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The nuclear receptor coactivator RAC3 plays important roles in many biological processes and tumorigenesis. We found that RAC3 is over-expressed in human chronic myeloid leukemia cells K562, which are normally resistant to TRAIL-induced apoptosis. RAC3 down-regulation by siRNA rendered these cells sensitive to TRAIL-induced cell death. In addition to the up-regulation of TRAIL receptors, the process involves Bid, caspases and PARP activation, loss of mitochondrial membrane potential, and release of AIF, cytochrome c and Smac/DIABLO to the cytoplasm. We conclude that RAC3 is required for TRAIL resistance and that this anti-apoptotic function is independent of its role in hormone receptor signaling. 相似文献
13.
Hossein Fazelinia Patrick C. Cirino Costas D. Maranas 《Protein science : a publication of the Protein Society》2009,18(1):180-195
One of the many challenging tasks of protein design is the introduction of a completely new function into an existing protein scaffold. In this study, we introduce a new computational procedure OptGraft for placing a novel binding pocket onto a protein structure so as its geometry is minimally perturbed. This is accomplished by introducing a two‐level procedure where we first identify where are the most appropriate locations to graft the new binding pocket into the protein fold by minimizing the departure from a set of geometric restraints using mixed‐integer linear optimization. On identifying the suitable locations that can accommodate the new binding pocket, CHARMM energy calculations are employed to identify what mutations in the neighboring residues, if any, are needed to ensure that the minimum energy conformation of the binding pocket conserves the desired geometry. This computational framework is benchmarked against the results available in the literature for engineering a copper binding site into thioredoxin protein. Subsequently, OptGraft is used to guide the transfer of a calcium‐binding pocket from thermitase protein (PDB: 1thm) into the first domain of CD2 protein (PDB:1hng). Experimental characterization of three de novo redesigned proteins with grafted calcium‐binding centers demonstrated that they all exhibit high affinities for terbium (Kd ~ 22, 38, and 55 μM) and can selectively bind calcium over magnesium. 相似文献
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Justin Anglin Reza Beheshti Zavareh Philipp N. Sander Daniel Haldar Edouard Mullarky Lewis C. Cantley Alec C. Kimmelman Costas A. Lyssiotis Luke L. Lairson 《Bioorganic & medicinal chemistry letters》2018,28(16):2675-2678
Pancreatic ductal adenocarcinoma (PDAC) is a lethal malignancy that is extremely refractory to the therapeutic approaches that have been evaluated to date. Recently, it has been demonstrated that PDAC tumors are dependent upon a metabolic pathway involving aspartate aminotransferase 1, also known as glutamate-oxaloacetate transaminase 1 (GOT1), for the maintenance of redox homeostasis and sustained proliferation. As such, small molecule inhibitors targeting this metabolic pathway may provide a novel therapeutic approach for the treatment of this devastating disease. To this end, from a high throughput screen of ~800,000 molecules, 4-(1H-indol-4-yl)-N-phenylpiperazine-1-carboxamide was identified as an inhibitor of GOT1. Mouse pharmacokinetic studies revealed that potency, rather than inherent metabolic instability, would limit immediate cell- and rodent xenograft-based experiments aimed at validating this potential cancer metabolism-related target. Medicinal chemistry-based optimization resulted in the identification of multiple derivatives with >10-fold improvements in potency, as well as the identification of a tryptamine-based series of GOT1 inhibitors. 相似文献
17.
Costas J Carrera N Domínguez E Vilella E Martorell L Valero J Gutiérrez-Zotes A Labad A Carracedo A 《Human genetics》2009,124(6):607-613
The number and frequency of susceptibility alleles at loci associated to most psychiatric disorders is largely unknown, in
spite of its relevance for the design of studies aiming to find these alleles. Both, common polymorphisms and rare mutations
may contribute to the genetic susceptibility to complex psychiatric disorders, being the relative relevance of each type of
variation currently under debate. Here, we confirmed the existence of a common protective haplotype against schizophrenia
at the dopamine D3 receptor (DRD3) gene, by replication and pooled analysis with previous data (Mantel–Haenszel χ2
P value = 0.00227; OR = 0.79, 95% CI 0.68–0.92, based on 794 cases and 1,078 controls from three independent populations of
European origin). This protective haplotype is at very low frequency in Sub-Saharan Africans (median 0.06) and at intermediate
frequencies in other populations (median 0.25). We also revealed, by examining the patterns of linkage disequilibrium around
this gene, that the protective haplotype has reached high frequency in non-African populations due to selection acting, most
probably, on a linked functional polymorphism, the non-synonymous single nucleotide polymorphism Ser9Gly (rs6280), also at
DRD3. Thus, this finding shows that the natural selection may play a role in the existence of common alleles conferring different
susceptibility to schizophrenia.
Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users. 相似文献
18.
Makhatadze and Privalov have analyzed the thermodynamics of transfer of aliphatic and aromatic hydrocarbons from the gas phase into water. Finding that the hydration free energy of aliphatic and aromatic hydrocarbons have different signs, they conclude that the mechanism causing hydrophobicity of these solutes is of a different nature. Here, we offer an alternative analysis of the dissolution of these non-polar compounds into water based on a recently published interpretation scheme for thermodynamic transfer functions. Our analysis shows that the hydrophobicity of aromatic and aliphatic hydrocarbons is qualitatively the same, i.e. its causes are the same namely the extremely high cohesive energy of water which overcomes the favorable solute-solute and solute-water interactions. However, both analyses conclude that the experimentally observed quantitative difference between the interactions of water with aliphatic and aromatic hydrocarbons, can be assigned to the formation of aromatic ring-water H-bonds. 相似文献
19.
Lee Ho-Joon Kremer Daniel M. Sajjakulnukit Peter Zhang Li Lyssiotis Costas A. 《Metabolomics : Official journal of the Metabolomic Society》2019,15(7):1-15
Metabolomics - Exposure to ricin can be lethal and treatments that are under development have short windows of opportunity for administration after exposure. It is therefore essential to achieve... 相似文献
20.
Konstantinos P. Exarchos Themis P. Exarchos Costas Papaloukas Anastassios N. Troganis Dimitrios I. Fotiadis 《基因组蛋白质组与生物信息学报(英文版)》2009,7(3):138-142
PBOND is a web server that predicts the conformation of the peptide bond between any two amino acids. PBOND classifies the peptide bonds into one out of four classes, namely cis imide (cis-Pro), cis amide (cis-nonPro), trans imide (trans-Pro) and trans amide (trans-nonPro). Moreover, for every prediction a reliability index is computed. The underlying structure of the server consists of three stages: (1) feature extraction, (2) feature selection and (3) peptide bond clas- sification. PBOND can handle both s... 相似文献