‐scale differences among S. minutum populations were quantified using six microsatellite loci. Populations of S. minutum had low genotypic diversity and high clonality (R = 0.14). Furthermore, minimal population structure was observed among regions and ocean basins, due to allele and genotype sharing. The lack of genetic structure and low genotypic diversity suggest recent vectoring of Aiptasia and S. minutum across localities. This first ever molecular‐genetic study of a globally distributed cnidarian and its Symbiodinium assemblages reveals host–symbiont specificity and widely distributed populations in an important model system.     

A change in twist of actin provides the force for the extension of the acrosomal process in limulus sperm: the false-discharge reaction

One of the most spectacular motions is the generation of the acrosomal process in the limulus sperm. On contact with the egg, the sperm generates a 60-mum-long process that literally drills its way through the jelly surrounding the egg. This irresversible reaction takes only a few seconds. We suggested earlier that this motion is driven by a change in twist of the actin filaments comprising the acrosomal process. In this paper we analyze the so-called false discharge, a reversible reaction, in which the acrosomal filament bundle extends laterally from the base of the sperm and not anteriorly from the apex. Unlike the true discharge, which is straight, the false discharge is helical. Before extension, the filament bundle is coiled about the base of the sperm. In the coil, the bundle is not smoothly bent but consists of arms (straight segments) and elbows (corners) so that the coil looks like a 14-sided polygon. The extension of the false discharge works as follows: starting at the base of the bundle, the filaments change their twist which concomitantly changes the orientations of the elbows relative to each other; that is, in the coil, the elbows all like in a common plane, but after the change in twist, the plane of each elbow is rotated to be perpendicular to that of its neighbors. This change transforms the bundle from a compact coil into an extended left- handed helix. Because the basal end of the bundle is unconstrained, the extension is lateral. The true discharge works the same way but starts at the apical end of the bundle. The apical end, however, is constrained by its passage through the nuclear canal, which directs the extention anteriorly. Unlike the false discharge, during the true discharge the elbows are melted out, making the reaction irreversible. This study shows that rapid movement can be regenerated by actin without myosin and gives us insight into the molecular mechanism.     

Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae

The identification and application of reliable fossil calibrations represents a key component of many molecular studies of evolutionary timescales. In studies of plants, most paleontological calibrations are associated with macrofossils. However, the pollen record can also inform age calibrations if fossils matching extant pollen groups are found. Recent work has shown that pollen of the myrtle family, Myrtaceae, can be classified into a number of morphological groups that are synapomorphic with molecular groups. By assembling a data matrix of pollen morphological characters from extant and fossil Myrtaceae, we were able to measure the fit of 26 pollen fossils to a molecular phylogenetic tree using parsimony optimisation of characters. We identified eight Myrtaceidites fossils as appropriate for calibration based on the most parsimonious placements of these fossils on the tree. These fossils were used to inform age constraints in a Bayesian phylogenetic analysis of a sequence alignment comprising two sequences from the chloroplast genome (matK and ndhF) and one nuclear locus (ITS), sampled from 106 taxa representing 80 genera. Three additional analyses were calibrated by placing pollen fossils using geographic and morphological information (eight calibrations), macrofossils (five calibrations), and macrofossils and pollen fossils in combination (12 calibrations). The addition of new fossil pollen calibrations led to older crown ages than have previously been found for tribes such as Eucalypteae and Myrteae. Estimates of rate variation among lineages were affected by the choice of calibrations, suggesting that the use of multiple calibrations can improve estimates of rate heterogeneity among lineages. This study illustrates the potential of including pollen-based calibrations in molecular studies of divergence times.     

Seasonal changes of food and water consumption and urine production of the marmot, Marmota flaviventris

In early spring, food and water consumption and the excretion and clearances of urine and solutes reached maximal rates. Water consumption exceeded food intake and urine production and plasma osmolality was lowest. Toward early and late summer, water intake decreased faster than food consumption and urine production. Urea excretion and clearances diminished with food consumption, while creatinine clearance decreased only slightly. Plasma osmolality increased. The data are consistent with rehydration soon after hibernation is completed, followed by a period of weight gain and dehydration in preparation for the next prolonged period of hibernation.