Testing the interaction between analytical modules: an example with Roundup Ready<Superscript>®</Superscript>soybean line GTS 40-3-2

Background  

The modular approach to analysis of genetically modified organisms (GMOs) relies on the independence of the modules combined (i.e. DNA extraction and GM quantification). The validity of this assumption has to be proved on the basis of specific performance criteria.     

Assessing Archeal Indicators of Performance by RT-qPCR Methods During Anaerobic Co-digestion of Organic Wastes

Biogas is a renewable energy resource produced during the anaerobic digestion of various organic substrates. A wide community of microorganisms is involved, including methanogens. These Archaea are the biologic key to the process because they accomplish the methane-forming reaction. Despite its crucial role, the microbiome inside the digester is poorly understood. The aim of this work is to develop bioindicators of efficiency for the anaerobic process through the quantification and characterisation of the methanogens and sulphate-reducing bacteria. From a full-scale digester fed with organic wastes, 31 samples were collected. Temperature, pH, acidity, alkalinity and biogas quantity and quality were monitored over time. The methanogens were detected from the samples both in total and as belonging to different taxa units. These evaluations, by real-time quantitative PCR (RT-qPCR) methods, produced valuable results for Methanosarcina, Methanosaeta, Methanocorpusculaceae and sulphate-reducing bacteria. Methanosarcina was the most abundant family, followed by Methanocorpusculaceae and then Methanosaeta. The methanogen taxa are significantly and directly correlated with each other (p?<?0.05). Methanosaeta and Methanocorpusculaceae are present in significantly different amounts at different temperatures. While Methanosaeta levels also change when the organic load increases (t test, p?<?0.05), Methanosarcina is more tolerant, and its levels are quite constant. Methanosarcina and Methanosaeta are proposed to be bioindicators of the stability of the process (the first) and of susceptibility (the second) to detect early sufferance conditions in the digester. These methods will be useful in the control and optimisation of an eco-friendly waste-to-energy system.     

The R-Ras/RIN2/Rab5 complex controls endothelial cell adhesion and morphogenesis via active integrin endocytosis and Rac signaling

During developmental and tumor angiogenesis, semaphorins regulate blood vessel navigation by signaling through plexin receptors that inhibit the R-Ras subfamily of small GTPases. R-Ras is mainly expressed in vascular cells, where it induces adhesion to the extracellular matrix (ECM) through unknown mechanisms. We identify the Ras and Rab5 interacting protein RIN2 as a key effector that in endothelial cells interacts with and mediates the pro-adhesive and -angiogenic activity of R-Ras. Both R-Ras-GTP and RIN2 localize at nascent ECM adhesion sites associated with lamellipodia. Upon binding, GTP-loaded R-Ras converts RIN2 from a Rab5 guanine nucleotide exchange factor (GEF) to an adaptor that first interacts at high affinity with Rab5-GTP to promote the selective endocytosis of ligand-bound/active β1 integrins and then causes the translocation of R-Ras to early endosomes. Here, the R-Ras/RIN2/Rab5 signaling module activates Rac1-dependent cell adhesion via TIAM1, a Rac GEF that localizes on early endosomes and is stimulated by the interaction with both Ras proteins and the vesicular lipid phosphatidylinositol 3-monophosphate. In conclusion, the ability of R-Ras-GTP to convert RIN2 from a GEF to an adaptor that preferentially binds Rab5-GTP allows the triggering of the endocytosis of ECM-bound/active β1 integrins and the ensuing funneling of R-Ras-GTP toward early endosomes to elicit the pro-adhesive and TIAM1-mediated activation of Rac1.