Modification of alternative splicing in bovine somatic cell nuclear transfer embryos using engineered CRISPR-Cas13d

Animal cloning can be achieved by somatic cell nuclear transfer(SCNT), but the resulting live birth rate is relatively low. We previously improved the efficiency of bovine SCNT by exogenous melatonin treatment or by overexpression of lysine-specific demethylase 4D(KDM4D) and 4E(KDM4E). In this study, we revealed abundant alternative splicing(AS) transitions during fertilization and embryonic genome activation, and demonstrated abnormal AS in bovine SCNT embryos compared with in vitro fertilized ...     

Reverse spillover of SARS-CoV-2 from human to wild animals

<正>The heavily transmitted and mutated SARS-CoV-2 has constitutes a sustained threat to global health. A recent article published in Nature, firstly provided solid evidence confirming the cross-species transmission of the severe acute respiratory syndrome coronavirus 2(SARS-CoV-2) from human to free-ranging white-tailed deer(Hale et al., 2022).More importantly, circulation of SARS-CoV-2 among deer rapidly resulted into new phylogenetic clades of deer-only viruses which were believed linkin...     

Ungulate bocaparvovirus 4 and rodent bocavirus are different genotypes of the same species of virus

Bocaviruses are associated with many human infectious diseases, such as respiratory tract infections, gastroenteritis, and hepatitis. Rats are known to be reservoirs of bocaviruses, including rodent bocavirus and rat bocavirus. Recently, ungulate bocaparvovirus 4, a known porcine bocavirus, has also been found in rats. Thus, investigating bocaviruses in rats is important for determining the origin of the viruses and preventing and controlling their transmission. To the best of our knowledge, no study to date has investigated bocaviruses in the livers of rats. In this report, a total of 624 rats were trapped in southern China between 2014 and 2017. Liver and serum samples from rats were tested for the prevalence of bocaviruses using PCR. Sequences related to ungulate bocaparvovirus 4 and rodent bocavirus were detected in both liver and serum samples. Interestingly, the prevalence of ungulate bocaparvovirus 4 (reference strain:KJ622366.1) was higher than that of rodent bocavirus (reference strain:KY927868.1) in both liver (2.24% and 0.64%, respectively) and serum samples (2.19% and 0.44%, respectively). The NS1 regions of ungulate bocaparvovirus 4 and rodent bocavirus related sequences displayed over 84% and 88% identity at the nucleic acid and amino acid levels, respectively. Furthermore, these sequences had similar genomic structure, genomic features, and codon usage bias, and shared a common ancestor. These viruses also displayed greater adaptability to rats than pigs. Our results suggested that ungulate bocaparvovirus 4 and rodent bocavirus may originate from rats and may be different genotypes of the same bocavirus species.     

西藏中部退化土壤在不同培肥措施下的肥力特征

于西藏中部春播条件下就不同培肥方式对退化土壤物理、化学和生物性质的影响以及土壤肥力因子间的相互关系进行了研究。结果表明 ,化肥、有机肥 ,特别是有机 -无机肥配合施用在协调土壤环境 ,促进以细菌为主导的土壤微生物繁殖以及土壤有机质、土壤团粒结构形成和土壤养分转化等方面具有重要作用 ;退化土壤物理、化学和生物性质呈现出变化特征的相对一致性 ,并在总体上呈现出较为明显的恢复态势 ,突出地反映了高原高寒以及干旱、半干旱条件下退化土壤所具有的在相对较短的时间内实现肥力恢复及结构重建的可能性及其潜力。石灰性土壤条件下 ,耕层土壤有机质以及不同土层全氮、有效氮、全磷、有效磷的绝对增长量较大。同时 ,不同培肥方式对不同土层土壤真菌、固氮菌以及耕层土壤放线菌的繁殖普遍具有不同程度的抑制作用 ;不同土层土壤固氮菌与纤维素分解菌均呈负相关。     

