Whole-genome sequences of influenza A(H3N2) viruses isolated from Brazilian patients with mild illness during the 2014 season

The influenza A(H3N2) virus has circulated worldwide for almost five decades and is the dominant subtype in most seasonal influenza epidemics, as occurred in the 2014 season in South America. In this study we evaluate five whole genome sequences of influenza A(H3N2) viruses detected in patients with mild illness collected from January-March 2014. To sequence the genomes, a new generation sequencing (NGS) protocol was performed using the Ion Torrent PGM platform. In addition to analysing the common genes, haemagglutinin, neuraminidase and matrix, our work also comprised internal genes. This was the first report of a whole genome analysis with Brazilian influenza A(H3N2) samples. Considerable amino acid variability was encountered in all gene segments, demonstrating the importance of studying the internal genes. NGS of whole genomes in this study will facilitate deeper virus characterisation, contributing to the improvement of influenza strain surveillance in Brazil.     

Effect of excess water in an oxisol on ammonium,nitrate, iron and manganese availability and nutrient uptake of two tropical forage species

Summary A glasshouse experiment was conducted to determine how reduction conditions would affect plant nutrient availability and uptake in a red-yellow latosol (Acrustox). Soil analysis showed that the most important changes were a marked increase in extractable iron and an inhibition of nitrification. The grass andropogon (Andropogon gayanus Kunth var.bisquamulatus (Hoechst) Hack) and the legume stylo (Stylosanthes capitata (Vog)) responded differently to reducing conditions.Andropogon showed low P, Ca, Mg, Fe and Mn content in the shoots but an intense coating of oxidized iron was observed on the surface of roots. Stylo plants, on the other hand, showed no iron deposition on the root surfaces but a high iron content in the shoots. No decreased P, Ca or Mg content was observed in this case. It was concluded that in water saturated soil, reduction took place and plant performance was affected not only by restricted root development but by preventing P, Ca and Mg uptake in andropogon and increasing Fe uptake in stylo plants. It is suggested that restricted P, Ca and Mg uptake by andropogen would be the result of iron deposition on root surfaces.     

The molecular organization of the beta-globin complex of the deer mouse, Peromyscus maniculatus

Recombinant DNA clones have been isolated that contain 80 kb of the beta-globin complex from the deer mouse, Peromyscus maniculatus. Comparisons of this complex with that from the laboratory mouse, Mus domesticus (with an order 5'-Hbby, Hbb-bhO, Hbb-bhl, Hbb-bh2, Hbb-bh3, Hbb-bl, Hbb-b2 3') highlight organizational trends in the beta-globin complex since the two species diverged. Unlike other mammals studied thus far, the deer mouse possesses three adult genes. Partial sequence analysis indicates that each of the three adult genes is intact and hence may be functional. Hybridization of one of the two Mus pseudogenes, Hbb-bh3, to genomic blots from Peromyscus reveals that it has a homologous counterpart in Peromyscus. Homologous genes to the two gamma-like Mus genes, Hbb-bhO and Hbb-bhl, are also found in Peromyscus. The strong hybridization between the Hbb-bhl genes and significant nucleotide similarity between the Hbb-bhO genes suggest that both pairs are important for the ontogeny of these mice although no known product has been identified for the Hbb-bhO genes. The presence of Hbb-bhO and Hbb-bhl in Peromyscus suggests that the duplication that created this related gene set occurred before the two lineages diverged. A single gene for Hbb-y has been isolated from Peromyscus. The adult region in Peromyscus has undergone significant divergence from the same region in Mus, having three rather than two adult genes, the acquisition of at least 15 kb of extra DNA relative to Mus, and possibly the loss of the Hbb-bh2 pseudogene. The nonadult region of the complex, in contrast, contains the same set of genes apparently distributed over the same amount of DNA as in the Mus beta- globin complex. This observation suggests that the embryonic region of the complex is more evolutionarily stable than the adult region.      

High productivity by Fish Eagles on a polluted dam near Harare

Mundy, P.J. & Couto, J.T. 2000. High productivity by Fish Eagles on a polluted dam near Harare. Ostrich 71 (1 & 2): 11–14.

Lake Chivero, in the Robert McIlwaine Recreational Park west of Harare, is the capital city's main reservoir of drinking water. It has been the subject of five surveys for pesticides and/or heavy metals in the period 1974–1995. The (geometric) average DDE residue level in seven Fish Eagle eggs collected in 1980 was 53 ppm dry weight. By 1995, DDT levels had considerably declined. There are now five pairs of Fish Eagles on Lake Chivero (1996), at a very low density of 14.8 km shoreline per pair. In the 14-year period, 1984–1997, 40 pair-occupations have been found and inspected, which produced 64 fledglings. One nest had fledglings in 11 years, and on three occasions broods of three were produced from it. A fourth brood of three was produced at another nest. The dam receives treated sewage effluent from the city and is now highly eutrophic; this has contributed to the eagles' breeding performance.     

Ending AIDS as a public health threat by 2030: Time to reset targets for 2025

Paul De Lay and co-authors introduce a Collection on the design of targets for ending the AIDS epidemic.     

Hyperepilithics—An overlooked life form of vascular plants on tropical vertical rock walls

Vascular epiphytes are a characteristic life form in many tropical regions and often occur growing on bare rocks. South America has the highest diversity. Here, we describe a neglected life form: hyperepilithics adapted and restricted to growing on vertical (inclination above 70°) and bare rock walls without having roots intruding the substrate. Hyperepilithics are in particular present on Brazilian inselbergs and dominated by highly specialized Bromeliaceae, mainly of the genera Stigmatodon, Tillandsia and Alcantarea, whereas Orchidaceae surprisingly has a low representation. An overview of this habitat, the life form hyperepilithics and a comparison with similar paleotropical habitats (mainly inselbergs in Western/Eastern Africa and India) are provided. Attention is drawn to hyperepilithics as a most promising and not yet exploited source for a sustainable urban ‘vertical gardening’, for example in tropical megacities.