Nitrous oxide emissions from a cropped soil in a semi-arid climate

Understanding nitrous oxide (N₂O) emissions from agricultural soils in semi‐arid regions is required to better understand global terrestrial N₂O losses. Nitrous oxide emissions were measured from a rain‐fed, cropped soil in a semi‐arid region of south‐western Australia for one year on a sub‐daily basis. The site included N‐fertilized (100 kg N ha^?1 yr^?1) and nonfertilized plots. Emissions were measured using soil chambers connected to a fully automated system that measured N₂O using gas chromatography. Daily N₂O emissions were low (?1.8 to 7.3 g N₂O‐N ha^?1 day^?1) and culminated in an annual loss of 0.11 kg N₂O‐N ha^?1 from N‐fertilized soil and 0.09 kg N₂O‐N ha^?1 from nonfertilized soil. Over half (55%) the annual N₂O emission occurred from both N treatments when the soil was fallow, following a series of summer rainfall events. At this time of the year, conditions were conducive for soil microbial N₂O production: elevated soil water content, available N, soil temperatures generally >25 °C and no active plant growth. The proportion of N fertilizer emitted as N₂O in 1 year, after correction for the ‘background’ emission (no N fertilizer applied), was 0.02%. The emission factor reported in this study was 60 times lower than the IPCC default value for the application of synthetic fertilizers to land (1.25%), suggesting that the default may not be suitable for cropped soils in semi‐arid regions. Applying N fertilizer did not significantly increase the annual N₂O emission, demonstrating that a proportion of N₂O emitted from agricultural soils may not be directly derived from the application of N fertilizer. ‘Background’ emissions, resulting from other agricultural practices, need to be accounted for if we are to fully assess the impact of agriculture in semi‐arid regions on global terrestrial N₂O emissions.     

Missing methane emissions from leaves of terrestrial plants

The controversial claim that attached leaves of terrestrial plants emit CH₄ aerobically remains to be corroborated. Here, we report CH₄ fluxes and CO₂ exchange rates for leaves of the C₄ species Zea mays using a high-accuracy traceable online analytical system. In contrast to earlier results for Z. mays , our measurements provide no evidence for substantial aerobic CH₄ emissions from photosynthesizing leaves illuminated with photosynthetically active radiation ( λ =400–700 nm), or from dark-respiring leaves. Preliminary measurements with the same system indicated a similar lack of aerobic CH₄ emissions in the light or dark from leaves of the C₃ species Nicotiana tabacum . These findings are supported by independent high-precision ¹³C-labeling studies that also failed to confirm substantial aerobic CH₄ emissions from plants. Nevertheless, we are not able to exclude the possibility that CH₄ emissions from plants may be linked to nonenzymatic processes with an action spectrum lying outside the wavelength range for photosynthesis.     

Global decomposition experiment shows soil animal impacts on decomposition are climate‐dependent

Climate and litter quality are primary drivers of terrestrial decomposition and, based on evidence from multisite experiments at regional and global scales, are universally factored into global decomposition models. In contrast, soil animals are considered key regulators of decomposition at local scales but their role at larger scales is unresolved. Soil animals are consequently excluded from global models of organic mineralization processes. Incomplete assessment of the roles of soil animals stems from the difficulties of manipulating invertebrate animals experimentally across large geographic gradients. This is compounded by deficient or inconsistent taxonomy. We report a global decomposition experiment to assess the importance of soil animals in C mineralization, in which a common grass litter substrate was exposed to natural decomposition in either control or reduced animal treatments across 30 sites distributed from 43°S to 68°N on six continents. Animals in the mesofaunal size range were recovered from the litter by Tullgren extraction and identified to common specifications, mostly at the ordinal level. The design of the trials enabled faunal contribution to be evaluated against abiotic parameters between sites. Soil animals increase decomposition rates in temperate and wet tropical climates, but have neutral effects where temperature or moisture constrain biological activity. Our findings highlight that faunal influences on decomposition are dependent on prevailing climatic conditions. We conclude that (1) inclusion of soil animals will improve the predictive capabilities of region‐ or biome‐scale decomposition models, (2) soil animal influences on decomposition are important at the regional scale when attempting to predict global change scenarios, and (3) the statistical relationship between decomposition rates and climate, at the global scale, is robust against changes in soil faunal abundance and diversity.     

Know thy enemy: Behavioural response of a native mammal (Rattus lutreolus velutinus) to predators of different coexistence histories

Abstract Predation is recognized as a major selective pressure influencing population dynamics and evolutionary processes. Prey species have developed a variety of predator avoidance strategies, not least of which is olfactory recognition. However, within Australia, European settlement has brought with it a number of introduced predators, perhaps most notably the red fox (Vulpes vulpes) and domestic cat (Felis catus), which native prey species may be unable to recognize and thus avoid due to a lack of coexistence history. This study examined the response of native Tasmanian swamp rats (Rattus lutreolus velutinus) to predators of different coexistence history (native predator‐ spotted‐tail quoll (Dasyurus maculatus), domestic cats and the recently introduced red fox). We used an aggregate behavioural response of R. l. velutinus to predator integumental odour in order to assess an overall behavioural response to predation risk. Rattus lutreolus velutinus recognized the integumental odour of the native quoll (compared with control odours) but did not respond to either cat or fox scent (compared with control odur). In contrast, analyses of singular behaviours resulted in the conclusion that rats did not respond differentially to either native or introduced predators, as other studies have concluded. Therefore, measuring risk assessment behaviours at the level of overall aggregate response may be more beneficial in understanding and analysing complex behavioural patterns such as predator detection and recognition. These results suggest that fox and cat introductions (and their interactive effects) may have detrimental impacts upon small native Tasmanian mammals due to lack of recognition and thus appropriate responses.     

