Specificity of DNA-binding by the FAX-1 and NHR-67 nuclear receptors of <Emphasis Type="Italic">Caenorhabditis elegans</Emphasis> is partially mediated via a subclass-specific P-box residue

Background  

The nuclear receptors of the NR2E class play important roles in pattern formation and nervous system development. Based on a phylogenetic analysis of DNA-binding domains, we define two conserved groups of orthologous NR2E genes: the NR2E1 subclass, which includes C. elegans nhr-67, Drosophila tailless and dissatisfaction, and vertebrate Tlx (NR2E2, NR2E4, NR2E1), and the NR2E3 subclass, which includes C. elegans fax-1 and vertebrate PNR (NR2E5, NR2E3). PNR and Tll nuclear receptors have been shown to bind the hexamer half-site AAGTCA, instead of the hexamer AGGTCA recognized by most other nuclear receptors, suggesting unique DNA-binding properties for NR2E class members.     

The potential of flow cytometry in the study of Bacillus cereus

Flow cytometry (FCM) is a rapid method allowing the acquisition of multiparametric data from thousands of individual cells within a sample. As well as measuring the intrinsic light scattering properties of cells, a plethora of fluorescent dyes may be employed to yield information on macromolecule content, surface antigens present or physiological status. Despite FCM's indispensability within other fields e.g. immunology, it is underutilized within microbiological research. In this review, a strong case is presented for the potential of FCM in the study of Gram-positive spore-former, Bacillus cereus . Previous reports where FCM was successfully used in the study of B. cereus are reviewed along with relevant studies involving other members of the genus. Under headings reflecting common research themes associated with B. cereus , specific instances where FCM has generated novel data, providing a unique insight into the organism, are discussed. Further applications are posited, based on the authors' own research with FCM and B. cereus and work extant in the broader field of microbial cytometry. The authors conclude that, while the expense of equipment and reagents is an undeniable disadvantage, FCM is a technique capable of generating significantly novel data and allows the design and execution of experiments that are not possible with any other technique.     

13C-NMR spectroscopy of acetyltyrosyl-guanidinated horse heart cytochrome c

The tyrosine residues of guanidinated horse heart cytochrome c have been specifically acetylated by reaction with N-[1-13C]acetylimidazole (90 atom%). Acetylation was monitored by 13C-NMR spectroscopy. The tyrosine residues were found to show widely varying reactivities ranging from one that is completely and exclusively acetylated at low reagent concentration (residue 67) to one that is acetylated only when the protein is unfolded (residue 97). Homogeneous derivatives were prepared containing one (either residue 67 or 97), three 48, 67 and 74), or four (residues 48, 67, 74 and 97) O-[1-13C]acetyl groups. 13C-NMR spectra of selected derivatives were obtained at pH 5.8, in the presence of cyanide ion, in the ferrous and ferric oxidation states, and after denaturation with 6M guanidine hydrochloride. The O-[1-13C]acetyltyrosyl resonances gave chemical shift values ranging from 171.8 to 176.0 ppm. These resonances were assigned to specific groups based on the known order of reactivity of the tyrosyl side chains toward N-acetylimidazole. The chemical shift of O-[1-13C]acetyltyrosyl 67 was found to be particularly sensitive to changes in protein structure. The proximity of this group to the heme makes it subject to distance-dependent paramagnetic and ring current effects. Acetylation of tyrosyl 74 gives rise to a pH-dependent equilibrium between conformers in the ferric state and a conformation change in the ferrous state. Acetylation of this residue also leads to an absorbance decrease at 695 nm that can be related to the 13C-NMR-detected conformational equilibrium. Addition of cyanide ion abolished this equilibrium.     

Investigations of pigment granule transport systems in Gonodactylus oerstedii (Crustacea: Hoplocarida: Stomatopoda)

Compound eyes of the stomatopod, Gonodactylus oerstedii, exhibit pupillary reflection responses which arise from migration of retinular cell pigment granules. In the light, reflectance from the eye increases as pigment granules accumulate around light-sensitive rhabdoms and scatter incoming light back out of the eye (pupillary closure). At dark onset, reflectance diminishes as pigment granules disperse centrifugally, enhancing photon capture by the rhabdom. We investigated the mechanisms of the pupillary response in intact animals by measuring reflectance from the eye under different temperature conditions. Lowering the temperature from 27° to 7 °C caused an increase in reflectance of infrared light in the absence of visible-light stimuli, indicating pupillary closure. When given light stimuli as temperature decreased, the eye continued to produce reflection increases which decreased in amplitude as the between stimulus reflectance level increased. All low-temperature effects were reversed when temperature was increased to normal. The rate of pupillary closure was insensitive to temperature, with a temperature quotient (Q₁₀) of 0.8 ± 0.1 s.e.m, while pupillary opening was extremely temperature sensitive (Q₁₀ of 5.4 ± 0.4). Different temperature sensitivities for pupillary opening and closing suggest that these processes involve different mechanisms.Abbreviations IOP intracelllular optical physiology - Q₁₀ temperature quotient     

Studies of primate protein variation and evolution: Microelectrophoretic detection

Genetic variation at 16 protein and enzyme loci in Cercopithecus aethiops and several other primate species has been surveyed, using cellulose acetate microelectrophoresis. Resolution of several standard variant proteins is comparable to that achieved on starch gel or polyacrylamide gel. Although both intraspecific and interspecific variation was observed for some loci, the data generally support the concept that extracellular proteins are more likely to be polymorphic within a species, while intracellular proteins generally vary between species, if at all. These methodologies are particularly appropriate for screening multiple-locus variation in large numbers of samples; their relevance to studies of molecular evolution and evaluation of theories of kin selection is discussed.This research was supported in part by California State Agricultural Experiment Station Funds to the University of California, Berkeley, and the Wenner Gren Foundation.