Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases <Emphasis Type="Italic">in silico</Emphasis> docked to different inhibitors

Background  

Enzymes belonging to the same super family of proteins in general operate on variety of substrates and are inhibited by wide selection of inhibitors. In this work our main objective was to expand the scope of studies that consider only the catalytic and binding pocket amino acids while analyzing enzyme specificity and instead, include a wider category which we have named the Interface Forming Residues (IFR). We were motivated to identify those amino acids with decreased accessibility to solvent after docking of different types of inhibitors to sub classes of serine proteases and then create a table (matrix) of all amino acid positions at the interface as well as their respective occupancies. Our goal is to establish a platform for analysis of the relationship between IFR characteristics and binding properties/specificity for bi-molecular complexes.     

Heat tolerance may determine activity time in coprophagic beetle species (Coleoptera: Scarabaeidae)

Although reports have documented loss of species diversity and ecological services caused by stressful temperature changes that result from climate change, some species cope through behavioral compensation. As temperatures and magnitudes of temperature extremes increase, animals should compensate to maintain fitness (such as through temporary behavioral shifts in activity times). Appropriate timing of activity helps avoid competition across species. Although coprophagic dung beetles exhibit species-specific temporal activity times, it is unknown whether temperature drives evolution of these species-specific temporal activity times. Using nine dung beetle species (three each of diurnal, crepuscular, and nocturnal species), we explored differences in heat stress tolerance measured as critical thermal maxima (CT_max; the highest temperature allowing activity) and heat knockdown time (HKDT; survival time under acute heat stress) across these species, and examined the results using a phylogenetically informed approach. Our results showed that day-active species had significantly higher CT_max (diurnal > crepuscular = nocturnal species), whereas crepuscular species had higher HKDT (crepuscular > nocturnal > diurnal species). There was no correlation between heat tolerance and body size across species with distinct temporal activity, and no significant phylogenetic constraint for activity. Species with higher CT_max did not necessarily have higher HKDT, which indicates that species may respond differently to diverse heat tolerance metrics. Acute heat tolerance for diurnal beetles indicates that this trait may constrain activity time and, under high acute temperatures with climate change, species may shift activity times in more benign environments. These results contribute to elucidate the evolution of foraging behavior and management of coprophagic beetle ecosystem services under changing environments.     

Connectivity in piping plovers: Do breeding populations have distinct winter distributions?

Resightings of uniquely marked birds from 2001 to 2008 were used to determine winter distributions of 4 breeding populations of a species at risk, the piping plover (Charadrius melodus). Although considerable overlap exists, a distinct pattern in winter distributions was evident. Birds originating from eastern Canada wintered farthest north compared to other populations. Most individuals from the United States Great Lakes were found in South Carolina and Georgia in winter, whereas birds from eastern Canada were found primarily in North Carolina. Although the great majority of birds marked in Prairie Canada were observed wintering in Texas, particularly southern Texas, breeding plovers from the United States Great Plains were more widely distributed on the gulf coast from Florida to Texas. Very few large-scale movements of individuals in winter were reported either within or between years. This study highlights the significance of geographic regions for eastern Canada, the United States Great Lakes, the United States Great Plains, and Prairie Canada populations, and demonstrates relatively high winter site fidelity. This information will help focus conservation efforts for specific breeding populations during the winter. © 2011 The Wildlife Society.     

