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991.
Nikhil Ram-Mohan Aharon Oren R. Thane Papke 《Extremophiles : life under extreme conditions》2016,20(5):747-757
Stability of microbial communities can impact the ability of dispersed cells to colonize a new habitat. Saturated brines and their halophile communities are presumed to be steady state systems due to limited environmental perturbations. In this study, the bacteriorhodopsin-containing fraction of the haloarchaeal community from Eilat salt crystallizer ponds was sampled five times over 3 years. Analyses revealed the existence of a constant core as several OTUs were found repeatedly over the length of the study: OTUs comprising 52 % of the total cloned and sequenced PCR amplicons were found in every sample, and OTUs comprising 89 % of the total sequences were found in more than one, and often more than two samples. LIBSHUFF and UNIFRAC analyses showed statistical similarity between samples and Spearman’s coefficient denoted significant correlations between OTU pairs, indicating non-random patterns in abundance and co-occurrence of detected OTUs. Further, changes in the detected OTUs were statistically linked to deviations in salinity. We interpret these results as indicating the existence of an ever-present core bacteriorhodopsin-containing Eilat crystallizer community that fluctuates in population densities, which are controlled by salinity rather than the extinction of some OTUs and their replacement through immigration and colonization. 相似文献
992.
Background
Shiga toxin-producing Escherichia coli (STEC), including E. coli O157:H7, are responsible for numerous foodborne outbreaks annually worldwide. E. coli O157:H7, as well as pathogenic non-O157:H7 STECs, can cause life-threating complications, such as bloody diarrhea (hemolytic colitis) and hemolytic-uremic syndrome (HUS). Previously, we developed a real-time PCR assay to detect E. coli O157:H7 in foods by targeting a unique putative fimbriae protein Z3276. To extend the detection spectrum of the assay, we report a multiplex real-time PCR assay to specifically detect E. coli O157:H7 and screen for non-O157 STEC by targeting Z3276 and Shiga toxin genes (stx1 and stx2). Also, an internal amplification control (IAC) was incorporated into the assay to monitor the amplification efficiency.Methods
The multiplex real-time PCR assay was developed using the Life Technology ABI 7500 System platform and the standard chemistry. The optimal amplification mixture of the assay contains 12.5 μl of 2 × Universal Master Mix (Life Technology), 200 nM forward and reverse primers, appropriate concentrations of four probes [(Z3276 (80 nM), stx1 (80 nM), stx2 (20 nM), and IAC (40 nM)], 2 μl of template DNA, and water (to make up to 25 μl in total volume). The amplification conditions of the assay were set as follows: activation of TaqMan at 95 °C for 10 min, then 40 cycles of denaturation at 95 °C for 10 s and annealing/extension at 60 °C for 60 s.Results
The multiplex assay was optimized for amplification conditions. The limit of detection (LOD) for the multiplex assay was determined to be 200 fg of bacterial DNA, which is equivalent to 40 CFU per reaction which is similar to the LOD generated in single targeted PCRs. Inclusivity and exclusivity determinants were performed with 196 bacterial strains. All E. coli O157:H7 (n = 135) were detected as positive and all STEC strains (n = 33) were positive for stx1, or stx2, or stx1 and stx2 (Table 1). No cross reactivity was detected with Salmonella enterica, Shigella strains, or any other pathogenic strains tested.Conclusions
A multiplex real-time PCR assay that can rapidly and simultaneously detect E. coli O157:H7 and screen for non-O157 STEC strains has been developed and assessed for efficacy. The inclusivity and exclusivity tests demonstrated high sensitivity and specificity of the multiplex real-time PCR assay. In addition, this multiplex assay was shown to be effective for the detection of E. coli O157:H7 from two common food matrices, beef and spinach, and may be applied for detection of E. coli O157:H7 and screening for non-O157 STEC strains from other food matrices as well.993.
The replicative lifespan of normal somatic cells is restricted by the erosion of telomeres, which are protective caps at the
ends of linear chromosomes. The loss of telomeres induces antiproliferative signals that eventually lead to cellular senescence.
The enzyme complex telomerase can maintain telomeres, but its expression is confined to highly proliferative cells such as
stem cells and tumor cells. The immense regenerative capacity of the hematopoietic system is provided by a distinct type of
adult stem cell: hematopoietic stem cells (HSCs). Although blood cells have to be produced continuously throughout life, the
HSC pool seems not to be spared by aging processes. Indeed, limited expression of telomerase is not sufficient to prevent
telomere shortening in these cells, which is thought ultimately to limit their proliferative capacity. In this review, we
discuss the relevance of telomere maintenance for the hematopoietic stem cell compartment and consider potential functions
of telomerase in this context. We also present possible clinical applications of telomere manipulation in HSCs and new insights
affecting the aging of the hematopoietic stem cell pool and replicative exhaustion.
This work was supported by European Community Grant LSHC-CT-2004-502943 (MOL CANCER MED). 相似文献
994.
