A Spatial Framework for Understanding Population Structure and Admixture

Geographic patterns of genetic variation within modern populations, produced by complex histories of migration, can be difficult to infer and visually summarize. A general consequence of geographically limited dispersal is that samples from nearby locations tend to be more closely related than samples from distant locations, and so genetic covariance often recapitulates geographic proximity. We use genome-wide polymorphism data to build “geogenetic maps,” which, when applied to stationary populations, produces a map of the geographic positions of the populations, but with distances distorted to reflect historical rates of gene flow. In the underlying model, allele frequency covariance is a decreasing function of geogenetic distance, and nonlocal gene flow such as admixture can be identified as anomalously strong covariance over long distances. This admixture is explicitly co-estimated and depicted as arrows, from the source of admixture to the recipient, on the geogenetic map. We demonstrate the utility of this method on a circum-Tibetan sampling of the greenish warbler (Phylloscopus trochiloides), in which we find evidence for gene flow between the adjacent, terminal populations of the ring species. We also analyze a global sampling of human populations, for which we largely recover the geography of the sampling, with support for significant histories of admixture in many samples. This new tool for understanding and visualizing patterns of population structure is implemented in a Bayesian framework in the program SpaceMix.     

Neoseiulus fallacis: dispersal and biological control of Tetranychus urticae following minimal inoculations into a strawberry field

In three separate tests, 100 adult female Neoseiulus fallacis (Garman) (plus immatures) were released at five point locations across 1.6-m rows of strawberries to control twospotted spider mites, Tetranychus urticae Koch. Beginning in April, during 6–12 weeks, predators controlled pests locally and dispersed downwind by 20–30 m. Up to 100 m² around each release point was colonized, and the entire 2.5 ha field was covered by predators by September. Distances dispersed by N. fallacis were similar within and across rows, suggesting that dispersal was primarily by aerial rather than by ambulatory means. Factors that affected dispersal were temperature, wind direction, density of spider mites, and mowing and flailing of foliage. An exponential model of dispersal was fitted to the data. On average, the area dispersed by N. fallacis doubled every 70 degree-days. From these results, a strategy of minimum release is suggested. To establish N. fallacis over a field in a single season, ca. 100 adult females per 1–2 m of row can be released before 1 July, after T. urticae have achieved 2–5 female adults per leaf. Releases should be 50 m apart and to the upwind side of the field. Selective sprays may be needed to suppress spider mites until predators gain control and disperse over the field.     

Gradient analysis of reversed treelines and grasslands of the Valles Caldera,New Mexico

Objective: : Treeless meadows and parks are widespread but poorly understood features of the montane vegetation of the western USA. These communities frequently form reversed treelines where grassy valleys occur below forested slopes above. Our purpose was to assess the environmental correlates of such treelines, as well as patterns in the composition and diversity of grasslands and forest margins in the Valles Caldera National Preserve. Location: Valles Caldera National Preserve (35°50′‐36°00’ N, 106°24′‐106°37’ W, 2175–3150 m), Jemez Mountains, New Mexico, USA. Methods: We conducted a gradient analysis based on 200 nested quadrats on transects crossing reversed treelines and spanning the compositional heterogeneity of grasslands. We used cluster analysis and non‐metric multidimensional scaling to assess relationships between compositional variation and environmental variables. Results: We found strong, highly significant relationships of the vegetation to gradients in slope inclination, soil texture, moisture, nutrient availability, and nighttime minimum temperatures. Reversed treelines are most strongly associated with shifts in the thermal regime, exhibit weaker relationships with soil texture and nutrient content, and show no relationship with gravimetric soil moisture. Gradients in aspect, soil moisture, and annual mean temperature are associated with compositional variation within grasslands and forest margins. Conclusions: Lower nightly minimum temperatures and fewer consecutive frost‐free days resulting from cold‐air drainage may prevent tree seedling establishment in valley bottoms via photo‐inhibition, tissue damage, or frost heaving. Fine‐textured soils may also impede tree seedling establishment in valley bottoms. These findings lay the groundwork for experimental and physiological tests of these potential causes of these reversed treelines.     

Influence of host nutrition on the development and consequences of nematode parasitism in ruminants.