WtsE, an AvrE-family type III effector protein of Pantoea stewartii subsp. stewartii, causes cell death in non-host plants

Pantoea stewartii subsp. stewartii ( Pnss ) causes Stewart's bacterial wilt of sweet corn and leaf blight of maize. The pathogenicity of Pnss depends on synthesis of extracellular polysaccharide and an Hrp type III secretion system. WtsE, a type III secreted effector protein, is essential for the virulence of Pnss on corn. It belongs to the AvrE family of effectors, which includes DspA/E from Erwinia amylovora and AvrE1 from Pseudomonas syringae . Previously, WtsE was shown to cause disease-associated cell death in its host plant, sweet corn. Here, we examine the biological activity of WtsE in several non-host plants. WtsE induced cell death in Nicotiana benthamiana , tobacco, beet and Arabidopsis thaliana when it was transiently produced in plant cells following agroinfiltration or translocated into plant cells from Pnss , Escherichia coli or Pseudomonas syringae pv. phaseolicola ( Pph ). WtsE-induced cell death in N. benthamiana , tobacco and beet resembled a hypersensitive response and in N. benthamiana it was delayed by cycloheximide. Interestingly, WtsE strongly promoted the growth of Pnss in N. benthamiana prior to the onset of cell death. Deletion derivatives of WtsE that failed to induce cell death in N. benthamiana and tobacco also did not complement wtsE mutants of Pnss for virulence in sweet corn, indicating a correlation between the two activities. WtsE also induced cell death in A. thaliana , where it suppressed basal defences induced by Pph . Thus, WtsE has growth-promoting, defence-suppressing and cell death-inducing activities in non-host plants. Expression of WtsE also prevented the growth of yeast, possibly due to an innate toxicity to eukaryotic cells.     

Food resources of shredders and other benthic macroinvertebrates in relation to shading conditions in tropical Hong Kong streams

1. Gut content analyses (GCA) of benthic macroinvertebrates, supplemented by carbon and nitrogen stable isotope analyses (SIA), were used to determine the relative contribution of leaf litter and autochthonous food sources to consumer biomass in five shaded and five unshaded streams in tropical Hong Kong. 2. Only four obligate shredders and two facultative shredders were identified out of 58 morphospecies dissected. Non‐shredder taxa consumed little (<23% food eaten) coarse particulate organic matter (CPOM) in spite of its abundance in streams, and GCA revealed that fine particulate organic matter was the major food (25–99%) of most primary consumers. 3. Stable isotope analysis results were in general agreement with the findings of GCA, and confirmed that three of the four obligate shredders had a high dependence (55–78% of assimilated carbon) on CPOM. 4. Autochthonous energy sources were important in all streams: non‐shredding primary consumers examined, which accounted for 72% of total macroinvertebrate abundance in shaded streams, derived (on average) 61% of their biomass from autochthonous foods; the equivalent values for unshaded streams were 72% (abundance) and 71% (biomass).     

Experimental dietary manipulations for determining the relative importance of allochthonous and autochthonous food resources in tropical streams

1. Autochthonous sources of organic matter appear to make a minor contribution to food webs in temperate forest streams, but their roles in supporting consumer biomass in tropical lotic environments have received little attention. We investigated the importance of autochthonous and allochthonous food sources to Brotia hainanensis (Pachychilidae), a detritivorous and algivorous snail common in Hong Kong hillstreams, using experimental dietary manipulations and assimilation-based analyses, including stoichiometry, carbon (C) and nitrogen (N) stable isotopes and fatty acid (FA) profiles.
2. Juvenile B. hainanensis collected in Pak Ngau Shek Stream were cultured under controlled laboratory conditions and fed for 2 months with either conditioned Liquidambar formosana (Hamamelidaceae) leaf litter or periphyton. Samples of B. hainanensis were also collected from the stream at the end of the experiment for comparison with snails reared in the laboratory.
3. Periphyton and leaf litter exhibited marked differences in C/N ratios, δ ¹³C and δ ¹⁵N values and FA profiles. Stable isotope analysis and FA profiling of laboratory-reared and field-collected B. hainanensis both confirmed that snails relied primarily on autochthonous foods, especially periphytic diatoms and cyanobacteria. Stoichiometry results indicated that periphyton was a more nutritious food (with lower C/N ratio) than leaf litter.
4. This is the first study demonstrating that the combined use of stable isotopes and FA profiles is an effective diagnostic tool to trace the basal food sources of consumers in natural stream habitats. Our findings further support the hypothesis that primary production in tropical streams is generally more important to aquatic consumers than inputs of terrestrial detritus.     

TWO NEW PARROTS (PSITTACIFORMES) FROM THE LOWER EOCENE FUR FORMATION OF DENMARK

Abstract:  Two new fossil psittaciform birds from the Lower Eocene 'Mo Clay' (Fur Formation) of Denmark ( c . 54 Ma) are described. An unnamed specimen is assigned to the extinct avian family of stem-group parrots, Pseudasturidae (genus and species incertae sedis ), while a second ( Mopsitta tanta gen. et sp. nov.) is the largest fossil parrot yet known. Both specimens are the first fossil records of these birds from Denmark. Although the phylogenetic position of Mopsitta is unclear (it is classified as family incertae sedis ), this form is phylogenetically closer to Recent Pstittacidae than to other known Palaeogene psittaciforms and may, therefore, represent the oldest known crown-group parrot.