Crystal structure of the N domain of human somatic angiotensin I-converting enzyme provides a structural basis for domain-specific inhibitor design

Human somatic angiotensin I-converting enzyme (sACE) is a key regulator of blood pressure and an important drug target for combating cardiovascular and renal disease. sACE comprises two homologous metallopeptidase domains, N and C, joined by an inter-domain linker. Both domains are capable of cleaving the two hemoregulatory peptides angiotensin I and bradykinin, but differ in their affinities for a range of other substrates and inhibitors. Previously we determined the structure of testis ACE (C domain); here we present the crystal structure of the N domain of sACE (both in the presence and absence of the antihypertensive drug lisinopril) in order to aid the understanding of how these two domains differ in specificity and function. In addition, the structure of most of the inter-domain linker allows us to propose relative domain positions for sACE that may contribute to the domain cooperativity. The structure now provides a platform for the design of "domain-specific" second-generation ACE inhibitors.     

Structural basis for antibacterial peptide self‐immunity by the bacterial ABC transporter McjD

Certain pathogenic bacteria produce and release toxic peptides to ensure either nutrient availability or evasion from the immune system. These peptides are also toxic to the producing bacteria that utilize dedicated ABC transporters to provide self‐immunity. The ABC transporter McjD exports the antibacterial peptide MccJ25 in Escherichia coli. Our previously determined McjD structure provided some mechanistic insights into antibacterial peptide efflux. In this study, we have determined its structure in a novel conformation, apo inward‐occluded and a new nucleotide‐bound state, high‐energy outward‐occluded intermediate state, with a defined ligand binding cavity. Predictive cysteine cross‐linking in E. coli membranes and PELDOR measurements along the transport cycle indicate that McjD does not undergo major conformational changes as previously proposed for multi‐drug ABC exporters. Combined with transport assays and molecular dynamics simulations, we propose a novel mechanism for toxic peptide ABC exporters that only requires the transient opening of the cavity for release of the peptide. We propose that shielding of the cavity ensures that the transporter is available to export the newly synthesized peptides, preventing toxic‐level build‐up.     

Genome Analysis of Pseudoloma neurophilia: A Microsporidian Parasite of Zebrafish (Danio rerio)

Microsporidia are highly successful parasites that infect virtually all known animal lineages, including the model Danio rerio (zebrafish). The widespread use of this aquatic model for biomedical research has resulted in an unexpected increase in infections from the microsporidium Pseudoloma neurophilia, which can lead to significant physical, behavioral, and immunological modifications, resulting in nonprotocol variation during experimental procedures. Here, we seek to obtain insights into the biology of P. neurophilia by investigating its genome content, which was obtained from only 29 nanograms of DNA using the MiSeq technology and paired‐end Illumina sequencing. We found that the genome of P. neurophilia is phylogenetically and genetically related to other fish‐microsporidians, but features unique to this intracellular parasite are also found. The small 5.25‐Mb genome assembly includes 1,139 unique open‐reading frames and an unusually high number of transposable elements for such a small genome. Investigations of intragenomic diversity also provided strong indications that the mononucleate nucleus of this species is diploid. Overall, our study provides insights into the dynamics of microsporidian genomes and a solid sequence reference to be used in future studies of host–parasite interactions using the zebrafish D. rerio and P. neurophilia as a model.     

Ventricular activation is impaired in aged rat hearts

Ventricular arrhythmias are frequently observed in the elderly population secondary to alterations of electrophysiological properties that occur with the normal aging process of the heart. However, the underlying mechanisms remain poorly understood. The aim of the present study was to determine specific age-related changes in electrophysiological properties and myocardial structure in the ventricles that can be related to a structural-functional arrhythmogenic substrate. Multiple unipolar electrograms were recorded in vivo on the anterior ventricular surface of four control and seven aged rats during normal sinus rhythm and ventricular pacing. Electrical data were related to morphometric and immunohistochemical parameters of the underlying ventricular myocardium. In aged hearts total ventricular activation time was significantly delayed (QRS duration: +69%), while ventricular conduction velocity did not change significantly compared with control hearts. Moreover, ventricular activation patterns displayed variable numbers of epicardial breakthrough points whose appearance could change with time. Morphological analysis in aged rats revealed that heart weight and myocyte transverse diameter increased significantly, scattered microfoci of interstitial fibrosis were mostly present in the ventricular subendocardium, and gap junction connexin expression decreased significantly in ventricular myocardium compared with control rats. Our results show that in aged hearts delayed total ventricular activation time and abnormal activation patterns are not due to delayed myocardial conduction and suggest the occurrence of impaired impulse propagation through the conduction system leading to uncoordinated myocardial excitation. Impaired interaction between the conduction system and ventricular myocardium might create a potential reentry substrate, contributing to a higher incidence of ventricular arrhythmias in the elderly population.     

