Can predation by invasive mice drive seabird extinctions?

The house mouse, Mus musculus, is one of the most widespread and well-studied invasive mammals on islands. It was thought to pose little risk to seabirds, but video evidence from Gough Island, South Atlantic Ocean shows house mice killing chicks of two IUCN-listed seabird species. Mouse-induced mortality in 2004 was a significant cause of extremely poor breeding success for Tristan albatrosses, Diomedea dabbenena (0.27 fledglings/pair), and Atlantic petrels, Pterodroma incerta (0.33). Population models show that these levels of predation are sufficient to cause population decreases. Unlike many other islands, mice are the only introduced mammals on Gough Island. However, restoration programmes to eradicate rats and other introduced mammals from islands are increasing the number of islands where mice are the sole alien mammals. If these mouse populations are released from the ecological effects of predators and competitors, they too may become predatory on seabird chicks.     

Rate of decline of the Oriental white-backed vulture population in India estimated from a survey of diclofenac residues in carcasses of ungulates

The non-steroidal anti-inflammatory drug diclofenac is a major cause of the rapid declines in the Indian subcontinent of three species of vultures endemic to South Asia. The drug causes kidney failure and death in vultures. Exposure probably arises through vultures feeding on carcasses of domesticated ungulates treated with the drug. However, before the study reported here, it had not been established from field surveys of ungulate carcasses that a sufficient proportion was contaminated to cause the observed declines. We surveyed diclofenac concentrations in samples of liver from carcasses of domesticated ungulates in India in 2004-2005. We estimated the concentration of diclofenac in tissues available to vultures, relative to that in liver, and the proportion of vultures killed after feeding on a carcass with a known level of contamination. We assessed the impact of this mortality on vulture population trend with a population model. We expected levels of diclofenac found in ungulate carcasses in 2004-2005 to cause oriental white-backed vulture population declines of 80-99% per year, depending upon the assumptions used in the model. This compares with an observed rate of decline, from road transect counts, of 48% per year in 2000-2003. The precision of the estimate based upon carcass surveys is low and the two types of estimate were not significantly different. Our analyses indicate that the level of diclofenac contamination found in carcasses of domesticated ungulates in 2004-2005 was sufficient to account for the observed rapid decline of the oriental white-backed vulture in India. The methods we describe could be used again to assess changes in the effect on vulture population trend of diclofenac and similar drugs. In this way, the effectiveness of the recent ban in India on the manufacture and importation of diclofenac for veterinary use could be monitored.     

Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs

Background

In previous studies on an Iberian x Landrace cross, we have provided evidence that supported the porcine ELOVL6 gene as the major causative gene of the QTL on pig chromosome 8 for palmitic and palmitoleic acid contents in muscle and backfat. The single nucleotide polymorphism (SNP) ELOVL6:c.-533C > T located in the promoter region of ELOVL6 was found to be highly associated with ELOVL6 expression and, accordingly, with the percentages of palmitic and palmitoleic acids in longissimus dorsi and adipose tissue. The main goal of the current work was to further study the role of ELOVL6 on these traits by analyzing the regulation of the expression of ELOVL6 and the implication of ELOVL6 polymorphisms on meat quality traits in pigs.

Results

High-throughput sequencing of BAC clones that contain the porcine ELOVL6 gene coupled to RNAseq data re-analysis showed that two isoforms of this gene are expressed in liver and adipose tissue and that they differ in number of exons and 3’UTR length. Although several SNPs in the 3’UTR of ELOVL6 were associated with palmitic and palmitoleic acid contents, this association was lower than that previously observed with SNP ELOVL6:c.-533C > T. This SNP is in full linkage disequilibrium with SNP ELOVL6:c.-394G > A that was identified in the binding site for estrogen receptor alpha (ERα). Interestingly, the ELOVL6:c.-394G allele is associated with an increase in methylation levels of the ELOVL6 promoter and with a decrease of ELOVL6 expression. Therefore, ERα is clearly a good candidate to explain the regulation of ELOVL6 expression through dynamic epigenetic changes in the binding site of known regulators of ELOVL6 gene, such as SREBF1 and SP1.

Conclusions

Our results strongly suggest the ELOVL6:c.-394G > A polymorphism as the causal mutation for the QTL on pig chromosome 8 that affects fatty acid composition in pigs.

Electronic supplementary material

The online version of this article (doi:10.1186/s12711-015-0111-y) contains supplementary material, which is available to authorized users.     

Combined impacts of warming and salinisation on trophic interactions and mortality of a specialist ephemeral wetland predator

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Chick mortality leads to male‐biased sex ratios in endangered Great Lakes Piping Plovers

Few investigators have studied the offspring sex ratios of monomorphic shorebirds because visually determining the sex of juveniles is not possible. We investigated the ontogeny of an observed male‐biased adult sex ratio in the federally endangered Great Lakes population of Piping Plovers (Charadrius melodus). We determined sex ratios at hatching, banding ( = 9.0 d old), and fledging (23 d old) to determine if the bias arises during the pre‐fledging period and, if so, at what stage. For three consecutive years (2012–2014), we used a molecular technique to determine the sex of 307 chicks and followed individuals to a stage where survival to fledging could be inferred. Within fully‐sexed broods at hatching, the average proportions of male chicks (2012–2014) were 0.47, 0.58, and 0.54, respectively. At banding, the sex ratio remained unbiased in 2012 (0.51), but was male‐biased in 2013 (0.59) and 2014 (0.57). Overall, the sex ratio did not differ significantly from parity at fledging in 2012, but did differ during 2013 (P = 0.01) and 2014 (P = 0.03). Using logistic regression models fit using Bayesian inference, we found strong support for a sex effect on chick survival to fledging age, with higher male than female survival (μ_male = 0.83 [95% credible interval: 0.75–0.90]; μ_female = 0.71 [0.61–0.80]). These results suggest that the male‐biased adult sex ratio in Piping Plovers arises, in part, due to differential survival during the pre‐fledging period. This difference did not result from female chicks hatching later in the season or weighing less at banding than male chicks, factors that could potentially affect the likelihood of survival. Future investigations into possible behavioral‐ or weather‐related influences on sex‐specific survival are needed. Our results have important implications for (1) identifying management efforts needed to increase recruitment given female‐biased chick mortality, and (2) conducting population viability analyses, which frequently assume an unbiased fledgling sex ratio.     

