Structural and functional relationships of human DNA polymerases

A continuing theme of our laboraory, has been the understanding of human DNA polymerases at the structural level. We have purified DNA polymerases delta, epsilon and alpha from human placenta. Monoclonal antibodies to these polymerases were isolated and used as tools to study their immunochemical relationships. These studies have shown that while DNA polymerases delta, epsilon and alpha are discrete protiens, they must share common structural features by virtue of the ability of several of our monoclonal antibodies to exhibit cross-reactivity. A second approach we have taken is the molecular cloning of human DNA polymerase delta and epsilon. We have cloned the DNA polymerase delta cDNA, and this has allowed us to compare its primary structure to those of human polymerase alpha and other members of this polymerase family. Multiple sequence alignments have revealed that human DNA polymerase delta is also closely related to the herpes virus family of DNA polymerases. In situ hybridization has shown that the human DNA polymerase delta gene is localized to chromosome 19 q13.3–q13.4. In order to further determine the functional regions of the DNA polymerase δ structure we are currently expressing human pol δ inE. coli and baculovirus systems. Other work in our laboratory is directed toward examining the expression of DNA polymerase δ during the cell cycle.     

Chromosome organization revealed upon the decondensation of telophase chromosomes inAllium

Chromosomes of root tip cells ofAllium cepa andAllium sativum were studied in early, middle and late telophase to examine the organization of mitotic chromosomes, taking advantage of the naturally occurring chromosome dispersion during the process of decondensation in telophase. Longitudinal and transverse sections of telophase chromosomes viewed under the transmission electron microscope showed that mitotic chromosomes inAllium were composed of helically coiled 400–550 nm chromatin fibres. In some regions of the longitudinal sections, these chromatin fibres were seen to be orientated parallel to one another but formed roughly a right angle to the long axis of the chromosome. In transverse sections, the telophase chromosome appeared to have a hollow centre encircled by the 400–550 nm chromatin fibre which in turn was a hollow tube structure formed by the coiling of a thinner fibre of 170–200 nm. In addition, cross views of chromatin fibres of 170–200 nm and 50–70 nm were also identified in telophase chromosome preparations. These two organizational levels of chromatin fibres also showed a hollow centre. The process of decondensation of telophase chromosomes is described, and some morphological characteristics associated with the activities of chromosome decondensation are analysed. Based on the observations made onAllium chromosomes in this study, various models of chromosome organization are discussed.     

玛曲县植被覆被变化及其对环境要素的响应

植被覆被变化是气象要素和人类活动综合作用的结果,能够反映区域内生态系统的演替趋势。玛曲高寒生态区作为黄河上游重要的水源涵养和补给区,具有维持区域生物多样性和生态安全,保障经济社会健康发展的重要作用,因此厘清该区域植被变化与气候及人类活动等环境要素的相互关系有助于为玛曲县生态治理与恢复提供科学参考。鉴于此,以2000-2015年MODIS/NDVI数据为基础,结合同期气象与人类活动数据,应用趋势分析法、相关分析以及通径分析等方法,分析了玛曲县植被NDVI的时空变化规律,并详细探讨了气象要素和人类活动对植被覆被变化的影响。结果表明：（1）2000-2015年玛曲县NDVI呈波动上升趋势,上升速率为0.01015/10a;各土地利用/覆被类型中,增加幅度由大到小依次为高山稀疏植被、湿地、沙化草甸、山地疏林地、高寒草甸、亚高山硬叶灌丛、亚高山阔叶灌丛和高寒草原;增加面积占相应地类总面积比例由大到小分别是高山稀疏植被（75.57%）、山地疏林地（71.45%）、沙化草甸（71.18%）、湿地（70.66%）、高寒草甸（68.15%）、亚高山硬叶灌丛（66.96%）、亚高山阔叶灌丛（66.24%）和高寒草原（66.05%）;（2）气象要素中,气温与NDVI间具有显著正相关（P < 0.05）,是影响植被覆被的决定性因子,利于植被的生长与发育;降水与NDVI间相关不显著（P > 0.05）,对植被覆被的影响较小;（3）人类活动要素中,与放牧强度密切相关的大牲畜存栏数和羊存栏数是植被生长的主控因子,其中大牲畜存栏数呈显著的抑制作用（P < 0.05）,羊存栏数具有较强的促进作用（P < 0.05）;（4）通径分析发现,气温、大牲畜存栏数和羊存栏数的决定系数依次为0.3005,-0.0563和0.0128,说明气温对NDVI的综合作用强度最高、大牲畜存栏数次之,羊存栏数最低;此外,剩余通径系数为0.53。该数值较大,表明仍有部分对NDVI增加存在影响的环境要素未考虑到,需在今后的研究中给予关注。     

