Biomass change in an Atlantic tropical moist forest: the ENSO effect in permanent sample plots over a 22-year period

There are a number of controversies surrounding both biomass estimation and carbon balance in tropical forests. Here we use long-term (from 1978 through 2000) data from five 0.5-ha permanent sample plots (PSPs) within a large tract of relatively undisturbed Atlantic moist forest in southeastern Brazil to quantify the biomass increment (M_I), and change in total stand biomass (M_stand), from mortality, recruitment, and growth data for trees 10 cm diameter at breast height (DBH). Despite receiving an average of only 1,200 mm annual precipitation, total forests biomass (334.5±11.3 Mg ha^–1) was comparable to moist tropical forests with much greater precipitation. Over this relatively long-term study, forest biomass experienced rapid declines associated with El Niño events, followed by gradual biomass accumulation. Over short time intervals that overlook extreme events, these dynamics can be misinterpreted as net biomass accumulation. However for the 22 years of this study, there was a small reduction in forest biomass, averaging –1.2 Mg ha^–1 year^–1 (±3.1). Strong climatic disturbances can severely reduce forest biomass, and if the frequency and intensity of these events increases beyond historical averages, these changing disturbance regimes have the capacity to significantly reduce forest biomass, resulting in a net source of carbon to the atmosphere.     

In vivo decolourization of the polymeric dye poly R‐478 by corncob cultures of Phanerochaete chrysosporium

In this paper, the in vivo decolourization of the polymeric dye Poly R‐478 by semi‐solid‐state cultures of Phanerochaete chrysosporium BKM‐F‐1767 (ATCC 24725) was investigated, employing corncob as a support. In order to stimulate the ligninolytic system of the fungus, the cultures were supplemented with veratryl alcohol (2 mM) or manganese (IV) oxide (1 g/l). Maximum manganese‐dependent peroxidase (MnP) and lignin peroxidase (LiP) activities of around 2,000 U/l and 400 U/l were attained by the former, whereas the activities reached by the latter were of about 1,500 U/l and 200 U/l, respectively. Furthermore, laccase activity (around 150 U/l) was only detected in manganese (IV) oxide supplemented cultures. The polymeric dye Poly R‐478 (0.02 w/v) was added to three‐day‐old cultures. A percentage of biological decolourization of about 85% was achieved using cultures supplemented with veratryl alcohol, whereas MnO₂ cultures showed a rather lower percentage of around 58% after nine days of dye incubation. Moreover, a correlation between MnP activity and Poly R‐478 decolourization could be observed, indicating that this enzyme is mainly responsible for dye degradation. In the present work, the in vivo decolourizing capability of the ligninolytic complex secreted by P. chrysosporium was investigated under the above‐mentioned cultivation conditions, employing a model compound, such as the polymeric dye Poly R‐478.     

On the Firing Rate Dependency of the Phase Response Curve of Rat Purkinje Neurons In Vitro

Synchronous spiking during cerebellar tasks has been observed across Purkinje cells: however, little is known about the intrinsic cellular mechanisms responsible for its initiation, cessation and stability. The Phase Response Curve (PRC), a simple input-output characterization of single cells, can provide insights into individual and collective properties of neurons and networks, by quantifying the impact of an infinitesimal depolarizing current pulse on the time of occurrence of subsequent action potentials, while a neuron is firing tonically. Recently, the PRC theory applied to cerebellar Purkinje cells revealed that these behave as phase-independent integrators at low firing rates, and switch to a phase-dependent mode at high rates. Given the implications for computation and information processing in the cerebellum and the possible role of synchrony in the communication with its post-synaptic targets, we further explored the firing rate dependency of the PRC in Purkinje cells. We isolated key factors for the experimental estimation of the PRC and developed a closed-loop approach to reliably compute the PRC across diverse firing rates in the same cell. Our results show unambiguously that the PRC of individual Purkinje cells is firing rate dependent and that it smoothly transitions from phase independent integrator to a phase dependent mode. Using computational models we show that neither channel noise nor a realistic cell morphology are responsible for the rate dependent shift in the phase response curve.     

The effect of coastline changes on mangrove community structure,Portuguese Island,Mozambique

Changes in coastline configuration and sand movements on Portuguese Island, a small island lying close to Inhaca Island 35 km east of Maputo, Mozambique have resulted in large areas of the Island being eroded away and consequent restricted tidal recharge of the mangrove. Measurements made during 1989 show that flooding of the mangrove occurred on only three occasions. Percentage mortality of the dominant species,Ceriops tagal (Perr.) C. B. Robinson., is high. However, at the time of the study, the co-dominant,Bruguiera gymnorrhiza (L.) Lam., showed no signs of stress. Halophytic conditions are indicated by an invasive spread of salt-tolerant herbs. All species of crustaceans and molluscs have disappeared from the mangrove.Although mortality ofC. tagal is high, the regeneration status of this species is also high, comparable to that in a regularly recharged mangrove on Inhaca Island. It is suggested thatC. tagal propagules were shed under conditions when seedling establishment was favorable i.e. flooding. These seedlings may represent the last cohort which may also suffer stress and death unless tidal recharge is re-established.     

Application of latent semantic indexing to evaluate the similarity of sets of sequences without multiple alignments character-by-character

Most molecular analyses, including phylogenetic inference, are based on sequence alignments. We present an algorithm that estimates relatedness between biomolecules without the requirement of sequence alignment by using a protein frequency matrix that is reduced by singular value decomposition (SVD), in a latent semantic index information retrieval system. Two databases were used: one with 832 proteins from 13 mitochondrial gene families and another composed of 1000 sequences from nine types of proteins retrieved from GenBank. Firstly, 208 sequences from the first database and 200 from the second were randomly selected and compared using edit distance between each pair of sequences and respective cosines and Euclidean distances from SVD. Correlation between cosine and edit distance was -0.32 (P < 0.01) and between Euclidean distance and edit distance was +0.70 (P < 0.01). In order to check the ability of SVD in classifying sequences according to their categories, we used a sample of 202 sequences from the 13 gene families as queries (test set), and the other proteins (630) were used to generate the frequency matrix (training set). The classification algorithm applies a voting scheme based on the five most similar sequences with each query. With a 3-peptide frequency matrix, all 202 queries were correctly classified (accuracy = 100%). This algorithm is very attractive, because sequence alignments are neither generated nor required. In order to achieve results similar to those obtained with edit distance analysis, we recommend that Euclidean distance be used as a similarity measure for protein sequences in latent semantic indexing methods.     

Frequencies of ABO, MNSs, and Duffy phenotypes among blood donors and malaria patients from four Brazilian Amazon areas

We compared the serological phenotypic frequencies of ABO, MNSs, and Duffy in 417 blood donors and 309 malaria patients from four Brazilian Amazon areas. Our results suggest no correlation between ABO phenotype and malaria infection in all areas studied. We observed significant correlation between the S +s +, S +s -, and S -s + phenotypes and malaria infection in three areas. Some of the Duffy phenotypes showed significant correlation between donors and malaria patients in different areas. These data are an additional contribution to the establishment of differential host susceptibility to malaria.