Identification of structural DNA variations in human cell cultures after long-term passage

Random amplified polymorphic DNA (RAPD) analysis was adapted for genomic identification of cell cultures and evaluation of DNA stability in cells of different origin at different culture passages. DNA stability was observed in cultures after no more than 5 passages. Adipose-derived stromal cells demonstrated increased DNA instability. RAPD fragments from different cell lines after different number of passages were cloned and sequenced. The chromosomal localization of these fragments was identified and single-nucleotide variations in RAPD fragments isolated from cell lines after 8–12 passages were revealed. Some of them had permanent localization, while most variations demonstrated random distribution and can be considered as de novo mutations.     

Heat tolerance may determine activity time in coprophagic beetle species (Coleoptera: Scarabaeidae)

Although reports have documented loss of species diversity and ecological services caused by stressful temperature changes that result from climate change, some species cope through behavioral compensation. As temperatures and magnitudes of temperature extremes increase, animals should compensate to maintain fitness (such as through temporary behavioral shifts in activity times). Appropriate timing of activity helps avoid competition across species. Although coprophagic dung beetles exhibit species-specific temporal activity times, it is unknown whether temperature drives evolution of these species-specific temporal activity times. Using nine dung beetle species (three each of diurnal, crepuscular, and nocturnal species), we explored differences in heat stress tolerance measured as critical thermal maxima (CT_max; the highest temperature allowing activity) and heat knockdown time (HKDT; survival time under acute heat stress) across these species, and examined the results using a phylogenetically informed approach. Our results showed that day-active species had significantly higher CT_max (diurnal > crepuscular = nocturnal species), whereas crepuscular species had higher HKDT (crepuscular > nocturnal > diurnal species). There was no correlation between heat tolerance and body size across species with distinct temporal activity, and no significant phylogenetic constraint for activity. Species with higher CT_max did not necessarily have higher HKDT, which indicates that species may respond differently to diverse heat tolerance metrics. Acute heat tolerance for diurnal beetles indicates that this trait may constrain activity time and, under high acute temperatures with climate change, species may shift activity times in more benign environments. These results contribute to elucidate the evolution of foraging behavior and management of coprophagic beetle ecosystem services under changing environments.     

Space use by Great Lakes Piping Plovers during the breeding season

ABSTRACT.   Identifying and protecting breeding habitat for imperiled species requires an understanding of the spatial and temporal movements of breeding individuals. During the 2003 and 2004 breeding seasons, we examined space use by Piping Plovers ( Charadrius melodus ) in the federally endangered Great Lakes population. We used coordinate geometry to estimate home range sizes of individual birds and examined relationships between home range size and breeding stage (incubation versus chick rearing), year, sex, number of locations, minimum plover age, distance to the nearest nest, and human beach use (high, medium, or low). The mean size of home ranges of Piping Plovers that fledged at least one chick was 2.9 ± 0.5 (SE) ha (range = 0.4–11.2 ha), and the mean linear beach distance traversed was 475 ± 53 m (range = 130–1435 m). Individuals used 3 times more beach area and 1.5 times more shoreline distance in 2003 than in 2004. Females used smaller areas than males overall and during chick rearing. Home ranges were smallest on beaches with low public use, suggesting that human disturbance may cause greater movement by individual plovers and that larger protected areas may be warranted on beaches frequented by the public to minimize disturbance to breeding birds. Our results demonstrate that nesting Great Lakes Piping Plovers occupy relatively small ranges and, therefore, that even relatively small areas of suitable habitat can have a high conservation value for this endangered population. However, the total area of habitat used varied substantially among individuals, and this should be considered when protecting habitat for the species.     

Lack of prey switching and strong preference for mosquito prey by a temporary pond specialist predator

1. The strengths of trophic interactions within ecosystems can be mediated by complex mechanisms that require elucidation if researchers are to understand and predict population- and community-level stabilities. Where multiple prey types co-occur, prey switching (i.e. frequency-dependent predation) by predators may facilitate low-density prey refuge effects which promote coexistence. On the other hand, lack of switching and strong preferences by predators can strongly suppress prey populations, which is especially important considering vector species such as mosquitoes. 2. The present study quantifies prey switching and preference patterns of the temporary pond specialist copepod Lovenula raynerae towards larvae of the medically important Culex pipiens mosquito complex in the presence of different proportions of alternative Daphnia pulex prey. Further, it examines whether prey switching and preferences are contingent on the sex of the predator. 3. Lovenula raynerae exhibited a lack of prey switching and strong preference for larval mosquito prey overall, irrespective of predator sex. Also, when larval mosquitoes were available in higher proportions over daphniids, the strength of this positive selectivity increased. There was very little low-density refuge for mosquitoes where they were rare. 4. Lack of prey switching and strong preferences towards mosquitoes by predatory paradiaptomid copepods may enhance population-level regulation of disease vector mosquitoes that exploit temporary pond-style habitats. Accordingly, the conservation and promotion of these predators might enable better management of medically important species across landscapes.