Middle–Late Permian tetrapods from the Rio do Rasto Formation,Southern Brazil: a biostratigraphic reassessment

Dias‐da‐Silva, S. 2011: Middle–Late Permian tetrapods from the Rio do Rasto Formation, Southern Brazil: a biostratigraphic reassessment. Lethaia, Vol. 45, pp. 109–120. The Rio do Rasto Formation (Permian of Southern Brazil) was previously regarded as Guadalupian–early Lopingian age. Three tetrapod‐based localities are known: the Serra do Cadeado area, Aceguá and Posto Queimado. The latest tetrapod‐based biostratigraphic contribution considers that the Posto Queimado and Aceguá faunas are coeval and Wordian (middle Guadalupian) in age, correlated to the Isheevo faunas from Eastern Europe and to the Tapinocephalus Assemblage Zone of South Africa; whereas the Serra do Cadeado fauna is Capitanian (late Guadalupian), correlated to the Kotelnich fauna of Eastern Europe and, from bottom to top, to upper Pristerognathus, Tropidostoma and lower Cistecephalus assemblage zones of South Africa. A re‐evaluation of the tetrapods from the Rio do Rasto Formation and new fossil discoveries in the localities of Posto Queimado and Serra do Cadeado area (melosaurine and platyoposaurine temnospondyls, a basal anomodont, a dinocephalian and a basal dicynodont) supports a new tetrapod‐based biostratigraphic scheme for the Rio do Rasto Formation. Accordingly, the age of the fauna at Aceguá is late Roadian‐early Wordian, whereas the locality of Posto Queimado is late Wordian‐Capitanian. The Serra do Cadeado Area is correlated with both southernmost ones (Guadalupian) but also Wuchiapinghian (early Lopingian). □Paraná Basin, Passa Dois Group, tetrapod biostratigraphy, Western Gondwana.     

Leptomonas lactosovorans n. sp., a Lactose-Utilizing Trypanosomatid: Description and Nutritional Requirements1

Leptomonas lactosovorans n. sp. is described from the gut of the reduviid hemipteran Zelurus martinsi. It can be grown in a defined medium. The requirements for amino acids, vitamins, purine, and heme were similar to those established for Crithida fasciculata. Growth is stimulated by aeration. Generation time is longer than for any other insect trypanosomatid described; its utilization of lactose as a carbon source is a unique feature among trypanosomatids.     

Microsatellite markers for the silver arowana (Osteoglossum bicirrhosum, Osteoglossidae, Osteoglossiformes)

Osteoglossum bicirrhosum (silver arowana) is an important fish for the economy of the Amazon region, both as an ornamental fish and as a food fish. To provide tools for addressing ecological and genetic questions, we developed 19 polymorphic microsatellite markers that had between 2 and 7 alleles per locus in the 24 tested individuals. The transferability of many of the loci was confirmed for Osteoglossum ferreirai (black arowana) and Arapaima gigas, and for three African osteoglossiform species.     

Bioactive factors secreted from mesenchymal stromal cells protect the intestines from experimental colitis in a three-dimensional culture

Background aims

Although mesenchymal stromal cells (MSCs) have shown therapeutic potential in intestinal tissue repair, controversy concerning their short survival and poor biodistribution in recipient tissues still remains. Therefore, we investigated the paracrine role of MSC in three-dimensional culture of colon with experimental colitis.

河西走廊酒泉地区盐碱土壤中可培养放线菌多样性

为了探究甘肃河西走廊酒泉地区盐碱土壤中可培养放线菌种群多样性信息,采用稀释平板涂布法对采集到的4个盐碱土样进行分离培养纯化,并基于16S rRNA基因序列对分离的放线菌株进行系统发育分析。结果显示:根据菌落的表型差异从中共分离到63株放线菌菌株,它们分属于7个亚目、11个科、24个属;其中Streptomyces属为河西走廊酒泉地区盐碱土壤中可培养放线菌的优势菌群,共分离到24株,占放线菌种群总数的38.1%,并且有22株放线菌与已知菌序列的相似性低于98%,占放线菌总数量的34.9%。表明,河西走廊酒泉地区盐碱土壤中的放线菌资源丰富,类群具有多样性。     