青海湖裸鲤自然产卵场的生境特征及无人机遥测判别——以泉吉河为例

自然产卵场是维持物种延续最关键的栖息地,青海湖裸鲤（Gymnocypris przewalskii）的自然繁殖栖息地状况和生境特征尚缺乏详细的定量研究。以青海湖入湖河流泉吉河为例,在平水期采用现场调查和无人机遥测的方法对青海湖裸鲤的自然产卵场分布及生境状况进行调查,确定其产卵场生境特征参数,建立基于无人机遥测识别产卵场的方法并进行复核验证。结果表明：泉吉河河道形态可分为弯曲型、分汊型和顺直型等三种典型河型,青海湖裸鲤自然产卵场主要分布在弯曲型和分汊型河道中,分汊型河道几乎100%都有产卵场分布,弯曲型河道有70%为产卵场;产卵场河道平均长度（135.13±61.13） m,平均宽度（30.01±17.51） m,平均曲折度1.09±0.07;平均面积（4586.6±4201.61） m²;产卵场常位于缓水浅滩处,平均水深（0.19±0.10） m （范围：0.03-0.44m）,平均流速（0.24±0.20） m/s （范围：0.01-0.81m/s）,河床质为含有沙粒的卵石（粒径：163-256mm）底质。河道形态、沙洲分布、水深特征等特征参数可作为无人机遥测识别产卵场的判断条件,并实现验证成功。研究结果可为开展整个流域的青海湖裸鲤自然产卵场现状评估及保护对策制定提供技术支撑。     

微生物介导的金纳米颗粒合成

金纳米颗粒凭借其独特的光学和电化学特性,广泛应用于信息存储、化学传感、医学成像、药物传输以及生物标记等领域。近年来,生物法合成金纳米颗粒因其环境友好、绿色低毒等特点引起研究者的广泛关注。研究表明,多种微生物包括细菌、放线菌、真菌和病毒等均具有合成金纳米颗粒的能力。本文综述了微生物介导合成金纳米颗粒的特性、机制及应用,并对未来发展趋势进行了展望。     

青藏高原重大建设工程生态修复综合效益评估指标体系

青藏高原作为我国重要的生态屏障和战略资源基地,兼顾经济社会的发展和生态环境的保护,是当前区域发展的主要目标。为实现该目标,国家先后开展了多项推动当地经济发展的重大建设工程项目,并在项目开展的过程中,针对出现的生态问题,实施了一系列的生态修复措施。目前针对青藏高原重大建设工程生态修复的研究,在多工程类型修复效益的融合,以及宏观空间布局尺度上对生态修复成效的评估还相对较少,并且缺乏统一的评价标准。故本研究选取青藏高原道路、水电和矿产开发三类典型的重大建设工程,结合区域及工程特点,通过文献调研、业界专家咨询等方法手段,以生态修复后的生态系统结构、质量和服务为核心架构,筛选能够综合客观的反映该地区生态修复效益的具体指标,最终构建系统、合理和科学的青藏高原重大建设工程生态修复综合效益评估指标体系。该评估指标体系涉及生态系统结构、质量和服务三大指标类别,包括10个主题指标,21个具体指标。以期为青藏高原重大建设工程生态修复效益的总体认知和长期监测,以及未来生态修复工程的制定、建设工程的布局及其他生态系统管理措施的实施,和未来生态修复评估的相关研究提供科学参考和理论支撑。     

