In planta chemical cross‐linking and mass spectrometry analysis of protein structure and interaction in Arabidopsis

Site‐specific chemical cross‐linking in combination with mass spectrometry analysis has emerged as a powerful proteomic approach for studying the three‐dimensional structure of protein complexes and in mapping protein–protein interactions (PPIs). Building on the success of MS analysis of in vitro cross‐linked proteins, which has been widely used to investigate specific interactions of bait proteins and their targets in various organisms, we report a workflow for in vivo chemical cross‐linking and MS analysis in a multicellular eukaryote. This approach optimizes the in vivo protein cross‐linking conditions in Arabidopsis thaliana, establishes a MudPIT procedure for the enrichment of cross‐linked peptides, and develops an integrated software program, exhaustive cross‐linked peptides identification tool (ECL), to identify the MS spectra of in planta chemical cross‐linked peptides. In total, two pairs of in vivo cross‐linked peptides of high confidence have been identified from two independent biological replicates. This work demarks the beginning of an alternative proteomic approach in the study of in vivo protein tertiary structure and PPIs in multicellular eukaryotes.     

A wheat biorefining strategy based on solid-state fermentation for fermentative production of succinic acid

In this study, a novel generic feedstock production strategy based on solid-state fermentation (SSF) has been developed and applied to the fermentative production of succinic acid. Wheat was fractionated into bran, gluten and gluten-free flour by milling and gluten extraction processes. The bran, which would normally be a waste product of the wheat milling industry, was used to produce glucoamylase and protease enzymes via SSF using Aspergillus awamori and Aspergillus oryzae, respectively. The resulting solutions were separately utilised for the hydrolysis of gluten-free flour and gluten to generate a glucose-rich stream of over 140gl(-1) glucose and a nitrogen-rich stream of more than 3.5gl(-1) free amino nitrogen. A microbial feedstock consisting of these two streams contained all the essential nutrients required for succinic acid fermentations using Actinobacillus succinogenes. In a fermentation using only the combined hydrolysate streams, around 22gl(-1) succinic acid was produced. The addition of MgCO(3) into the wheat-derived medium improved the succinic acid production further to more than 64gl(-1). These results demonstrate the SSF-based strategy is a successful approach for the production of a generic feedstock from wheat, and that this feedstock can be efficiently utilised for succinic acid production.     

增施钾肥对大棚蟠桃品质及营养生长的影响

该研究以蟠桃品种‘金霞蟠桃’和‘玉霞蟠桃’为试材,分别在2个品种成熟前3周(3W)、2周(2W)和1周(1W)每树环施钾肥(K2O)1 000g,比较不同时期施肥处理蟠桃果实外观品质、内在品质以及营养生长的变化。结果表明:(1)在蟠桃果实成熟前2W和3W尤其是2W施用钾肥,蟠桃果实单果重和体积总体较大,‘金霞蟠桃’2W处理果实单果重、横径和侧径分别显著高于1W处理11.48%、3.51%和3.03%,‘玉霞蟠桃’2W处理则分别显著高于1W处理56.86%、14.97%和3.67%;(2)不同时期增施钾肥对‘玉霞蟠桃’果实颜色的变化影响总体较小,‘金霞蟠桃’2W和3W处理果实的a*值分别显著高于1W处理55.02%和44.49%,但2W和3W处理之间差异不显著;(3)增施钾肥后,2个蟠桃品种果实可溶性固形物含量、蔗糖含量从高到低依次为2W3W1W,可溶性糖总量大小也依次为2W3W1W,但2W和3W处理间差异不显著;不同时期增施钾肥对2个蟠桃品种果实有机酸总量和枝叶营养生长总体影响不大。研究认为,在蟠桃果实成熟前2周左右施用钾肥,成熟时果实体积、单果重增大,果肉可溶性固形物、蔗糖、可溶性总糖含量以及糖酸比高,果实综合品质得到有效改善,但增施钾肥过早或过晚都无法达到最佳效果。     

微流控芯片在中枢神经系统疾病中的应用与展望

近年来,随着微流体技术和生物微电子机械系统技术的不断发展,人类中枢神经系统(CNS)的微流体平台及相关疾病的体外模型逐渐得到了广泛的研究。微流体平台可以更好地模拟体内环境,同时能够控制结构、微环境和外来刺激。文中总结了微流控芯片在CNS的基本技术和CNS疾病中的应用。此外,文中对微流控芯片在CNS中的研究进行了展望,强调了通过跨学科的共同努力能够实现更高程度的仿生学挑战。     

利用CRISPR-Cas系统防控细菌耐药性的研究进展

细菌多重耐药是医药健康、农林牧渔、生态环境等多领域共同面临的全球性挑战.抗生素耐药基因跨物种跨区域传播是导致细菌多重耐药形成的重要原因.然而,目前尚无有效方案解决日益严峻的细菌多重耐药问题.由规律成簇间隔短回文重复序列和与之相关的蛋白组成的CRISPR-Cas系统,可靶向切割进入细菌的外源核酸,具有防控耐药基因转移导致...     