Microsatellite loci for population and parentage analysis in the Amazon River dolphin (Inia geoffrensis de Blainville, 1817)

We developed specific primers for microsatellite DNA regions for the Amazon River dolphin or boto Inia geoffrensis, for use in population and conservation genetic studies. We also tested their transferability for two other species, Pontoporia blainvillei (sister taxon of I. geoffrensis) and Sotalia guianensis. A total of 12 microsatellite loci were polymorphic for the boto. An additional 25 microsatellite loci previously isolated from other cetacean species were also tested in the boto. The 26 polymorphic microsatellite loci indicate they will be excellent markers for studies of population structure and kinship relations of the boto.     

农杆菌介导5种中草药叶片瞬时表达的研究

农杆菌介导的瞬时基因表达因其操作简单、可重复性高和实验成本低而成为研究基因功能、生产活性蛋白的有效方法.该研究以非病毒型(载体Ⅰ)和病毒型二元载体(载体Ⅱ)及两种农杆菌(EHA105、LBA4404)为介导,通过叶片渗透法在5种中草药(甘草、黄芩、黄芪、大黄、板蓝根)叶片中进行报告基因GFP的瞬时表达,并对影响表达的因...     

《中国植被志》研编内容与规范

植被志是基于植被(或植物群落)调查资料, 全面记叙植被的外貌、物种组成、结构和功能, 以及地理分布和生境条件等特征, 并对同类植被进行归纳和总结的志书。《中国植被志》是第一部对中国植被进行全面记述的志书, 预计完成约48卷110册。在借鉴《中国植被》(1980)(简称“80方案”)植被分类基本原则的基础上,《中国植被志》将对中国植被分类系统的高级分类单位(植被型组、植被型和植被亚型)进行归纳和总结, 对中级和低级分类单位(群系组、群系、亚群系, 群丛组、群丛)进行详细描述。植被高级分类单位的描述具有概括性质, 是在中国植被分类系统中级和低级分类单位描述的基础上, 对其在全球和中国境内的地理分布、自然环境、群落外貌、植被类型及多样性、优势种或共优势种、生物多样性保育价值以及资源现状等进行概述, 并对“80方案”相关内容进行修订和拓展, 将提供对中国植被基本特征客观、准确的记述。在植被中级和低级分类单位中, 群系组描述的内容包括地理分布、自然环境、群落外貌、植被类型以及价值与保育等内容; 群系描述的主要内容包括地理分布、自然环境、生态特征、物种组成、群落结构、群丛组和群丛的分类与描述、优势种的生物学特性、生物量与生产力、植被动态与演替以及价值与保育等方面。作为植被志研编的核心内容, 群丛组和群丛的分类与描述主要基于植被调查资料, 采用数量分类方法, 根据群落结构和物种组成的差异划分出不同的植被类型, 并对其基本特征进行定量描述和归纳。其中, 群落的层片结构、特定植被分类单元的特征种或特征种组的筛选与甄别是植被类型划分的关键环节; 而群落外貌, 群落结构, 物种组成, 各类物种的生长习性、生境的偏适性等是群丛组和群丛描述与归纳的重点内容。该文提出了中国植被中级和低级分类单位的命名方案, 其特点在于植被类型的科学名称中同时体现了植被分类单元特征种或优势种的名称及其所属的高级植被分类单位(植被型组或植被型)的名称, 兼顾了植被名称的规范性与实用性。《中国植被志》的研编工作由文献整编、群落调查、数据分析与整理、文本撰写等环节组成。该文对植被样方的调查与收集, 文献收集与整编, 气候、土壤、地形等相关数据的来源及其整理方法, 植被分类方法, 植被命名, 植被分类单元描述的内容, 植被志章节编写大纲、体裁及撰写等多个规范进行了详细的阐述或示例。     

Effects of nucleotide sequence alignment on phylogeny estimation: a case study of 18S rDNAs of apicomplexa