Chi Zhang Hanqin Tian Shufen Pan Mingliang Liu Graeme Lockaby Erik B. Schilling John Stanturf 《Ecosystems》2008,11(8):1211-1222
Forest regrowth after cropland abandonment and urban sprawl are two counteracting processes that have influenced carbon (C)
sequestration in the southeastern United States in recent decades. In this study, we examined patterns of land-use/land-cover
change and their effect on ecosystem C storage in three west Georgia counties (Muscogee, Harris, and Meriwether) that form
a rural–urban gradient. Using time series Landsat imagery data including MSS for 1974, TM for 1983 and 1991, and ETM for 2002,
we estimate that from 1974 to 2002, urban land use in the area has increased more than 380% (that is, 184 km2). Most newly urbanized land (63%) has been converted from forestland. Conversely, cropland and pasture area has decreased
by over 59% (that is, 380 km2). Most of the cropland area was converted to forest. As a result, the net change in forest area was small over the past 29
years. Based on Landsat imagery and agricultural census records, we reconstructed an annual gridded data set of land-cover
change for the three counties for the period 1850 to 2002. These data sets were then used as input to the Terrestrial Ecosystem
Model (TEM) to simulate land-use effects on C fluxes and storage for the study area. Simulated results suggest that C uptake
by forest regrowth (approximately 23.0 g C m−2 y−1) was slightly greater than the amount of C released due to deforestation (approximately 18.4 g C m−2 y−1), thus making the three counties a weak C sink. However, the relative importance of different deforestation processes in
this area changed significantly through time. Although agricultural deforestation was generally the most important C-release
process, the amount of C release attributable to urbanization has increased over time. Since 1990, urbanization has accounted
for 29% of total C loss from the study area. We conclude that balancing urban development and forest protection is critically
important for C management and policy making in the southeastern United States. 相似文献
995.
Mohd Zeeshan Ansari Jyoti Sharma Rajesh S Gokhale Debasisa Mohanty 《BMC bioinformatics》2008,9(1):454
Background
Secondary metabolites biosynthesized by polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) family of enzymes constitute several classes of therapeutically important natural products like erythromycin, rapamycin, cyclosporine etc. In view of their relevance for natural product based drug discovery, identification of novel secondary metabolite natural products by genome mining has been an area of active research. A number of different tailoring enzymes catalyze a variety of chemical modifications to the polyketide or nonribosomal peptide backbone of these secondary metabolites to enhance their structural diversity. Therefore, development of powerful bioinformatics methods for identification of these tailoring enzymes and assignment of their substrate specificity is crucial for deciphering novel secondary metabolites by genome mining. 相似文献996.
Dibendu Betal Ramesh Babu Veysi Mehmet 《International Seminars in Surgical Oncology : ISSO》2009,6(1):9
Synovial sarcomas are a rare form of soft tissue sarcomas. We present a case of a 62 year-old male presenting with a left thyroid lump initially though to be a thyroid adenoma but subsequently diagnosed as a monophasic synovial sarcoma of the pharynx. We discuss the diagnosis and treatment of this case. 相似文献
997.
Fengjie Cui Zhiqiang Liu Yin Li Lifeng Ping Liying Ping Zhicai Zhang Lin Lin Ying Dong Daming Huang 《Biotechnology and Bioprocess Engineering》2010,15(2):299-307
The Doehlert experimental design was used to optimize the production of mycelial biomass and exopolymer from Hericium erinaceus CZ-2 in this study. Statistical analysis showed that the linear and quadric terms of 3 variables: corn flour, yeast extract,
and corn steep liquor had significant effects. The optimized combination of these 3 variables was confirmed through validation
experiments. The optimal conditions for higher production of mycelial biomass (19.92 g/L) were estimated when the media composition
concentrations were set as: 30.85 g/L, corn flour; 2.81 g/L, yeast extract; 16.9 mL/L, corn steep liquor; 10 g/L, glucose;
1 g/L, KH2PO4; and 0.5 g/L, MgSO4·7H2O; while a maximal exo-polymer yield (1.653 g/L) could be achieved when setting concentrations of: 32.71 g/L, corn flour;
2.35 g/L, Yeast extract; 14.42 mL/L, Corn steep liquor; 10 g/L, glucose; 1 g/L, KH2PO4; and 0.5 g/L, MgSO4·7H2O. The upscale production was also investigated using a 15 L fermentor using the optimized medium. 相似文献
998.
999.
Sher Hayat Khan Deming Zhao Syed Zahid Ali Shah Mohammad Farooque Hassan Ting Zhu Zhiqi Song Xiangmei Zhou Lifeng Yang 《Cellular and molecular neurobiology》2017,37(4):717-728
Transmissible spongiform encephalopathies (TSEs) are caused by the accumulation of the abnormal prion protein scrapie (PrPSc). Prion protein aggregation, misfolding, and cytotoxicity in the brain are the major causes of neuronal dysfunction and ultimate neurodegeneration in all TSEs. Parkin, an E3 ubiquitin ligase, has been studied extensively in all major protein misfolding aggregating diseases, especially Parkinson’s disease and Alzheimer’s disease, but the role of parkin in TSEs remains unknown. Here we investigated the role of parkin in a prion disease cell model in which neuroblastoma2a (N2a) cells were treated with prion peptide PrP106–126. We observed a gradual decrease in the soluble parkin level upon treatment with PrP106–126 in a time-dependent manner. Furthermore, endogenous parkin colocalized with FITC-tagged prion fragment106–126. Overexpression of parkin in N2a cells via transfection repressed apoptosis by enhancing autophagy. Parkin-overexpressing cells also showed reductions in apoptotic BAX translocation to the mitochondria and cytochrome c release to the cytosol, which ultimately inhibited activation of proapoptotic caspases. Taken together, our findings reveal a parkin-mediated cytoprotective mechanism against PrP106–126 toxicity, which is a novel potential therapeutic target for treating prion diseases. 相似文献
1000.