Exhaled volatile organic compounds in patients with non-small cell lung cancer: cross sectional and nested short-term follow-up study

Background

Non-invasive diagnostic strategies aimed at identifying biomarkers of lung cancer are of great interest for early cancer detection. The aim of this study was to set up a new method for identifying and quantifying volatile organic compounds (VOCs) in exhaled air of patients with non-small cells lung cancer (NSCLC), by comparing the levels with those obtained from healthy smokers and non-smokers, and patients with chronic obstructive pulmonary disease. The VOC collection and analyses were repeated three weeks after the NSCLC patients underwent lung surgery.

Methods

The subjects'' breath was collected in a Teflon^® bulb that traps the last portion of single slow vital capacity. The 13 VOCs selected for this study were concentrated using a solid phase microextraction technique and subsequently analysed by means of gas cromatography/mass spectrometry.

Results

The levels of the selected VOCs ranged from 10^-12 M for styrene to 10^-9 M for isoprene. None of VOCs alone discriminated the study groups, and so it was not possible to identify one single chemical compound as a specific lung cancer biomarker. However, multinomial logistic regression analysis showed that VOC profile can correctly classify about 80 % of cases. Only isoprene and decane levels significantly decreased after surgery.

Conclusion

As the combination of the 13 VOCs allowed the correct classification of the cases into groups, together with conventional diagnostic approaches, VOC analysis could be used as a complementary test for the early diagnosis of lung cancer. Its possible use in the follow-up of operated patients cannot be recommended on the basis of the results of our short-term nested study.     

Imidazole-containing ternary complexes of N-benzyloxycarbonyl-aminoacids. Crystal and molecular structure of bis(N-benzyloxycarbonyl-alaninato)bis-(N-methylimidazole)copper(II) ethanol solvate

Mixed ligand complexes of the type Cu(Z-aminoacidato)₂(B₂) (Z = benzyloxycarbonyl group, Z-aminoacidate = Z-glycinate (Zgly), Z-alaninate (Zala); Z-valinate (Zval), Z-leucinate (Zleu) ion, B = imidazole (Im), N-methylimidazole (MeIm)) were synthesized and characterized by means of electronic, infrared and EPR spectroscopies. For one of them, bis(Z-alaninato)bis(N-methylimidazole)copper(II) ethanol solvate, the crystal and molecular structure was also determined by the single crystal X-ray diffraction method. The complex crystallizes in the monoclinic space group P2₁/c, with cell dimensions a = 11.1119(6), b = 18.8398(7), c = 8.9652(5) Å, β = 105.380(2)° and Z = 2. The structure was solved by conventional Patterson and Fourier methods and refined by full-matrix least-squares to an R value of 0.045. The complex has square-planar coordination via two centrosymmetric carboxylic oxygens and two N-methylimidazole nitrogens. The second carboxylate oxygen is 2.731(5) Å from the copper atom in an ‘out of plane’ position. Packing is mainly determined by hydrogen bondings between amide nitrogen and amide carboxyl oxygen. Electronic, infrared and EPR spectra are consistent with this type of coordination geometry for anhydrous complexes, while for hydrate complexes are suggestive of tetragonal bipyramidal geometry.     

Wilkes Land Late Pleistocene diatom age model: From bio-events to quantitative biostratigraphy

A new method merges conventional and quantitative biostratigraphic approaches, supported by magnetic polarity data, to develop a chronological framework for sediment core MD03-2595 retrieved on the continental rise off Wilkes Land, East Antarctica before proceeding to paleoceanographic and paleoclimatic analysis. This combined method helped to identify climatic cycles, highlight stratigraphic discontinuities and reworking, and assess regional sedimentological and diatom biostratigraphic evolution. Core MD03-2595 spans the last 0.8 Ma, from the Mid Pleistocene Transition (MPT) to the Early Holocene. A hiatus including Marine Isotope Stages (MIS) 19, 18 and 17 was identified, and a decreasing trend in sediment accumulation rates from MIS 16 to the Holocene was observed. This quantitative diatom biostratigraphic dataset, placed in its own sedimentological and paleomagnetic context, provides new information regarding the paleobiogeographic distribution and ecological responses of biostratigraphically significant diatom species, such as Thalassiosira elliptipora and T. fasciculata, for the Matuyama–Brunhes (M–B) transition, and Actinocyclus ingens, Hemidiscus karstenii and Rouxia spp. for the middle and late Pleistocene diatom biozonation.