R-2-hydroxyglutarate attenuates aerobic glycolysis in leukemia by targeting the FTO/m6A/PFKP/LDHB axis

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Shark depredation in commercial and recreational fisheries

Shark depredation, where a shark partially or completely consumes an animal caught by fishing gear before it can be retrieved to the fishing vessel, occurs in commercial and recreational fisheries worldwide, causing a range of negative biological and economic impacts. Despite this, it remains relatively understudied compared to other fisheries issues. This is the first review of the literature relating to shark depredation, which also includes an overview of the potential mechanisms underlying its occurrence and options for mitigation. Furthermore, this review highlights key research gaps that remain to be investigated, thereby providing impetus for future research. In total, 61 studies have been published between 1955 and 2018, which include information on shark depredation. These studies recorded quantitative rates of depredation between 0.9 and 26% in commercial and recreational fisheries and during research fishing, identified 27 shark species from seven families that were responsible for depredation and discussed potential factors influencing its occurrence. Information from research into bycatch mitigation and the testing of shark deterrent approaches and technologies is also presented, in the context of applying these approaches to the reduction of shark depredation. This review presents an holistic overview of shark depredation in fisheries globally and, in doing so, provides a central resource for fisheries researchers and managers focusing on this topic to stimulate further collaborative research on this important fisheries issue.     

Aggregating fields of annual crops to form larger-scale monocultures can suppress dispersal-limited herbivores

An important part of landscape ecology is determining how the arrangement (aggregation or fragmentation) of patches in space influences the population dynamics of foraging organisms. One hypothesis in agricultural ecology is that fine-grain spatial heterogeneity in cropping (many small agricultural fields) should provide better pest control than coarse-grain heterogeneity (few large agricultural fields); this hypothesis has been proposed as an explanation for the increased pest abundance associated with agricultural intensification. However, empirical studies have found mixed support for this hypothesis, and some, surprisingly, demonstrate a strong decrease in pest abundance with increased crop aggregation. We developed a spatially explicit simulation model of pest movement across an agricultural landscape to uncover basic processes that could reduce pest abundance in landscapes with fewer, larger fields. This model focuses on herbivore movement and does not include predation effects or other biological interactions. We found that field aggregation in the model led to severely reduced pest densities and further discovered that this relationship was due to an increased distance between fields and a decreased “target area” in more aggregated landscapes. The features that create a negative relationship between aggregation and pest densities rely on crop rotation and limited dispersal capabilities of the pests. These findings help to explain seemingly counter-intuitive empirical studies and provide an expectation for when field aggregation may reduce pest populations in agro-ecosystems.     

Metabolic recovery in Atlantic salmon fry and parr following forced activity

Atlantic salmon Salmo salar fry and parr were subjected to 5 min of forced activity and the subsequent changes in oxygen consumption and ammonia excretion rates were evaluated over a 24 h period. In a second experiment, individual Atlantic salmon fry and parr were freeze‐clamped in liquid nitrogen, before, immediately following a 5 min activity period, or after periods of recovery up to 2 h. Samples were analysed for whole body phosphocreatine (PCr), ATP and lactate. Five minutes of forced activity resulted in significant increases in both oxygen consumption and ammonia excretion rates. Changes in the oxygen consumption rates were greater in the parr compared with the fry. In contrast, the post‐exercise ammonia excretion rates were nearly twice as high for the fry compared with the parr. Exercise also caused a marked decrease in PCr levels (c. 47 and 65% in fry and parr, respectively), no change in ATP levels and a significant increase in lactate levels in Atlantic salmon fry and parr. Recovery of PCr occurred quickly (between 15 and 30 min) in fry and parr. Although the post‐activity levels of lactate were lower in fry (c. 3 μmol g^?1) compared with parr (c. 14 μmol g^?1), lactate levels returned to control levels within 60 min in fry, but it took >2 h for this metabolite to recover in parr. Compared with parr, these findings show that Atlantic salmon fry possess a reduced anaerobic capacity, and these results are consistent with the theoretical and experimental evidence that smaller fish support burst swimming through aerobic processes.     

Identification and expression of the first nonmammalian amyloid-beta precursor-like protein APLP2 in the amphibian Xenopus laevis.

The Alzheimer's disease-linked amyloid-beta precursor protein (APP) belongs to a superfamily of proteins, which also comprises the amyloid-beta precursor-like proteins, APLP1 and APLP2. Whereas APP has been identified in both lower and higher vertebrates, thus far, APLP1 and 2 have been characterized only in human and rodents. Here we identify the first nonmammalian APLP2 protein in the South African claw-toed frog Xenopus laevis. The identity between the Xenopus and mammalian APLP2 proteins is approximately 75%, with the highest degree of conservation in a number of amino-terminal regions, the transmembrane domain and the cytoplasmic tail. Furthermore, amino acid residues known to be phosphorylated and glycosylated in mammalian APLP2 are conserved in Xenopus. The availability of the Xenopus APLP2 protein sequence allowed a phylogenetic analysis of APP superfamily members that suggested the occurrence of APP and preAPLP lineages with their separation predating the mammalian-amphibian split. As in mammals, Xenopus APLP2 mRNA was ubiquitously expressed and alternatively spliced forms were detected. However, the expression ratios between the mRNA forms in the various tissues examined were different between Xenopus and mammals, most prominently for the alternatively spliced forms containing the Kunitz protease inhibitor-coding region that were less abundantly expressed than the corresponding mammalian forms. Thus, the identification of APLP2 in Xenopus has revealed evolutionarily conserved regions that may help to delineate functionally important domains, and its overall high degree of conservation suggests an important role for this APP superfamily member.     

Characterization and localization of two forms of gonadotropin-releasing hormone (GnRH) in the spinal cord of the frog Rana ridibunda

Two molecular variants of gonadotropin-releasing hormone (GnRH) have been previously characterized in the brain of amphibians, i.e., mammalian GnRH (mGnRH) and chicken GnRH-II (cGnRH-II). The aim of the present study was to identify the molecular forms of gonadotropin-releasing hormone and to localize gonadotropin-releasing hormone-containing elements in the spinal cord of the frog Rana ridibunda using highly specific antisera against mGnRH and cGnRH-II. High-performance liquid chromatography (HPLC) analysis combined with radioimmunoassay (RIA) detection revealed that frog spinal cord extracts contained both mGnRH and cGnRH-II. Immunohistochemical labeling revealed that the frog spinal cord was devoid of GnRH-containing cell bodies. In contrast, numerous GnRH-immunoreactive fibers were observed throughout the entire length of the cord. mGnRH immunoreactivity was only detected in the rostral region of the cord and consisted of varicose processes located in the vicinity of the central canal. cGnRH-II-positive fibers were found throughout the spinal cord, the density of immunoreactive processes decreasing gradually toward the caudal region. Two main cGnRH-II-positive fiber tracts with a rostrocaudal orientation were observed: a relatively dense fiber bundle surrounding the central canal, and a more diffuse plexus in the white matter. In addition, short, varicose cGnRH-II-positive processes with a radial orientation were present throughout the gray matter. These fibers were particularly abundant ventromedially and formed a diffuse network that ramified laterally to end in the vicinity of motoneurons. Taken together, these data indicate that the frog spinal cord, like the frog brain, contains two forms of GnRH. The presence of numerous cGnRH-II-immunoreactive fibers in the ventral horn suggests that cGnRH-II may influence the activity of a subpopulation of motoneurons.