Control of gastrointestinal nematodes of ruminants is based largely on use of anthelmintics combined, where practical, with pasture management. The increasing prevalence of resistance to anthelmintics has led to the search for alternative sustainable control strategies. Here, we consider how nutrition, as a short-term alternative, can influence the host--parasite relationship in ruminants, using gastrointestinal nematode infections of sheep as the model system. Nutrition can affect the ability of the host to cope with the consequences of parasitism and to contain and eventually to overcome parasitism. It can also affect the parasite population through the intake of antiparasitic compounds.     

Polyelectrolyte complexes stabilize and controllably release vascular endothelial growth factor

Angiogenesis has long been a desired therapeutic approach to improve clinical outcomes of conditions typified by ischemia. Vascular endothelial growth factor (VEGF) has demonstrated the ability to generate new blood vessels in vivo, but trials using intravenous delivery have not yet produced clinical success. Localized, sustained delivery of VEGF has been proven necessary to generate blood vessels as demonstrated by implantable, controlled release devices. Ultimately, nanoparticles delivered by intravenous injection may be designed to accumulate in target tissues and sustain the local VEGF concentration; however, injectable nanosuspensions that control the release of stabilized VEGF must first be developed. In this study, we utilize the heparin binding domain of VEGF to bind the polyanion dextran sulfate, resulting in an enhanced thermal stability of VEGF. Coacervation of the VEGF-bound dextran sulfate with selected polycations (chitosan, polyethylenimine, or poly-L-lysine) produced nanoparticles approximately 250 nm in diameter with high VEGF encapsulation efficiency (50-85%). Release of VEGF from these formulations persisted for >10 days and maintained high VEGF activity as determined by ELISA and a mitogenic bioassay. Chitosan-dextran sulfate complexes were preferred because of their biodegradability, desirable particle size ( approximately 250 nm), entrapment efficiency ( approximately 85%), controlled release (near linear for 10 days), and mitogenic activity.     

Broad-Scale Recombination Patterns Underlying Proper Disjunction in Humans

Although recombination is essential to the successful completion of human meiosis, it remains unclear how tightly the process is regulated and over what scale. To assess the nature and stringency of constraints on human recombination, we examined crossover patterns in transmissions to viable, non-trisomic offspring, using dense genotyping data collected in a large set of pedigrees. Our analysis supports a requirement for one chiasma per chromosome rather than per arm to ensure proper disjunction, with additional chiasmata occurring in proportion to physical length. The requirement is not absolute, however, as chromosome 21 seems to be frequently transmitted properly in the absence of a chiasma in females, a finding that raises the possibility of a back-up mechanism aiding in its correct segregation. We also found a set of double crossovers in surprisingly close proximity, as expected from a second pathway that is not subject to crossover interference. These findings point to multiple mechanisms that shape the distribution of crossovers, influencing proper disjunction in humans.     

Developmental parameters and seasonal phenology of Calepitrimerus vitis (Acari: Eriophyidae) in wine grapes of western Oregon

Developmental parameters of protogyne Calepitrimerus vitis (Nalepa) (Acari: Eriophyidae) were determined at 12, 15, 17, 22, 25, 28, 31, and 34 °C to better understand seasonal activity, population growth, and ultimately more effectively manage pest mites in wine grapes. Net reproductive rate (R(o)) was greater than zero at all temperatures with the maximum R(o) (9.72) at 25 °C. The lowest estimated R(o) (0.001) occurred at 34 °C. There was a gradual decrease in mean generation time (T) as temperatures increased from 17 to 31 °C. The shortest and longest generation time was recorded at 31 °C (T = 5.5 d) and 17 °C (T = 17.5 d). Rates of natural increase were lowest at 17°C (0.035) and increased with increasing temperatures, respectively. The peak rate of natural increase value (0.141) was at 25 °C. Estimations for minimum and maximum developmental thresholds were 10.51 and 39.19 °C, respectively, while the optimum developmental temperature was 26.9 °C. The thermal constant for egg to adult development was estimated at 87.7DD. The highest fecundity was observed at 25 °C. These parameters indicated that mites begin feeding at the onset of shoot growth when tissue is most susceptible in spring. Historical weather data showed that vines are in this susceptible growth stage for longer periods in the cool Willamette Valley compared with warmer Umpqua and Applegate/Rogue Valley regions. Estimation of degree-days indicated when deutogyne mites move to overwintering refuge sites. Degree-day accumulations indicated up to 14 generations per growing season.