Timing the Eastern Asian–Eastern North American Floristic Disjunction: Molecular Clock Corroborates Paleontological Estimates

Sequence data of the chloroplast gene rbcL were used to estimate the time of the well-known eastern Asian–eastern North American floristic disjunction. Sequence divergence of rbcL was examined for 22 species of 11 genera (Campsis, Caulophyllum, Cornus, Decumaria, Liriodendron, Menispermum, Mitchella, Pachysandra, Penthorum, Podophyllum, and Phryma) representing a diverse array of flowering plants occurring disjunctly in eastern Asia and eastern North America. Divergence times of putative disjunct species pairs were estimated from synonymous substitutions, using rbcL molecular clocks calibrated for Cornus. Relative rate tests were performed to assess rate constancy of rbcL evolution among lineages. Corrections of estimates of divergence times for each species pair were made based on rate differences of rbcL between Cornus and other species pairs. Results of these analyses indicate that the time of divergence of species pairs examined ranges from 12.56 ± 4.30 million years to recent (<0.31 million years), with most within the last 10 million years (in the late Miocene and Pliocene). These results suggest that the isolation of most morphologically similar disjunct species in eastern Asia and eastern North America occurred during the global climatic cooling period that took place throughout the late Tertiary and Quaternary. This estimate is closely correlated with paleontological evidence and in agreement with the hypothesis that considers the eastern Asian–eastern North American floristic disjunction to be the result of the range restriction of a once more or less continuously distributed mixed mesophytic forest of the Northern Hemisphere that occurred during the late Tertiary and Quaternary. This implies that in most taxa the disjunction may have resulted from vicariance events. However, long-distance dispersal may explain the disjunct distribution of taxa with low divergence, such as Menispermum.     

An ethological framework for animal bioerosion trace fossils upon mineral substrates with proposal of a new class, fixichnia

Animal bioerosion trace fossils upon mineral substrates are analyzed from the point of view of the Seilacherian ethological classification. Several of the currently accepted ethological classes: cubichnia, fugichnia, repichnia, fodinichnia, agrichnia, calichnia and aedificichnia are not represented in these substrates. This fact points out a lower behavioral diversity of hard substrate trace fossils when compared with soft sediment trace fossils. Bioerosion traces can be classified in just five classes: domichnia, pascichnia, equilibrichnia, praedichnia and fixichnia. Fixichnia is here erected to gather superficial etching scars resulting from the anchoring of fixation of sessile epiliths by means of a soft or skeletal body part. Praedichnia and fixichnia are exclusive of the bioerosion realm.     

PCP degradation is mediated by closely related strains of the genus Sphingomonas

There have been numerous reports in the literature of diverse bacteria capable of degrading pentachlorophenol (PCP). In order to gain further insight into the phylogenetic relationships of PCP-degrading bacteria, we examined four strains: Arthrobacter sp. strain ATCC 33790, Flavobacterium sp. strain ATCC 39723, Pseudomonas sp. strain SR3, and Sphingomonas sp. strain RA2. These organisms were isolated from different geographical locations and all of them degrade high concentrations (100–200 mg/L) of PCP. Southern blot analyses determined that these bacteria all harbour DNA that encodes similar, if not identical, genes involved in PCP degradation. Comparison of the 16S rRNA nucleotide sequences revealed that these organisms were very closely related and, in fact, represent a monophyletic group. The 16S rRNA analyses together with fatty acid and sphingolipid analyses strongly suggest that the four strains are members of the genus Sphingomonas . The close relationship of the four organisms is supported by nucleotide sequence analysis data of the pcpB locus encoding PCP-4-monooxygenase, the first enzyme in the PCP degradative pathway.     

