Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae

Industrial biotechnology employs the controlled use of microorganisms for the production of synthetic chemicals or simple biomass that can further be used in a diverse array of applications that span the pharmaceutical, chemical and nutraceutical industries. Recent advances in metagenomics and in the incorporation of entire biosynthetic pathways into Saccharomyces cerevisiae have greatly expanded both the fitness and the repertoire of biochemicals that can be synthesized from this popular microorganism. Further, the availability of the S. cerevisiae entire genome sequence allows the application of systems biology approaches for improving its enormous biosynthetic potential. In this review, we will describe some of the efforts on using S. cerevisiae as a cell factory for the biosynthesis of high-value natural products that belong to the families of isoprenoids, flavonoids and long chain polyunsaturated fatty acids. As natural products are increasingly becoming the center of attention of the pharmaceutical and nutraceutical industries, the use of S. cerevisiae for their production is only expected to expand in the future, further allowing the biosynthesis of novel molecular structures with unique properties.     

Classification,composition, richness and diversity of British hedgerows

Abstract. A floristic classification of British hedgerows is constructed. Hedges (the woody, structural element) and hedge‐bottoms (the mainly herbaceous ground flora) were analysed separately because different natural and management processes were expected to affect them. The 11 hedge classes varied in size from five to over 500 plots. Over two‐thirds of all hedges were dominated by Crataegus spp. or Primus spinosa. Hedge‐bottoms were more evenly grouped into four classes whose species composition could be related to broad land use/habitat types: intensive arable, rotational/mixed farming, managed grasslands, and woodland. The woodland class was only 12% of the total, and species characteristic of true woodland habitats were uncommon even within that class, so our data do not support the hypothesis of hedgerows acting as‘woodland corridors’for plants. Richness/diversity scores differed markedly between different hedge and hedge‐bottom classes. The richest hedgerows, both in species and inferred habitats, were among the rarer types, while the most common classes (both hedge and hedge‐bottom) were consistently the poorest. Comparison of species composition and diversity in hedges and hedge‐bottoms, and associations between them, all supported the hypothesis that the relative importance of historical, management and ecological effects differed between the two parts of the hedgerow; hedges and hedge‐bottoms should be treated ecologically as largely independent units. The classifications and richness/diversity scores enable easy preliminary assessment of the conservation value of a hedgerow. They also enable individual hedgerows to be placed in a wider (national) context.     

Microbial Exposure Assessment of Waterborne Pathogens

The large number of waterborne illnesses in Ireland and worldwide has highlighted the need to enhance strategies that minimize human exposure to pathogens in drinking water supplies. Waterborne pathogens of public concern together with relevant national and international legislation are reviewed in this study. Cryptosporidium species and pathogenic Escherichia coli are among pathogens of primary concern. The organisms originate from the gastrointestinal tract of animals and humans. They may be associated with persistent contamination of water sources, survive for long periods in the environment, and, in particular in the case of Cryptosporidium species, may survive in chlorinated water supplies. Prevention of waterborne infection should emphasize source protection in addition to water treatment. Risk assessment models can play an important role in protecting natural water systems from contamination with these pathogens. Qualitative approaches can provide an effective means of assessing risks with minimum resources and limited data; however, they lack the precision and predictive ability of fully quantitative approaches. Thirteen quantitative simulation models that could potentially be used for modeling bacterial pollutants in agricultural watersheds have been assessed in this study. No one model suits all modeling criteria. Pathogen predictions have proved variable and no model was capable of accounting for all geological and hydrological factors in addition to modeling the physical transport of bacteria in surface runoff. This assessment summarizes commonly used models and their capacity to model water pollution while also providing a good reference point for the microbial risk assessment of waterborne pathogens.     

A note on the use of metal species in microbiological tests involving growth media

The feasibility of using traditional growth media for biological testing of metal species, for example as potential microbiocides, was investigated. Significant interactions between both of the representative metal species studied, Cu2+ and FeEDTA, and the test media were found. It is recommended that the use of growth media for tests on metal species should be avoided.     

Human Risks from the Combustion of SRM-Derived Tallow in Ireland

The identification of meat and bone meal (MBM) as a significant factor in the spread of bovine spongiform encephalopathy (BSE) has resulted in the introduction of restrictions on the use and movement of MBM and tallow. This has led to a requirement for alternative uses for these products. This paper reports on a risk assessment performed on the use of tallow as a fuel oil extender in diesel engines. With up to 4000 tonnes of tallow being produced each year in Ireland, combustion with energy recovery represents a viable, cost-efficient utilization route. A stochastic (Latin Hypercube sampling) simulation model was developed to assess the infectiv-ity risk to humans associated with potential airborne exposure to the combustion products when using tallow as a combustion fuel in diesel engines. The model simulates the potential infectivity pathways that tallow follows, including its production from animals with potentially subclinical BSE and processing the tallow with segregation and heat treatments. The model uses probability distributions for the most important input parameters. The assessment takes into account a number of epidemiological parameters that include tissue infectivity, species barrier, disease incidence, and heat inactivation. Two scenarios, reflecting the infectivity risk in different animal tissues defined by the European Commissions Scientific Steering Committee (SSC), were performed. It is seen from the model results that the risk of a human contracting variant Creutzfeldt-Jakob Disease (vCJD) from potential airborne exposure to BSE, resulting from the combustion of tallow, is extremely small even when model uncertainty is taken into account (mean individual risk values ranging from 10^-11.43 to 10^-7.23 per year/person). The risks are a number of orders of magnitude less than the sporadic annual incidence level of Creutzfeldt-Jakob Disease 9CJD) in Europe (approximately 10^-6)