Leishmania amazonensis: characterization of an ouabain-insensitive Na+-ATPase activity

We characterized ouabain-insensitive Na+-ATPase activity present in the plasma membrane of Leishmania amazonensis and investigated its possible role in the growth of the parasite. An increase in Na+ concentration in the presence of 1mM ouabain, increased the ATPase activity with a V(max) of 154.1+/-13.5nmol Pi x h(-1) x mg(-1) and a K0.5 of 28.9+/-7.7mM. Furosemide and sodium orthovanadate inhibited the Na+-stimulated ATPase activity with an IC(50) of 270microM and 0.10microM, respectively. Furosemide inhibited the growth of L. amazonensis after 48h incubation, with maximal effect after 96h. The IC50 for furosemide was 840. On the other hand, ouabain (1mM) did not change the growth of the parasite. Taken together, these results show that L. amazonensis expresses a P-type, ouabain-insensitive Na+-ATPase that could be involved with the growth of the parasite.     

The zinc binding site of the Shaker channel KDC1 from Daucus carota

KDC1 is a voltage-dependent Shaker-like potassium channel subunit cloned from Daucus carota which produces conductive channels in Xenopus oocytes only when coexpressed with other plant Shaker potassium subunits, such as KAT1 from Arabidopsis thaliana. External Zn²⁺ determines a potentiation of the current mediated by the dimeric construct KDC1-KAT1, which has been ascribed to zinc binding at a site comprising three histidines located at the S3-S4 (H161, H162) and S5-S6 (H224) linkers of KDC1. Here we demonstrate that also glutamate 164, located in close proximity of the KDC1 S4 segment, is an essential component of the zinc-binding site. On the contrary, glutamate 159, located in symmetrical position with respect to E164 in the sequence E₁₅₉XHHXE₁₆₄ but more distant from the voltage sensor, does not play any role in zinc binding. The effects of Zn²⁺ can be expressed as a “shift” of the gating parameters along the voltage axis. Kinetic modeling shows that Zn²⁺ slows the closing kinetics of KDC1-KAT1 without affecting the opening kinetics. Possibly, zinc affects the movement of the voltage sensor in and out of the membrane phase through electrostatic modification of a site close to the voltage sensor.     

Modifiers of solid RNP granules control normal RNP dynamics and mRNA activity in early development

Ribonucleoproteins (RNPs) often coassemble into supramolecular bodies with regulated dynamics. The factors controlling RNP bodies and connections to RNA regulation are unclear. During Caenorhabditis elegans oogenesis, cytoplasmic RNPs can transition among diffuse, liquid, and solid states linked to mRNA regulation. Loss of CGH-1/Ddx6 RNA helicase generates solid granules that are sensitive to mRNA regulators. Here, we identified 66 modifiers of RNP solids induced by cgh-1 mutation. A majority of genes promote or suppress normal RNP body assembly, dynamics, or metabolism. Surprisingly, polyadenylation factors promote RNP coassembly in vivo, suggesting new functions of poly(A) tail regulation in RNP dynamics. Many genes carry polyglutatmine (polyQ) motifs or modulate polyQ aggregation, indicating possible connections with neurodegenerative disorders induced by CAG/polyQ expansion. Several RNP body regulators repress translation of mRNA subsets, suggesting that mRNAs are repressed by multiple mechanisms. Collectively, these findings suggest new pathways of RNP modification that control large-scale coassembly and mRNA activity during development.     

Caveolae and caveolae constituents in mechanosensing

Studies in modeled microgravity or during orbital space flights have clearly demonstrated that endothelial cell physiology is strongly affected by the reduction of gravity. Nevertheless, the molecular mechanisms by which endothelial cells may sense gravity force remain unclear. We previously hypothesized that endothelial cell caveolae could be a mechanosensing system involved in hypergravity adaptation of human endothelial cells. In this study, we analyzed the effect on the physiology of human umbilical vein endothelial cell monolayers of short exposure to modeled microgravity (24–48h) obtained by clinorotation. For this purpose, we evaluated the levels of compounds, such as nitric oxide and prostacyclin, involved in vascular tone regulation and synthesized starting from caveolae-related enzymes. Furthermore, we examined posttranslational modifications of Caveolin (Cav)-1 induced by simulated microgravity. The results we collected clearly indicated that short microgravity exposure strongly affected endothelial nitrix oxide synthase activity associated with Cav-1 (Tyr 14) phosphorylation, without modifying the angiogenic response of human umbilical vein endothelial cells. We propose here that one of the early molecular mechanisms responsible for gravity sensing of endothelium involves endothelial cell caveolae and Cav-1 phosphorylation.     

