Subgenomic promoter recognition by the norovirus RNA-dependent RNA polymerases

The replication enzyme of RNA viruses must preferentially recognize their RNAs in an environment that contains an abundance of cellular RNAs. The factors responsible for specific RNA recognition are not well understood, in part because viral RNA synthesis takes place within enzyme complexes associated with modified cellular membrane compartments. Recombinant RNA-dependent RNA polymerases (RdRps) from the human norovirus and the murine norovirus (MNV) were found to preferentially recognize RNA segments that contain the promoter and a short template sequence for subgenomic RNA synthesis. Both the promoter and template sequence contribute to stable RdRp binding, accurate initiation of the subgenomic RNAs and efficient RNA synthesis. Using a method that combines RNA crosslinking and mass spectrometry, residues near the template channel of the MNV RdRp were found to contact the hairpin RNA motif. Mutations in the hairpin contact site in the MNV RdRp reduced MNV replication and virus production in cells. This work demonstrates that the specific recognition of the norovirus subgenomic promoter is through binding by the viral RdRp.     

中国台湾尼蝗属三新种及种检索表（直翅目, 蝗总科, 斑腿蝗科, 秃蝗亚科）(英文)

记述了中国台湾尼蝗属 Niitakacris Tinkham, 1936 的3新种。新种阿里山尼蝗 Niitakacris arishanensis sp. nov.后足股节内侧非红色和雄性尾须基部的最大宽度为端部宽度的4倍,可与本属所有已知种相区别。新种夏氏尼蝗 Niitakacris xiai sp. nov.与红胫尼蝗 N. rosaceanum 和台湾尼蝗 Niitakacris taiwanensis sp. nov.近似,不同之处为中胸腹板中隔的长度大于最狭处,前翅不到达腹部第1节背板后缘。新种台湾尼蝗 Niitakacris taiwanensis sp. nov.与红胫尼蝗 N. rosaceanum 近似, 不同之处为复眼较小,纵径为眼下沟长的1.4 倍;两尾片分开;肛上板基部纵沟较短,不到达中部,沟端圆,不尖。列出了尼蝗属全部5个种的检索表。     

The trophic responses of two different rodent–vector–plague systems to climate change

Plague, the causative agent of three devastating pandemics in history, is currently a re-emerging disease, probably due to climate change and other anthropogenic changes. Without understanding the response of plague systems to anthropogenic or climate changes in their trophic web, it is unfeasible to effectively predict years with high risks of plague outbreak, hampering our ability for effective prevention and control of the disease. Here, by using surveillance data, we apply structural equation modelling to reveal the drivers of plague prevalence in two very different rodent systems: those of the solitary Daurian ground squirrel and the social Mongolian gerbil. We show that plague prevalence in the Daurian ground squirrel is not detectably related to its trophic web, and that therefore surveillance efforts should focus on detecting plague directly in this ecosystem. On the other hand, plague in the Mongolian gerbil is strongly embedded in a complex, yet understandable trophic web of climate, vegetation, and rodent and flea densities, making the ecosystem suitable for more sophisticated low-cost surveillance practices, such as remote sensing. As for the trophic webs of the two rodent species, we find that increased vegetation is positively associated with higher temperatures and precipitation for both ecosystems. We furthermore find a positive association between vegetation and ground squirrel density, yet a negative association between vegetation and gerbil density. Our study thus shows how past surveillance records can be used to design and improve existing plague prevention and control measures, by tailoring them to individual plague foci. Such measures are indeed highly needed under present conditions with prevailing climate change.     

秦岭南坡锐齿栎次生林空间结构特征分析

该研究采用坐标定位方法对秦岭南坡不同坡向锐齿栎次生林样地内胸径DBH≥5cm的乔木进行调查,记录树种名称、坐标、胸径、高度、冠幅、生长状况等因子,运用角尺度、大小比数和混交度3个指数分析不同坡向锐齿栎次生林的空间结构,探寻不同坡向锐齿栎林空间结构的形成和差异。结果显示:(1)调查样地内物种多样性丰富,锐齿栎重要值最大,长势良好,占据主要生态空间。(2)两种坡向中,角尺度取值为0.5的个体数均过半,表明随机分布是锐齿栎次生林的主要分布方式。(3)优势木、亚优势木、中庸木、劣态木和绝对劣态木所占比重均为20%左右,表明林木大小差异不明显,在空间结构单元中,林木较稳定,阳坡优势木个体数高于阴坡。(4)两种坡向中,混交度取值大于0.5林木个体分别为84%和73%,表明多数林木个体处于中度、强度和极强度混交状态。研究表明,秦岭南坡锐齿栎次生林聚集度不高、混交良好、分化程度较高,锐齿栎种群优势度明显,林分整体暂时处于相对稳定状态。     

