糖多孢红霉菌同源片段长度与染色体重组率关系的研究

为了探索同源片段长度与糖多孢红霉菌染色体同源重组率的关系,化学合成或用重叠PCR合成带有突变位点、在突变位点两侧长度为（26bp+27bp）、（500bp+576bp）和（1908bp+1749bp）的同源序列,克隆于糖多孢红霉菌同源重组载体pWHM3后,分别构建了pWHM1113、 pWHM1116和 pWHM1119质粒。以PEG介导转化糖多孢红霉菌A226原生质体,3个质粒分别获得每皿30个、69个和170个转化子,但pWHM1113质粒不能与染色体有效整合,pWHM1116质粒与染色体整合率为转化子的2%,而pWHM1119质粒与染色体整合率达到转化子的19%。 pWHM1116和 pWHM1119质粒均可进行有效的染色体二次重组,将突变位位点引入染色体。因此,同源片段长度为（500bp+576bp）或更长时,可与糖多孢红霉菌染色体进行有效的单重组和双重组。     

Genetic regulation of MUC1 expression by Helicobacter pylori in gastric cancer cells

Helicobacter pylori infection of the stomach is associated with the development of gastritis, peptic ulcers, and gastric adenocarcinomas, but the mechanisms are unknown. MUC1 is aberrantly overexpressed by more than 50% of stomach cancers, but its role in carcinogenesis remains to be defined. The current studies were undertaken to identify the genetic mechanisms regulating H. pylori-dependent MUC1 expression by gastric epithelial cells. Treatment of AGS cells with H. pylori increased MUC1 mRNA and protein levels, and augmented MUC1 gene promoter activity, compared with untreated cells. H. pylori increased binding of STAT3 and MUC1 itself to the MUC1 gene promoter within a region containing a STAT3 binding site, and decreased CpG methylation of the MUC1 promoter proximal to the STAT3 binding site, compared with untreated cells. These results suggest that H. pylori upregulates MUC1 expression in gastric cancer cells through STAT3 and CpG hypomethylation.     

Fifteen polymorphic microsatellite markers for the giant spiny frog, Paa spinosa

We characterized 15 polymorphic microsatellite loci for the giant spiny frog, Paa spinosa. These loci were highly polymorphic when screened in 38 individuals from two different populations, with nine to 23 alleles per locus. The range of observed and expected heterozygosities was 0.231-0.916 and 0.296-0.944, respectively. These polymorphic loci will be useful for assessing genetic diversity, population structure, gene flow, population assignment and determining paternity in the giant spiny frog.     

脊椎动物线粒体DNA的基因重排

将GenBank上已公布的321种脊椎动物mtDNA全序列,按纲整理归类,绘制基因排布图并进行比对。比对结果表明：81个物种的mtDNA中观察到基因重排现象,涉及脊椎动物各纲,其中9个物种同时存在基因顺序变化和基因倒置现象,所有的基因重排都涉及tRNA的变化。脊椎动物mtDNA基因顺序变化可分为3类：1)邻接的基因或片段的位置交换;2)接近于控制序列或轻链起始位点的基因或片段的位置变化,有时还伴随着控制序列的倍增;3)I-Q-M区域的变化。所有鸟类、蛇类、鳄类和有袋类的mtDNA具有各自独特的基因排列顺序。基因倒置现象常见于鱼类和哺乳类,且多表现为tRNA从轻链往重链上迁移。本文就这些基因重排现象、发生重排的机制和mtDNA基因重排在系统发生研究中的应用做一简要概述。     

The PTB domain of ShcA couples receptor activation to the cytoskeletal regulator IQGAP1

Adaptor proteins respond to stimuli and recruit downstream complexes using interactions conferred by associated protein domains and linear motifs. The ShcA adaptor contains two phosphotyrosine recognition modules responsible for binding activated receptors, resulting in the subsequent recruitment of Grb2 and activation of Ras/MAPK. However, there is evidence that Grb2‐independent signalling from ShcA has an important role in development. Using mass spectrometry, we identified the multidomain scaffold IQGAP1 as a ShcA‐interacting protein. IQGAP1 and ShcA co‐precipitate and are co‐recruited to membrane ruffles induced by activated receptors of the ErbB family, and a reduction in ShcA protein levels inhibits the formation of lamellipodia. We used NMR to characterize a direct, non‐canonical ShcA PTB domain interaction with a helical fragment from the IQGAP1 N‐terminal region that is pTyr‐independent. This interaction is mutually exclusive with binding to a more conventional PTB domain peptide ligand from PTP–PEST. ShcA‐mediated recruitment of IQGAP1 may have an important role in cytoskeletal reorganization downstream of activated receptors at the cell surface.     