Molecular cloning of amphioxus uncoupling protein and assessment of its uncoupling activity using a yeast heterologous expression system

The present study describes the molecular cloning of a novel cDNA fragment from amphioxus (Branchiostoma belcheri) encoding a 343-amino acid protein that is highly homologous to human uncoupling proteins (UCP), this protein is therefore named amphioxus UCP. This amphioxus UCP shares more homology with and is phylogenetically more related to mammalian UCP2 as compared with UCP1. To further assess the functional similarity of amphioxus UCP to mammalian UCP1 and −2, the amphioxus UCP, rat UCP1, and human UCP2 were separately expressed in Saccharomyces cerevisiae, and the recombinant yeast mitochondria were isolated and assayed for the state 4 respiration rate and proton leak, using pYES2 empty vector as the control. UCP1 increased the state 4 respiration rate by 2.8-fold, and the uncoupling activity was strongly inhibited by GDP, while UCP2 and amphioxus UCP only increased the state 4 respiration rate by 1.5-fold and 1.7-fold in a GDP-insensitive manner, moreover, the proton leak kinetics of amphioxus UCP was very similar to UCP2, but much different from UCP1. In conclusion, the amphioxus UCP has a mild, unregulated uncoupling activity in the yeast system, which resembles mammalian UCP2, but not UCP1.     

Molecular dynamics simulation of the antiamoebin ion channel: linking structure and conductance

Molecular-dynamics simulations were carried out to ascertain which of the potential multimeric forms of the transmembrane peptaibol channel, antiamoebin, is consistent with its measured conductance. Estimates of the conductance obtained through counting ions that cross the channel and by solving the Nernst-Planck equation yield consistent results, indicating that the motion of ions inside the channel can be satisfactorily described as diffusive. The calculated conductance of octameric channels is markedly higher than the conductance measured in single channel recordings, whereas the tetramer appears to be nonconducting. The conductance of the hexamer was estimated to be 115 ± 34 pS and 74 ± 20 pS, at 150 mV and 75 mV, respectively, in satisfactory agreement with the value of 90 pS measured at 75 mV. On this basis, we propose that the antiamoebin channel consists of six monomers. Its pore is large enough to accommodate K⁺ and Cl⁻ with their first solvation shells intact. The free energy barrier encountered by K⁺ is only 2.2 kcal/mol whereas Cl⁻ encounters a substantially higher barrier of nearly 5 kcal/mol. This difference makes the channel selective for cations. Ion crossing events are shown to be uncorrelated and follow Poisson statistics.     

Nootropic effect of neferine on aluminium chloride–induced Alzheimer's disease in experimental models

Alzheimer's disease (AD) is an age‐associated neurodegenerative disease, which is developed by oxidative stress and acetylcholine contraction in the synaptic cleft of the neurons. This leads to dementia, memory loss, and decrease in learning ability and orientation. In this research work, we aimed to explore the neuroprotective effect of neferine on AlCl₃‐induced AD in rats. The results of our study revealed that the increased reactive oxygen species (ROS) and nitric oxide in the hippocampus leads to the development of AD in the rats. The oral treatment of neferine done the following occurrences such as; it potentially inhibited the ROS formation and acts as a scavenging molecule by preventing the neurodegeneration. It also improved the memory and learning ability to complete the maze activity in the AD rats and significantly increased the antioxidants superoxide dismutase, catalase, and reduced glutathione in neferine treated AD rats. It aggressively declined the activity of acetylcholine esterase and Na⁺K⁺ATPase in the neurodegenerative rat models. The gene expression pattern of neuroinflammatory cytokines such as tumor necrosis factor α (TNF‐α), interleukin‐6 (IL‐6), and interleukin‐1β (IL‐1β) were decreased in the neferine‐treated rats. The neuroinflammatory proteins such as inducible nitric oxide (iNOS), cyclooxygenase‐2 (COX‐2), and nuclear factor kappa β (Nf‐κβ) were decreased and Nf‐κβ inhibitor IKBα was increased in the neferine‐treated AD rats. Finally, the histology study proved that the neferine treatment possibly prevents neurodegeneration in the hippocampus tissue of the AD models. Hence, these all findings concluded that the neferine could be a potential neuropreventive as well as neurodegenerative therapeutic compound in neurological and cognitive dysfunction.