Sequence similarity is more relevant than species specificity in probabilistic backtranslation

Background  

Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module. The degeneracy of the genetic code makes backtranslation potentially ambiguous since most amino acids are encoded by multiple codons. The common approach to overcome this difficulty is based on imitation of codon usage within the target species.     

Metastatic tumour cells favour the generation of a tolerogenic milieu in tumour draining lymph node in patients with early cervical cancer

Objective  We compared the immune system state in metastatic tumour draining lymph nodes (mTDLN) and metastasis free TDLN (mfTDLN) in 53 early stage cervical cancer patients to assess whether the presence of metastatic tumour cells worsen the balance between an efficacious anti-tumour and a tolerogenic microenvironment. Methods  The immune system state was measured by immunophenotypic and functional assessment of suppressor and effector immune cell subsets. Results  Compared to mfTDLN, mTDLN were significantly enriched in CD4⁺Foxp3⁺ regulatory T cells (Treg), which, in addition, exhibited an activated phenotype (HLA-DR⁺ and CD69⁺). Treg in mTDLN were also significantly enriched in neuropilin-1 (Nrp1) expressing cells, a subset particularly potent in dampening T cell responses. mTDLN tended to be enriched in a population of CD8⁺Foxp3⁺T cells (operationally defined as CD8⁺Treg) that showed a suppressor potency similar to Treg under the same experimental conditions. Plasmacytoid dendritic cells (pDC) and myeloid DC (mDC) generally show distinct roles in inducing T cell tolerance and activation, respectively. In line with the excess of suppressor T cells, the ratio pDC to mDC was significantly increased in mTDLN. Immunohistochemical testing showed that metastatic tumour cells produced the vascular endothelial growth factor, a natural ligand for Nrp1 expressed on the cell surface of Nrp1⁺Treg and pDC, and therefore a potential mediator by which tumour cells foster immune privilege in mTDLN. Consistent with the overall tolerogenic profile, mTDLN showed a significant Tc2 polarisation and tended to contain lower numbers of CD45RA⁺CD27⁻ effector memory CD8⁺T cells. Conclusions  The increased recruitment of suppressor type cells concomitant with the scarcity of cytotoxic type cells suggests that in mTDLN the presence of tumour cells could tip the balance against anti-tumour immune response facilitating the survival of metastatic tumour cells and possibly contributing to systemic tolerance.     

Heterologous synthesis of geranyllinalool,a diterpenol plant product,in the cyanobacterium Synechocystis

Cyanobacteria are industrially robust photosynthetic microorganisms that can be genetically programmed to synthesize commodity products for domestic and industrial consumption. In the present work, Synechocystis was endowed with the synthesis of the plant secondary metabolite geranyllinalool, a diterpene alcohol of commercial interest. Total average yields of 360 μg of geranyllinalool per gram of dry cell weight were obtained in the course of a 48-h cultivation period. Geranyllinalool was primarily sequestered inside the transformant cells, corresponding to 60–70% of the total heterologous product, instead of being entirely exuded, as the case is with shorter heterologous terpene hydrocarbons. Extraction of geranyllinalool necessitated disruption of the cells in order to release and isolate this chemical product. Moreover, geranyllinalool accumulation in the cells caused a mild inhibitory effect on cell fitness and biomass growth rate, such that the duplication time of Synechocystis transformants was 1.4-fold longer than that of the control. The remaining 30–40% of the geranyllinalool product was found to float on the surface of sealed transformant cultures, where it was siphoned off by applying a hydrophobic overlayer, with no need to disrupt the cells in this case. Concluding, the work extended efforts to heterologously produce terpene and terpenol products in cyanobacteria, and addressed possibilities and constrains inherent to this production system.

     

P2Y<Subscript>1</Subscript>receptor switches to neurons from glia in juvenile versus neonatal rat cerebellar cortex

Background  

In the CNS, several P2 receptors for extracellular nucleotides are identified on neurons and glial cells to participate to neuron-neuron, glia-glia and glia-neuron communication.     

What strikes most when we think of Geoff

Purinergic Signalling -     

Micromorphological,geochemical, and diagenetic characterization of sirenian ribs preserved in the Late Miocene paleontological site of Cessaniti (southern Calabria,Italy)

The site of Cessaniti (Vibo Valentia, Italy) has been well known since the 19th century for the richness and good preservation of its Miocene fauna and flora. The sedimentary succession of the site represents a paralic system that evolved toward an open-marine environment recording the Tortonian transgression. The fossil assemblage contains rich invertebrate (corals, bivalves, gastropods, brachiopods, echinoids, benthic and planktonic foraminifers) and vertebrate faunas (proboscideans, rhinoceroses, giraffids, bovids, sirenids, marine turtles, and fish remains). The fossils recovered at the Cessaniti site have a relevant role in phylogenetic studies and paleogeographic reconstructions of Late Miocene environments of the southern Italy. This research is focused on the microstructure and preservation state of the fossil bones. Samples of Metaxytherium sp. bones have been analyzed to understand the diagenetic profile of the bone assemblages that characterizes the taphonomic history of the Cessaniti site. The analyses provided a comprehensive account of how bone mineral (bioapatite) has been altered and demonstrated that the post-burial processes did not significantly affect the micromorphological and biogeochemical features of the bones. The excellent preservation state of the bones strengthens the importance of the Cessaniti site for studies of the Mediterranean Miocene vertebrate fauna.