模拟水流条件下初级生产力及光动力学参数

为探讨水动力作用及其他物理因子改变对湖泊初级生产力的影响 ,1999年 5月 8日～ 6月 2 4日在中国科学院太湖湖泊生态系统研究站大型生态实验槽内进行模拟水动力实验 ,分 3种水流状态 2种光强测定初级生产力及其他相关参数。分析了初级生产力、光合速率的垂直分布 ,光合速率随光强的变化 ,并借助光动力学模型拟合得到光动力学参数。结果表明 ,在静止状态下 ,当水表面光强大于 5 0 0μmol/ (m2 · s)时 ,0～ 0 .4 m处存在光抑制现象 ,最大初级生产力出现在 0 .4～ 0 .6 m,此后由于动力作用使水体悬浮物增加 ,改变了水下光照条件 ,致使最大初级生产力呈向上移动的趋势 ,出现在 0～ 0 .2 m间 ;光合速率在静止状态下随深度递减缓慢 ,而到大水流状态则递减极为迅速 ,大水流状态下的平均光合速率明显低于静止状态和小水流状态 ;基于 2种类型的光动力学模型进行非线性拟合得到的 P- I曲线相关性很好 ,2种模型模拟的结果比较接近 ,基本上能够反映太湖光合速率随光强变化的实际情况 ;在太湖这种大型浅水湖泊 ,水动力的作用使得水体中悬浮物增加 ,造成光强的迅速衰减 ,这可能会大大降低湖泊的初级生产过程     

SHIV1157ipd3N4细胞适应株的制备及其生物特性

目的体外制备SHIV1157ipd3N4病毒中国恒河猴细胞适应株,在细胞水平和中国恒河猴体内评价其生物学特性。方法用SHIV1157ipd3N4病毒阴道感染中国恒河猴,在血浆病毒载量高峰期采血分离外周血单核淋巴细胞（PBMCs）,与正常中国恒河猴PBMCs共培养。定期测定培养液中的P24抗原水平。当病毒复制达高峰期时收集培养上清,分装并冻存。测定病毒RNA载量、P24抗原浓度和TCID50。静脉感染中国恒河猴,研究该批次SHIV1157ipd3N4在体内的病毒学、免疫学指标变化及变异情况,分析其基本的生物学特性。结果本研究共制备了243 mL SHIV1157ipd3N4病毒原液,gp120序列分析表明病毒未发生变异,CCR5的嗜性也未发生改变。病毒载量为1.586×108 copies/mL,P24抗原水平为1.16×103 pg/mL,TZM-bl细胞测定病毒的TCID50为3.16×103/mL。1 mL SHIV1157ipd3N4静脉成功感染中国恒河猴G1004V,高峰期病毒载量达到1.0×106 copies/mL以上。结论此次制备的SHIV1157ipd3N4细胞适应株生物学特性稳定,适合作为毒种库构建SHIV1157ipd3N4/中国恒河猴模型。     

SHIV-XJ02170感染恒河猴后期的传代特点和env基因变异

目的研究SHIV-XJ02170在中国恒河猴感染后期传代过程中病毒和宿主的变化特点,并分析env基因的序列变异。方法将感染中国恒河猴G0401V后期（5年）的SHIV-XJ02170病毒垂直传代2只猴（G0401V→G0402V→0403V）,同时,剔除G0401V猴CD8＋T细胞使潜伏的病毒大量复制后传代1只猴（G0401V→G0404V）,应用流式细胞术、病毒载量测定、序列分析等方法研究该病毒在猴体内长期适应后的病毒和免疫学指标及序列变异特点。结果 G0401V在感染后期仍能稳定传代,且表现出毒力增强的特点。其传代猴G0402V在传代后41 d死亡,外周血CD4＋T淋巴细胞衰竭,仅为43个/mL,符合艾滋病感染猴快速进展型的特征。剔除体内CD8＋T细胞之后的传代猴G0404V的表现类似G0401V,即长期低水平的病毒血症水平。env基因序列分析发现SHIV-XJ02170在G0401V体内长期适应后发生了可遗传的序列变异,并引起糖基化位点的改变。结论 SHIV-XJ02170在猴体长期适应后的传代过程中表现出向强毒株过渡的特征,为进行SHIV-XJ02170感染性克隆的构建奠定了良好的实验基础。     

Developing a series of conservative anchor markers and their application to phylogenomics of Laurasiatherian mammals

The availability of numerous universal markers and suitable phylogenetic analysis methods are both very important for phylogenomics inference. Based on PCR amplification, a total of 122 markers, which were amplified in 19 representative species, were developed for Laurasiatherian phylogenomics. Subsequently, we illustrated the utility of these newly developed markers using a subset of eight markers. We showed that both 'supermatrix' and 'supertree' trees generated similar topology, which accorded with the current understanding of the Laurasiatherian phylogeny in most aspects. Thus, markers developed here would be likely to make a contribution to resolving evolutionary relationships and inferring evolutionary histories of the Laurasiatherian mammals in the future.