What is metamorphosis?

Metamorphosis (Gr. meta- "change" + morphe "form") as a biologicalprocess is generally attributed to a subset of animals: mostfamously insects and amphibians, but some fish and many marineinvertebrates as well. We held a symposium at the 2006 Societyfor Integrative and Comparative Biology (SICB) annual meetingin Orlando, FL (USA) to discuss metamorphosis in a comparativecontext. Specifically, we considered the possibility that theterm "metamorphosis" could be rightly applied to non-animalsas well, including fungi, flowering plants, and some marinealgae. Clearly, the answer depends upon how metamorphosis isdefined. As we participants differed (sometimes quite substantially)in how we defined the term, we decided to present each of ourconceptions of metamorphosis in 1 place, rather than attemptingto agree on a single consensus definition. Herein we have gatheredtogether our various definitions of metamorphosis, and offeran analysis that highlights some of the main similarities anddifferences among them. We present this article not only asan introduction to this symposium volume, but also as a referencetool that can be used by others interested in metamorphosis.Ultimately, we hope that this article—and the volume asa whole—will represent a springboard for further investigationsinto the surprisingly deep mechanistic similarities among independentlyevolved life cycle transitions across kingdoms.     

Non-pollinating wasps distort the sex ratio of pollinating fig wasps

In fig wasps, mating occurs among the offspring of one or a few foundress mothers within the fig, from which the mated females disperse to found new broods. Under these conditions, males will compete with each other for mating, and such local mate competition can result in female-biased sex ratios. In addition to pollinating wasps, non-pollinating wasp species are also associated with figs and develop in flower ovaries or parasitize the larvae of primary galling wasps. While studying the fig wasp Pegoscapus tonduzi , which pollinates Ficus citrifolia in Brazil, we examined the influence of non-pollinating fig wasps on the sex ratio of species that pollinate F. citrifolia to determine whether the presence of non-pollinating wasps resulted in a distorted sex ratio. There was a positive relationship between the sex ratio of P. tonduzi and the number of non-pollinating wasps that was independent of the number of foundresses and brood size. In addition, the number of non-pollinating wasps correlated negatively with the number of pollinating females, but was not significantly related to the number of pollinating males. This finding suggested that non-pollinating wasps had a direct effect in distorting the sex ratio of P. tonduzi broods. Our results indicate that the secondary sex ratio may not precisely reflect the primary sex ratio when there is a high infestation of non-pollinating fig wasps.     

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)

The internal transcribed spacers of the nuclear ribosomal RNA gene cluster, termed ITS1 and ITS2, are the most frequently used nuclear markers for phylogenetic analyses across many eukaryotic groups including most plant families. The reasons for the popularity of these markers include: 1.) Ease of amplification due to high copy number of the gene clusters, 2.) Available cost-effective methods and highly conserved primers, 3.) Rapidly evolving markers (i.e. variable between closely related species), and 4.) The assumption (and/or treatment) that these sequences are non-functional, neutrally evolving phylogenetic markers. Here, our analyses of ITS1 and ITS2 for 50 species suggest that both sequences are instead under selective constraints to preserve proper secondary structure, likely to maintain complete self-splicing functions, and thus are not neutrally-evolving phylogenetic markers. Our results indicate the majority of sequence sites are co-evolving with other positions to form proper secondary structure, which has implications for phylogenetic inference. We also found that the lowest energy state and total number of possible alternate secondary structures are highly significantly different between ITS regions and random sequences with an identical overall length and Guanine-Cytosine (GC) content. Lastly, we review recent evidence highlighting some additional problematic issues with using these regions as the sole markers for phylogenetic studies, and thus strongly recommend additional markers and cost-effective approaches for future studies to estimate phylogenetic relationships.