利用皇竹草处理城市污泥生产植物产品

利用大生物量植物——皇竹草(Pennisetum hydridum),处理城市污泥高效生产有用的植物产品。通过小型田间试验,采用根兜分株移栽和直接扦插方式种植皇竹草,比较土壤、新鲜污泥、土壤+新鲜污泥等体积混合、植物处理后的污泥4种介质的适应性,测定了皇竹草的成活率和生长状况,以及污泥自身性质的变化;通过盆栽试验及田间试验进一步探讨育苗后移栽在新鲜污泥上的可行性。结果表明,新鲜污泥上直接扦插的皇竹草无一存活,即使是根兜分株移栽其成活率也仅为16.67%,生长较差。而对于土壤+污泥混合物或植物处理后的污泥,采用直接扦插方式,皇竹草的成活率也分别达58.33%、75.00%,两个月干草产量达22.20、19.80 t/hm2,为土壤上的5.11、4.55倍。皇竹草吸收K较明显,3个有污泥的处理皇竹草K含量接近40 g/kg干重,N、P2O5、K2O的总含量大于70 g/kg,可作为有机K肥原料;皇竹草重金属Cu、Zn、Pb、Cd含量均符合国家饲料卫生标准(GB 13078—2001),作为饲料是安全的。盆栽试验及田间试验表明,采用育苗后移栽的方式,皇竹草在新鲜污泥上的成活率达66.67%以上。因此,城市污泥直接种植皇竹草可以实现资源化利用。     

SARS-CoV-2 envelope protein causes acute respiratory distress syndrome (ARDS)-like pathological damages and constitutes an antiviral target

Cytokine storm and multi-organ failure are the main causes of SARS-CoV-2-related death. However, the origin of excessive damages caused by SARS-CoV-2 remains largely unknown. Here we show that the SARS-CoV-2 envelope (2-E) protein alone is able to cause acute respiratory distress syndrome (ARDS)-like damages in vitro and in vivo. 2-E proteins were found to form a type of pH-sensitive cation channels in bilayer lipid membranes. As observed in SARS-CoV-2-infected cells, heterologous expression of 2-E channels induced rapid cell death in various susceptible cell types and robust secretion of cytokines and chemokines in macrophages. Intravenous administration of purified 2-E protein into mice caused ARDS-like pathological damages in lung and spleen. A dominant negative mutation lowering 2-E channel activity attenuated cell death and SARS-CoV-2 production. Newly identified channel inhibitors exhibited potent anti-SARS-CoV-2 activity and excellent cell protective activity in vitro and these activities were positively correlated with inhibition of 2-E channel. Importantly, prophylactic and therapeutic administration of the channel inhibitor effectively reduced both the viral load and secretion of inflammation cytokines in lungs of SARS-CoV-2-infected transgenic mice expressing human angiotensin-converting enzyme 2 (hACE-2). Our study supports that 2-E is a promising drug target against SARS-CoV-2.Subject terms: Cell death, Molecular biology     

Rapid improvement of rice eating and cooking quality through gene editing toward glutelin as target

Rice eating and cooking quality(ECQ) is a major concern of breeders and consumers, determining market competitiveness worldwide. Rice grain protein content(GPC) is negatively related to ECQ,making it possible to improve ECQ by manipulating GPC. However, GPC is genetically complex and sensitive to environmental conditions; therefore, little progress has been made in traditional breeding for ECQ. Here, we report that CRISPR/Cas9-mediated knockout of genes encoding the grain storage protein gluteli...     

DNA宏条形码技术在食草动物食性研究中的应用

随着测序技术的快速发展,整合DNA条形码和高通量测序的DNA宏条形码技术已经成为当前研究热点之一,在食草动物的食性鉴定中有很大潜力.放牧动物食性研究是动物营养学和草地生态学领域的重要研究内容.而与传统食性研究方法相比,宏条形码技术可通过对植物DNA条形码的高通量测序,获得样本中的物种组成进而分析动物食性.介绍了传统食性...