Pathway of oxidative folding of secretory leucocyte protease inhibitor: an 8-disulfide protein exhibits a unique mechanism of folding

Secretory leucocyte protease inhibitor (SLPI) is a 107-amino acid protein with a high density of disulfide pairing (eight). The mechanism of oxidative folding of reduced and denatured SLPI has been investigated here. Despite an exceedingly large number of possible folding intermediates ( approximately 46 million disulfide isomers) and their potential to complicate the refolding process, oxidative folding of SLPI turns out to be surprisingly simple and efficient. Complete oxidative folding and a near-quantitative recovery of the native SLPI can be achieved in a simple buffer solution using air oxidation without any supplementing thiol catalyst or redox agent, a phenomenon that has not yet been observed with other disulfide proteins. Because of the heterogeneity and extensive overlapping of folding intermediates, identification of the predominant intermediate was unfeasible. Nonetheless, studies of reductive unfolding of native SLPI and oxidative folding of a six-disulfide variant of SLPI enable us to propose an underlying mechanism accounting for the unique folding efficiency of SLPI in the absence of a redox agent. Our studies indicate that oxidative folding of SLPI undergoes heterogeneous populations of one-, two-, three-, four-, five-, six-, and seven-disulfide isomers, including two nativelike isomers, SLPI-6A and SLPI-7A, as transient intermediates. Formation of the last two native disulfide bonds leading to the conversion of SLPI-6A --> SLPI-7A --> N-SLPI is relatively slow and represents the final stage of oxidative folding. Most importantly, free cysteines of SLPI-6A and SLPI-7A also act as a thiol catalyst in promoting the disulfide shuffling of diverse non-native intermediates accumulated along the folding pathway. This explains why a near-quantitative recovery of N-SLPI can be achieved in the absence of any thiol catalyst and redox agent. Properties of SLPI-6A and SLPI-7A were investigated and compared to those of other documented kinetic intermediates of oxidative folding. The correlation between the mechanism of SLPI folding and the three-dimensional structure of SLPI is also elaborated.     

Biomining with bacteriophage: selectivity of displayed peptides for naturally occurring sphalerite and chalcopyrite

During mineral processing, concentrates of sulfide minerals of economic interest are formed by froth flotation of fine ore particles. The method works well but recovery and selectivity can be poor for ores with complex mineralogy. There is considerable interest in methods that improve the selectivity of this process while avoiding the high costs of using flotation chemicals. Here we show the first application of phage biotechnology to the processing of economically important minerals in ore slurries. A random heptapeptide library was screened for peptide sequences that bind selectively to the minerals sphalerite (ZnS) and chalcopyrite (CuFeS2). After several rounds of enrichment, cloned phage containing the surface peptide loops KPLLMGS and QPKGPKQ bound specifically to sphalerite. Phage containing the peptide loop TPTTYKV bound to both sphalerite and chalcopyrite. By using an enzyme-linked immunosorbant assay (ELISA), the phage was characterized as strong binders compared to wild-type phage. Specificity of binding was confirmed by immunochemical visualization of phage bound to mineral particles but not to silica (a waste mineral) or pyrite. The current study focused primarily on the isolation of ZnS-specific phage that could be utilized in the separation of sphalerite from silica. At mining sites where sphalerite and chalcopyrite are not found together in natural ores, the separation of sphalerite from silica would be an appropriate enrichment step. At mining sites where sphalerite and chalcopyrite do occur together, more specific phage would be required. This bacteriophage has the potential to be used in a more selective method of mineral separation and to be the basis for advanced methods of mineral processing.     

Spontaneous pathology of the common marmoset (Callithrix jacchus) and tamarins (Saguinus oedipus, Saguinus mystax)

Background  Marmosets and tamarins are increasingly used in research, but their pathology remains poorly defined compared with Old World primates.

Methods  Necropsy records of 129 marmosets and 52 tamarins were reviewed; none was used experimentally.