The reconstruction of phylogenetic history is predicated on being able to accurately establish hypotheses of character homology, which involves sequence alignment for studies based on molecular sequence data. In an empirical study investigating nucleotide sequence alignment, we inferred phylogenetic trees for 43 species of the Apicomplexa and 3 of Dinozoa based on complete small-subunit rDNA sequences, using six different multiple-alignment procedures: manual alignment based on the secondary structure of the 18S rRNA molecule, and automated similarity-based alignment algorithms using the PileUp, ClustalW, TreeAlign, MALIGN, and SAM computer programs. Trees were constructed using neighboring-joining, weighted-parsimony, and maximum- likelihood methods. All of the multiple sequence alignment procedures yielded the same basic structure for the estimate of the phylogenetic relationship among the taxa, which presumably represents the underlying phylogenetic signal. However, the placement of many of the taxa was sensitive to the alignment procedure used; and the different alignments produced trees that were on average more dissimilar from each other than did the different tree-building methods used. The multiple alignments from the different procedures varied greatly in length, but aligned sequence length was not a good predictor of the similarity of the resulting phylogenetic trees. We also systematically varied the gap weights (the relative cost of inserting a new gap into a sequence or extending an already-existing gap) for the ClustalW program, and this produced alignments that were at least as different from each other as those produced by the different alignment algorithms. Furthermore, there was no combination of gap weights that produced the same tree as that from the structure alignment, in spite of the fact that many of the alignments were similar in length to the structure alignment. We also investigated the phylogenetic information content of the helical and nonhelical regions of the rDNA, and conclude that the helical regions are the most informative. We therefore conclude that many of the literature disagreements concerning the phylogeny of the Apicomplexa are probably based on differences in sequence alignment strategies rather than differences in data or tree-building methods.      

Taxonomic review of Bourguyiinae,cladistic analysis,and a new hypothesis of biogeographic relationships of the Brazilian Atlantic Rainforest (Arachnida: Opiliones,Gonyleptidae)

The subfamily Bourguyiinae Mello‐Leitão, 1923 (Gonyleptidae) is revised, and both phylogenetic and biogeographic hypotheses are proposed. Bourguyiinae is monophyletic, and is the sister group of the remainder of the Gonyleptidae species used for analysis, except for the Metasarcinae, which collectively is the sister group of Metavononoides orientalis Mello‐Leitão, 1923 (Cosmetidae). Bourguyiinae is divided into two genera: Bourguyia (six species) and Asarcus (four species). The genus‐level synonyms proposed here are as follows: Caldasius, Styloleptes, and Stylopisthos are junior synonyms of Bourguyia; Bogdana, Cnemoleptes, and Opisthoplites are junior synonyms of Asarcus. The species synonyms proposed here are as follows: Afranius amarali Mello‐Leitão, 1934 is a junior synonym of Bourguyia albiornata Mello‐Leitão, 1923 ; Drastus hamatus Roewer, 1943 and Styloleptes conspersus Piza, 1943 are junior synonyms of Bourguyia trochanteralis Roewer, 1930 ; Asarcus corallipes Simon, 1879 , Asarcus lutescens Sørensen, 1884 , Asarcus pallidus Mello‐Leitão, 1923 , and Opisthoplites ypsilon Sørensen, 1884 are junior synonyms of Asarcus longipes Kollar in Koch, 1839 ; Asarcus nigriconspersus Soares & Soares, 1945 is a junior synonym of Asarcus ingenuus Melo‐Leitão, 1940. New species described are: Bourguyia bocaina sp. nov. (Serra da Bocaina, São José do Barreiro, São Paulo), Bourguyia vinosa sp. nov. (E.B. Boracéia, Salesópolis, São Paulo), and Asarcus putunaberaba sp. nov. (Parque Nacional do Caparaó, Alto Caparaó, Minas Gerais). Bourguyiinae is endemic to the Atlantic Rainforest in the Brazilian states of Minas Gerais, Rio de Janeiro, São Paulo, and Paraná. Based on the modified data matrix of Pinto‐da‐Rocha et al., we propose a new biogeographical hypothesis for the Atlantic Rainforest. We suggest that Bourguyiinae species were originally distributed from the coastal region of Paraná to the north of Rio de Janeiro and south‐east of Minas Gerais, with subsequent dispersals both to northern and southern areas. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 319–362.