奇古菌亚硝酸盐还原酶基因相似基因的多样性

摘要:【目的】氨氧化古菌(Ammonia-oxidizing archaea,AOA)是奇古菌门中的唯一类群,广泛分布于各个生态系统中,对氮素生物地球化学循环起着重要作用。亚硝酸还原酶是反硝化作用的关键酶,目前关于AOA反硝化作用的研究较少,对AOA 亚硝酸盐还原酶基因多样性的研究有利于揭示AOA在反硝化中的作用。【方法】本研究以水体、沉积物和土壤为研究对象,构建了奇古菌样的nirK基因克隆文库,研究了这些环境中nirK相似基因的多样性。【结果】对奇古菌样的nirK基因文库及其序列分析表明:湖水及其沉积物的 nirK基因克隆文库得到10个OTUs,菜田土壤和水样则有8个OTUs;系统发育进化树表明这些nirK氨基酸序列和Candidatus Nitrosopumilus koreensis AR1,Nitrosopumilus maritimus SCM1最为相似,但相似度较低(53%－68%)。克隆文库多样性指数分析表明:所有样品都存在不同类型的nirK基因,水体样品nirK基因类型的多样性和均匀度高于土壤样品,菜田土壤的nirK基因类型多样性最高,分布最均匀。【结论】本研究表明土壤和淡水环境中奇古菌门nirK基因也具有较高的多样性,并且这些基因型与海洋样品差异非常大,这些基因编码的亚硝酸盐还原酶可能对这些环境中的反硝化作用有重要意义。     

家蚕Bmyan基因的克隆表达和作为microRNA 7靶基因的验证

microRNAs(miRNAs)是一类长约22 nt的非编码RNA,通过与其靶基因3′端非翻译区(3′-UTR)的结合来调节各项生命活动。克隆表达家蚕Bmyan基因,验证其是否是bmo-miR-7的靶基因对于深入研究家蚕变态发育机制有重要意义。基于同源性检索和PCR扩增,克隆了家蚕Bmyan基因CDS全长,编码476个氨基酸。序列分析表明,家蚕YAN蛋白的氨基酸序列保守,含SAM-PNT和ETs结构域。芯片数据、RT-PCR和定量PCR的检测结果表明,Bmyan在五龄3 d的家蚕头部、体壁、卵巢中高量表达,在其余组织中低量表达或不表达。在幼虫期,Bmyan表达水平相对较低,但在上蔟期和蛹期前4 d高量表达。通过3′RACE克隆了Bmyan基因的3′-UTR。RNAhybrid在线软件预测了其3'-UTR上bmo-miR-7的两个靶位点。构建了含有Bmyan基因3′-UTR和荧光素酶报告基因的转染载体,将该载体与bmo-miR-7的mimics序列共转染到家蚕胚胎细胞系BmE中,通过测定荧光素酶的活性,证明了Bmyan基因是bmo-miR-7的靶基因。本研究为进一步揭示bmo-miR-7和Bmyan在家蚕体内的生物学功能奠定了基础。     

黄绿蜜环菌菌丝体多糖分离纯化与含量测定

分离纯化黄绿蜜环菌菌丝体粗多糖,提高多糖含量,以进一步应用于工业化生产。采用DEAE-52纤维素层析柱分离纯化黄绿蜜环菌菌丝体多糖,依次用水、0.1 mol/L Na Cl、0.2 mol/L Na Cl、0.4 mol/L Na Cl、0.8 mol/L Na Cl进行洗脱;苯酚-硫酸法测定纯化后多糖含量,测定波长490nm,葡萄糖浓度与吸光度的回归方程为A=6.3137X+0.2156R2=0.9909。黄绿蜜环菌菌丝体水体粗多糖经DEAE-52纤维素层析柱分离纯化后,多糖含量达到99%以上。经过中试试验验证提取及分离纯化工艺适用于工业化生产。