Results  The most common marmoset lesions were dehydration, emaciation, nephritis, colitis, and inanition. The most common tamarin lesions were dehydration, ascites, emaciation, and congestive heart failure. Colitis and heart disease were the most common cause of death in marmosets and tamarins, respectively. Immature marmoset and tamarin deaths often occurred within the first month of life. Immature marmosets usually died from inanition, stillbirth, and colitis; immature tamarins from atelectasis, stillbirth, heart failure, and colitis. Lymphoma was the most common neoplasm for both marmosets and tamarins.

Conclusion  The findings were similar to prior reports with differences in frequency and severity. We report the first case of endometriosis in a marmoset.     

Spontaneous squamous cell carcinomas in 13 baboons,a first report in a spider monkey,and a review of the non‐human primate literature

Abstract Background Squamous cell carcinoma (SCC) is a neoplastic proliferation of epithelial cells undergoing squamous differentiation and represents a diagnostic challenge in non‐human primates (NHP), especially in baboons with perineal SCC. Methods Fourteen SCC (13 baboons, 1 spider monkey) were identified over a 20‐year period. A literature search identified 86 additional published cases of spontaneous NHP SCC. Results Squamous cell carcinoma was most commonly reported in macaques, baboons, marmosets, and squirrel monkeys. Metastasis occurred in 23%, of NHP. The most frequently reported primary locations were the oral cavity, integument, esophagus, and cervix‐uterus. Perineal SCC occurred mainly in baboons. All reported SCC in marmosets occurred in the head. Nasal cavity SCC was only reported in male marmosets. All reported pulmonary SCC occurred in males, mostly in tree shrews. Conclusions Squamous cell carcinoma is a common neoplasm in NHP and exhibits species differences. NHPs may provide a useful SCC animal model.     

Fatal acute Chagas disease in a chimpanzee

Background  Chagas disease (CD) or American trypanosomiasis is caused by a hemoflagellate protozoan, Trypanosoma cruzi . This organism has been isolated from more than 100 mammalian species and several insect vectors demonstrating a wide host distribution and low host specificity.
Methods  A 23-year-old male chimpanzee died acutely and a complete necropsy was performed to evaluate gross and microscopic pathologic changes. After observation of trypanosomal amastigotes in the myocardium, PCR and immunohistochemistry was employed to confirm the diagnosis of T. cruzi .
Results  Gross findings were consistent with mild congestive heart failure. Microscopic findings included multifocal myocardial necrosis associated with severe lymphocytic to mixed inflammatory infiltrates, edema, and mild chronic interstitial fibrosis. Multifocal intracytoplasmic amastigotes morphologically consistent with T. cruzi were observed in cardiac myofibers. Trypanosoma cruzi was confirmed by PCR and immunohistochemistry .
Conclusion  We report, to the best of our knowledge, the first fatal spontaneous case of T. cruzi infection in a chimpanzee.     

High leaf tissue density grassland species consistently more abundant across topographic and disturbance contrasts in a North American tallgrass prairie

Understanding the coupling between plant functional traits and abundance provides insight into the often hidden forces that structure plant communities. To better understand the coupling between leaf traits and abundance of grassland species in a mesic North American grassland, we measured specific leaf area (SLA) and its two components, tissue density and thickness for 125 grassland species. Plants with high tissue density were more abundant over a 17-year period across a range of environments: uplands, grazed and ungrazed watersheds, and frequently and infrequently burned watersheds. The consistent relationships between leaf tissue density and abundance across ecological contrasts imply that belowground resource availability constrains community composition independent of grazing and burning regimes. Leaf tissue density did not explain species abundance in lowlands, where belowground resources are the highest. Neither did it explain the differential abundance of species between grazing or fire frequency contrasts, suggesting that changes in burning or grazing select for species based on other traits. Relative to leaf tissue density, SLA was a poor predictor of abundance, reinforcing a long-observed—but often ignored—call that measurements of SLA need to be coupled with thickness measurements in order to effectively predict the performance of species. More generally, future research needs to investigate which belowground resources control community composition in the grassland and whether the importance of water or nutrients change with burning and grazing.     