Some factors affecting the future composition of UK compound animal feeds

Changes in the livestock compound-feed industry are outlined. It is noted that the change to least-cost formulation of diets manufactured to a strict nutritional specification has increased the economic and biological efficiency with which different types of feed have been utilised by livestock. Nevertheless, the feeding of livestock continues to depend on large quantities of raw materials which are potentially food for humans.A number of reasons are given why crop by-products and other waste materials are not fully utilised by the compound trade, although considerable efforts have been made by the industry to find economic and acceptable alternative raw materials for compound diets. In the case of BOCM Silcock, once a raw material has been successfully evaluated at the Unilever Research Laboratories at Colworth House, extensive development work is conducted at two development farms. Two different procedures are described and illustrated: (i) inclusion of the raw material in question at varying levels in a standard diet to assess effect on performance, and (ii) palatability test work, whereby a bland control-diet is partially replaced by the raw material under test, at levels appropriate to the likely commercial use of the test ingredient.However, the extent to which any waste material is eventually utilised will largely depend on its economic value, relative to the costs of competing raw materials. It appears unlikely that there will be any major availability of new cheap alternatives to cereals in the short term.     

Intravenous beta-endorphin: behavioral and physiological effects in conscious monkeys

Beta-endorphin (0.7 and 2.8 mg/kg) and morphine (0.15 and 0.60 mg/kg) were administered intravenously to rhesus monkeys responding on an operant schedule. Beta-endorphin injections resulted in dose-dependent effects which included marked, but relatively brief disruptions in behavioral responding, decreases in systolic blood pressure, and more protracted increases in heart rate. Morphine injections were followed by much longer duration decreases in response rates and systolic blood pressure, and an irregular but largely deceleratory heart rate response. On a molar basis, beta-endorphin was approximately twice as potent as morphine. It was concluded that intravenously administered beta-endorphin exerts behavioral and physiological effects in the unanesthetized primate.     

Secretory actions of vasoactive intestinal polypeptide, peptide histidine isoleucine and helodermin in rat small intestine: the effects of putative VIP antagonists upon VIP-induced ion secretion

Vasoactive intestinal polypeptide (VIP), peptide histidine isoleucine (PHI), and helodermin stimulate electrogenic anion secretion in preparations of rat jejunum stripped of muscularis propria. Concentration-response curves to exogenously applied peptides yielded EC50 values of 12 nM, 12 nM and 100 nM for VIP, PHI and helodermin respectively. These secretory responses were most probably mediated via the same receptor population given that cross-desensitisation was observed between all 3 analogues. Four putative VIP antagonists, namely, two growth hormone releasing factors (GRF); [AcTyr1, D-Phe2]GRF-(1-29)-NH2 and [AcTyr1]hGRF-(1-40)-OH as well as [4Cl-D-Phe6,Leu17]VIP and VIP-(10-28) were tested for their ability to inhibit VIP induced electrogenic ion secretion. None of the above exhibited any intrinsic agonist activity nor were they competitive antagonists, although some inhibition was observed with [AcTyr1]hGRF-(1-40)-OH and VIP-(10-28). Their use as selective VIP antagonists is therefore limited in rat jejunal mucosa.     

Sink trap: duckweed and dye attractant reduce mosquito populations

Duckweeds, such as Lemna minor Linnaeus (Alismatales: Lemnaceae), are common in aquatic habitats and have been suggested to reduce larval mosquito survivorship via mechanical and chemical effects. Furthermore, pond dyes are used increasingly in aquatic habitats to enhance their aesthetics, although they have been shown to attract mosquito oviposition. The present study examined the coupled effects of L. minor and black pond dye on the oviposition selectivity of Culex pipiens Linnaeus (Diptera: Culicidae) mosquitoes in a series of laboratory choice tests. Subsequently, using outdoor mesocosms, the combined influence of duckweed and pond dye on mosquito abundances in aquatic habitats was quantified. Mosquitoes were strongly attracted to duckweed, and oviposited significantly greater numbers of egg rafts in duckweed-treated water compared with untreated controls, even when the duckweed was ground. The presence of pond dye interacted with the duckweed and further enhanced positive selectivity towards duckweed-treated water. The presence of duckweed caused significant and sustained reductions in larval mosquito numbers, whereas the relative effects of dye were not evident. The use of floating aquatic plants such as duckweed, combined with dye, may help reduce mosquito populations via the establishment of population sinks, characterized by high rates of oviposition coupled with high levels of larval mortality.