Two closely linked tomato HKT coding genes are positional candidates for the major tomato QTL involved in Na+/K+ homeostasis

The location of major quantitative trait loci (QTL) contributing to stem and leaf [Na⁺] and [K⁺] was previously reported in chromosome 7 using two connected populations of recombinant inbred lines (RILs) of tomato. HKT1;1 and HKT1;2, two tomato Na⁺‐selective class I‐HKT transporters, were found to be closely linked, where the maximum logarithm of odds (LOD) score for these QTLs located. When a chromosome 7 linkage map based on 278 single‐nucleotide polymorphisms (SNPs) was used, the maximum LOD score position was only 35 kb from HKT1;1 and HKT1;2. Their expression patterns and phenotypic effects were further investigated in two near‐isogenic lines (NILs): 157‐14 (double homozygote for the cheesmaniae alleles) and 157‐17 (double homozygote for the lycopersicum alleles). The expression pattern for the HKT1;1 and HKT1;2 alleles was complex, possibly because of differences in their promoter sequences. High salinity had very little effect on root dry and fresh weight and consequently on the plant dry weight of NIL 157‐14 in comparison with 157‐17. A significant difference between NILs was also found for [K⁺] and the [Na⁺]/[K⁺] ratio in leaf and stem but not for [Na⁺] arising a disagreement with the corresponding RIL population. Their association with leaf [Na⁺] and salt tolerance in tomato is also discussed.     

Enzyme regulation in C4 photosynthesis: purification, properties, and activities of thioredoxins from C4 and C3 plants

Procedures are described for the purification to homogeneity of chloroplast thioredoxins f and m from leaves of corn (Zea mays, a C4 plant) and spinach (Spinacea oleracea, a C3 plant). The C3 and C4f thioredoxins were similar immunologically and biochemically, but differed in certain of their physiochemical properties. The f thioredoxins from the two species were capable of activating both NADP-malate dehydrogenase (EC 1.1.1.37) and fructose-1,6-bisphosphatase (EC 3.1.3.11) when tested in standard thioredoxin assays. Relative to its spinach counterpart, corn thioredoxin f showed a greater molecular mass (15.0-16.0 kDa vs 10.5 kDa), lower isoelectric point (ca. 5.2 vs 6.0), and lower ability to form a stable noncovalent complex with its target fructose bisphosphatase enzyme. The C3 and C4 m thioredoxins were similar in their specificity (ability to activate NADP-malate dehydrogenase, and not fructose-1,6-bisphosphatase) and isoelectric points (ca. 4.8), but differed slightly in molecular mass (13.0 kDa for spinach vs 13.5 kDa for corn) and substantially in their immunological properties. Results obtained in conjunction with these studies demonstrated that the thioredoxin m-linked activation of NADP-malate dehydrogenase in selectively enhanced by the presence of halide ions (e.g., chloride) and by an organic solvent (e.g., 2-propanol). The results suggest that in vivo NADP-malate dehydrogenase interacts with thylakoid membranes and is regulated to a greater extent by thioredoxin m than thioredoxin f.     

外源氮输入和水分变化对荒漠草原凋落物分解的影响

全球气候变化背景下,大气氮沉降和降水变化日益显著,其对荒漠草原凋落物分解的影响存在很大的不确定性.采用裂区设计,设置主区为自然降雨、增雨30%和减雨30% 3个水分处理,副区为0(N₀)、30(N₃₀)、50(N₅₀)和100 kg·hm^-2·a^-1(N₁₀₀)4个氮素水平,经过21个月(2016年1月—2017年10月)水氮处理,研究水氮共同作用对荒漠草原常见物种猪毛菜、短花针茅和木地肤3种植物凋落物分解的影响.结果表明: 3种凋落物干物质残留率随时间增加而减少,用Olson负指数衰减模型拟合效果较好,凋落物分解系数(k)大小为猪毛菜>短花针茅>木地肤.增雨30%N₁₀₀处理分解系数最高,为0.028.单因素处理下,增雨30%和N₅₀的凋落物分解最快.水氮共同作用下,增雨 30%N₁₀₀处理凋落物分解最快.3种凋落物初始化学全氮含量大小为猪毛菜>短花针茅>木地肤,猪毛菜和短花针茅k值与全氮含量呈显著正相关;全碳含量、纤维素含量、木质素含量、C/N、木质素/N和纤维素/N大小为木地肤>短花针茅>猪毛菜,猪毛菜k值与各指标均呈显著负相关,短花针茅和木地肤k值与C/N、木质素/N和纤维素/N均呈显著负相关.猪毛菜分解最快,木地肤分解最慢.适量的水、氮添加有利于荒漠草原凋落物的分解,可以促进土壤养分循环,对荒漠草原可持续发展及生态平衡有积极作用.