Impact of potassium nutrition on postharvest fruit quality: Melon (Cucumis melo L) case study

Among the many plant mineral nutrients, potassium (K) stands out as a cation having the strongest influence on quality attributes that determine fruit marketability, consumer preference, and the concentration of critically important human-health associated phytonutrients. However, many plant, soil, and environmental factors often limit adequate uptake of K from the soil in sufficient amounts to satisfy fruit K requirements during development to optimize the aforementioned quality attributes. The objectives of this review are 1) to summarize published study abstracts on the effects of soil and/or foliar K fertilization as well as diverse K forms, on fruit phytonutrient concentrations; and 2) to illustrate the important role of K forms on fruit quality with a case study of Cucumis melo L (muskmelon) fruit produced with optimal soil applied K . The muskmelon studies will compare commercial sources (forms) of K applied to examine seasonal effects (spring vs. autumn) and the number of foliar K applications during fruit development on fruit marketability (maturity, yield, firmness, soluble solids, sugars, relative sweetness), consumer preference attributes (sugar content, sweetness, texture), and phytochemical concentrations (K, ascorbic acid, and β-carotene concentrations). Numerous studies have consistently demonstrated that specific K fertilizer forms, in combination with specific application regimes, can improve fruit quality attributes. Potassium fertilizer forms in order of effectiveness (Glycine (Gly)-complexed K?=?K₂SO₄?≥?KCl?>?no K?>?KNO₃) when applied wet (foliar or hydroponic) vs. dry (soil) were generally superior in improving fruit marketability attributes, along with many human-health nutrients. The muskmelon case study demonstrated that two K forms: Gly-complexed K and K₂SO₄, combined with a silicone-based surfactant, applied weekly, as a foliar spray, during fruit development, from both autumn and spring-grown plants, had the greatest impact on improving fruit marketability attributes (maturity, yield, firmness, and sugars), as well as fruit quality attributes (human-health bioactive compounds K, ascorbic acid, and β-carotene). Among several foliar applied K salts studied under field conditions so far, salts with relatively low salt indices appeared to have the greatest impacts on fruit quality when applied during the mid- to late-season fruit development periods.     

Host utilization of field-caged native and introduced thistle species by Rhinocyllus conicus

Rhinocyllus conicus Fr?elich was introduced from Europe into North America as a biological control agent of the exotic weed Carduus nutans L. Concern exists over the feeding of this weevil on at least 25 species of native Cirsium thistles. Beginning in 2008, cage studies isolating adults of R. conicus on buds and flower heads of all eight thistle species (native and introduced) recorded from Tennessee were conducted to test if R. conicus could use these species for reproduction and what impacts larval feeding of R. conicus may have on seed production. Larvae of R. conicus completed development in heads of the native species C. carolinianum (Walter) Fernald and Schubert. and C. horridulum Michaux, and significant reductions in seed numbers of both species occurred during 2008. Rhinocyllus conicus oviposited on both C. carolinianum and C. horridulum at significantly greater levels than the introduced species C. arvense (L.) Scopoli and C. vulgare (Savi) Tenore. Infested heads of C. carolinianum contained numbers of R. conicus per centimeter of plant head width similar to Ca. nutans in 2008, and both native species contained numbers of R. conicus per centimeter of plant head width similar to C. arvense and C. vulgare in 2009. Body length was similar between R. conicus reared on native thistles and its target host Ca. nutans. This report is the first documentation of R. conicus feeding and reproducing on C. carolinianum and C. horridulum. Although R. conicus has been observed only on introduced thistles in naturally occurring populations in this region, the utilization of C. carolinianum and C. horridulum as host species in controlled conditions warrants continued monitoring of field populations and further investigation into factors that may influence nontarget feeding in the future.