蔷薇科植物S-RNase特异性区域分析

S-RNase在配子体型自交不亲和性反应中起关键作用,HV区段被认为是雌蕊与花粉间特异识别的关键部位。应用生物信息学方法,对蔷薇科植物的S-RNase序列分析,并对HV区段一级结构邻近区和空间邻近区作物理化学性质分析,发现HV区C端的一段氨基酸序列符合蛋白质相互作用位点的特征;HVP区也是一个多态性区段,可能参与分子识别过程。因此,蔷薇科植物中,S-RNase与花粉S基因产物的作用方式可能为S-RNase的HVC区与花粉S基因产物先非特异性结合,再以HV区和HVP区进行分子间特异识别。     

A dynamic, architectural plant model simulating resource-dependent growth

BACKGROUND AND AIMS: Physiological and architectural plant models have originally been developed for different purposes and therefore have little in common, thus making combined applications difficult. There is, however, an increasing demand for crop models that simulate the genetic and resource-dependent variability of plant geometry and architecture, because man is increasingly able to transform plant production systems through combined genetic and environmental engineering. MODEL: GREENLAB is presented, a mathematical plant model that simulates interactions between plant structure and function. Dual-scale automaton is used to simulate plant organogenesis from germination to maturity on the basis of organogenetic growth cycles that have constant thermal time. Plant fresh biomass production is computed from transpiration, assuming transpiration efficiency to be constant and atmospheric demand to be the driving force, under non-limiting water supply. The fresh biomass is then distributed among expanding organs according to their relative demand. Demand for organ growth is estimated from allometric relationships (e.g. leaf surface to weight ratios) and kinetics of potential growth rate for each organ type. These are obtained through parameter optimization against empirical, morphological data sets by running the model in inverted mode. Potential growth rates are then used as estimates of relative sink strength in the model. These and other 'hidden' plant parameters are calibrated using the non-linear, least-square method. KEY RESULTS AND CONCLUSIONS: The model reproduced accurately the dynamics of plant growth, architecture and geometry of various annual and woody plants, enabling 3D visualization. It was also able to simulate the variability of leaf size on the plant and compensatory growth following pruning, as a result of internal competition for resources. The potential of the model's underlying concepts to predict the plant's phenotypic plasticity is discussed.     

玉米及马齿苋叶片SOD活性诱导研究

以玉米幼苗及马齿苋作材料,通过甘露醇、H2O2、臭氧和强光等胁迫后,用NBT光化还原抑制法测定叶中SOD活性的变化。臭氧和强光能诱导玉米叶片SOD活性增加。0.5mol／L甘露醇处理玉米叶片12h,SOD活性上升,至48h后下降;在该甘露醇溶液中另外加入10^-2mol/L H2O2;处理12h后SOD活性基本不变。对玉米叶片单独用10^-2mol/L H2O2诱导,30min内SOD活性上升到最高值,随着处理时间的延长又逐渐下降。用耐强光、耐干旱的野生马齿苋作为材料,与玉米相比,其叶片SOD基础活性低于后者;若予以正午强光结合渗透胁迫2h,其叶中SOD活性增幅超过玉米,从种间比较的角度旁证了SOD在抗逆性中的作用。推测植物中存在比活性氧更为直接的物理诱导机制。     

鸡减蛋综合征病毒(EDSV)基因组右末端结构的分析

从中国发病鸡中分离的鸡减蛋综合征病毒（ＥｇｇＤｒｏｐＳｙｎｄｒｏｍＶｉｒｕｓ,ＥＤＳＶ）弱毒株（ＡＡ－２）,其基因组全长约为３３ｋｂ。用限制性内切酶ＨｉｎｄⅢ水解ＥＤＳＶ全基因组,构建了以ｐＢｌｕｅｓｃｒｉｐｔⅡ（ＫＳ＋）为载体的右末端片段的克隆（约４．２ｋｂ）,对其进行了序列测定和结构分析。该片段全长４１８３个碱基对（ｂｐ）,位于基因组右末端８７．３ｍ．ｕ．－１００ｍ．ｕ．。结果显示,该片段与哺乳动物腺病毒右末端Ｅ４区结构不同,与禽Ⅰ型腺病毒代表株ＣＥＬＯ右末端片段亦无同源性。本文为深入了解ＥＤＳＶ基因组结构特点,ＥＤＳＶ与其他腺病毒基因结构与功能的进化关系和ＥＤＳＶ载体的构建奠定了分子生物学基础